Wall clock time and date at job start Fri Apr 10 2020 18:28:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.35648 * 119.95655 * 2 1 4 4 O 1.34682 * 119.11544 * 359.97438 * 3 2 1 5 5 N 1.31850 * 121.77744 * 179.97438 * 3 2 1 6 6 C 1.32573 * 121.60882 * 0.02562 * 5 3 2 7 7 C 1.39424 * 119.70028 * 0.02562 * 6 5 3 8 8 C 1.46894 * 120.81751 * 179.97438 * 7 6 5 9 9 O 1.21674 * 120.00503 * 354.22914 * 8 7 6 10 10 N 1.34781 * 119.99896 * 174.23355 * 8 7 6 11 11 C 1.46504 * 119.99954 * 185.09971 * 10 8 7 12 12 C 1.52997 * 109.46806 * 179.97438 * 11 10 8 13 13 C 1.53782 * 113.61614 * 274.13358 * 12 11 10 14 14 C 1.53957 * 87.02058 * 220.05081 * 13 12 11 15 15 N 1.46503 * 113.53736 * 270.81650 * 14 13 12 16 16 C 1.36934 * 119.99566 * 252.49222 * 15 14 13 17 17 H 1.07999 * 120.00310 * 0.02562 * 16 15 14 18 18 C 1.38816 * 120.00034 * 179.97438 * 16 15 14 19 19 N 1.31614 * 120.00420 * 180.02562 * 18 16 15 20 20 Si 1.86796 * 119.99688 * 0.02562 * 18 16 15 21 21 H 1.48503 * 109.47162 * 89.99782 * 20 18 16 22 22 H 1.48505 * 109.47275 * 209.99652 * 20 18 16 23 23 H 1.48502 * 109.47402 * 329.99617 * 20 18 16 24 24 C 1.53779 * 87.11109 * 25.36438 * 14 13 12 25 25 C 1.35021 * 119.95076 * 180.02562 * 2 1 3 26 26 O 1.21828 * 120.77144 * 359.97438 * 25 2 1 27 27 H 1.09005 * 109.46844 * 0.02562 * 1 2 3 28 28 H 1.08998 * 109.47302 * 120.00183 * 1 2 3 29 29 H 1.08998 * 109.47483 * 240.00542 * 1 2 3 30 30 H 0.96697 * 117.00500 * 179.97438 * 4 3 2 31 31 H 1.08000 * 120.14470 * 179.72901 * 6 5 3 32 32 H 0.96999 * 119.99985 * 5.09238 * 10 8 7 33 33 H 1.09002 * 109.47287 * 299.99867 * 11 10 8 34 34 H 1.09006 * 109.46751 * 59.99565 * 11 10 8 35 35 H 1.08999 * 112.84997 * 45.34133 * 12 11 10 36 36 H 1.08990 * 113.61614 * 334.57382 * 13 12 11 37 37 H 1.09004 * 113.60681 * 105.47200 * 13 12 11 38 38 H 1.08991 * 113.74124 * 139.94898 * 14 13 12 39 39 H 0.96990 * 119.99992 * 72.49570 * 15 14 13 40 40 H 0.96993 * 120.00422 * 180.02562 * 19 18 16 41 41 H 1.08996 * 113.61355 * 220.08915 * 24 14 13 42 42 H 1.09000 * 113.61334 * 89.18584 * 24 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1424 1.1753 0.0000 4 8 1.4502 2.3306 -0.0005 5 7 3.4602 1.2172 0.0005 6 6 4.1906 0.1108 0.0005 7 6 3.5604 -1.1330 -0.0005 8 6 4.3456 -2.3744 -0.0011 9 8 5.5569 -2.3282 -0.1066 10 7 3.7243 -3.5648 0.1152 11 6 4.5125 -4.7947 0.2271 12 6 3.5709 -5.9946 0.3467 13 6 3.1203 -6.2828 1.7885 14 6 3.2822 -7.7771 1.4552 15 7 2.0709 -8.3876 0.9018 16 6 1.3333 -9.2557 1.6617 17 1 1.6443 -9.4900 2.6690 18 6 0.1853 -9.8339 1.1376 19 7 -0.5240 -10.6679 1.8681 20 14 -0.3530 -9.4282 -0.6045 21 1 0.2650 -10.3917 -1.5506 22 1 -1.8321 -9.5204 -0.6998 23 1 0.0802 -8.0500 -0.9483 24 6 4.2999 -7.3482 0.3851 25 6 2.1391 -1.1699 -0.0005 26 8 1.5433 -2.2326 -0.0005 27 1 -0.3633 1.0277 -0.0005 28 1 -0.3634 -0.5138 -0.8899 29 1 -0.3634 -0.5137 0.8900 30 1 1.9635 3.1500 -0.0001 31 1 5.2688 0.1726 -0.0035 32 1 2.7553 -3.6072 0.1249 33 1 5.1360 -4.9086 -0.6597 34 1 5.1462 -4.7407 1.1123 35 1 2.7496 -5.9613 -0.3691 36 1 3.8198 -5.9257 2.5442 37 1 2.0904 -5.9887 1.9910 38 1 3.7195 -8.3622 2.2640 39 1 1.7915 -8.1770 -0.0028 40 1 -1.3259 -11.0722 1.5017 41 1 4.2210 -7.9131 -0.5438 42 1 5.3226 -7.2830 0.7564 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001091177812.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:28:30 Heat of formation + Delta-G solvation = -53.482673 kcal Electronic energy + Delta-G solvation = -26798.957177 eV Core-core repulsion = 22780.295968 eV Total energy + Delta-G solvation = -4018.661209 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 322.147 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -43.19421 -40.88443 -40.09266 -39.63463 -38.07253 -36.43193 -35.98665 -34.86122 -32.71756 -31.95538 -29.11666 -28.89974 -26.48231 -26.17016 -25.31615 -24.80000 -23.15762 -22.08804 -20.60974 -20.20965 -19.99286 -19.55660 -18.83812 -18.10693 -17.34177 -17.08425 -16.92449 -16.59053 -16.39506 -16.03742 -15.74455 -15.56006 -15.51369 -15.05994 -14.74420 -14.63045 -14.50396 -14.33143 -14.05911 -13.55893 -13.39589 -13.18068 -13.08839 -13.01717 -12.70145 -12.22330 -11.96295 -11.89291 -11.65615 -11.60280 -11.46538 -11.44227 -11.08090 -10.96515 -10.79055 -10.07346 -9.63260 -9.31496 -8.04773 -5.37878 -0.79241 0.50964 0.58517 1.35567 1.38238 1.45229 1.61364 2.15630 2.32535 2.45734 2.54221 3.00278 3.19571 3.25194 3.50164 3.71909 3.75319 3.87977 3.99132 4.10319 4.17248 4.25511 4.27108 4.37534 4.50356 4.68297 4.69589 4.76206 4.83904 4.90496 4.94375 5.07121 5.10311 5.24931 5.32449 5.51996 5.57263 5.78893 5.93792 6.21066 6.33743 6.51153 6.68803 7.05477 7.26649 7.82840 8.01195 9.16820 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.016017 B = 0.002894 C = 0.002553 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1747.763806 B = 9673.696581 C =10966.360882 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.052 3.948 2 N -0.511 5.511 3 C 0.625 3.375 4 O -0.432 6.432 5 N -0.587 5.587 6 C 0.295 3.705 7 C -0.388 4.388 8 C 0.579 3.421 9 O -0.585 6.585 10 N -0.721 5.721 11 C 0.137 3.863 12 C -0.110 4.110 13 C -0.156 4.156 14 C 0.148 3.852 15 N -0.735 5.735 16 C -0.232 4.232 17 H 0.059 0.941 18 C -0.063 4.063 19 N -0.983 5.983 20 Si 0.953 3.047 21 H -0.275 1.275 22 H -0.294 1.294 23 H -0.258 1.258 24 C -0.128 4.128 25 C 0.549 3.451 26 O -0.547 6.547 27 H 0.133 0.867 28 H 0.087 0.913 29 H 0.086 0.914 30 H 0.468 0.532 31 H 0.202 0.798 32 H 0.411 0.589 33 H 0.068 0.932 34 H 0.071 0.929 35 H 0.076 0.924 36 H 0.093 0.907 37 H 0.043 0.957 38 H 0.064 0.936 39 H 0.365 0.635 40 H 0.258 0.742 41 H 0.069 0.931 42 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.716 34.384 -6.367 35.608 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.089 4.089 2 N -0.236 5.236 3 C 0.327 3.673 4 O -0.232 6.232 5 N -0.328 5.328 6 C 0.146 3.854 7 C -0.400 4.400 8 C 0.368 3.632 9 O -0.468 6.468 10 N -0.379 5.379 11 C 0.013 3.987 12 C -0.129 4.129 13 C -0.197 4.197 14 C 0.039 3.961 15 N -0.377 5.377 16 C -0.363 4.363 17 H 0.077 0.923 18 C -0.255 4.255 19 N -0.633 5.633 20 Si 0.781 3.219 21 H -0.201 1.201 22 H -0.220 1.220 23 H -0.183 1.183 24 C -0.167 4.167 25 C 0.350 3.650 26 O -0.426 6.426 27 H 0.152 0.848 28 H 0.106 0.894 29 H 0.104 0.896 30 H 0.336 0.664 31 H 0.218 0.782 32 H 0.255 0.745 33 H 0.086 0.914 34 H 0.089 0.911 35 H 0.094 0.906 36 H 0.112 0.888 37 H 0.062 0.938 38 H 0.082 0.918 39 H 0.198 0.802 40 H 0.067 0.933 41 H 0.087 0.913 42 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges 6.850 34.044 -6.238 35.282 hybrid contribution -1.345 -0.630 -0.710 1.646 sum 5.505 33.413 -6.948 34.569 Atomic orbital electron populations 1.22508 0.73828 1.07256 1.05263 1.46297 1.12260 1.04830 1.60246 1.20467 0.84785 0.82222 0.79810 1.84184 1.39036 1.14603 1.85377 1.68676 1.00870 1.30563 1.32678 1.23274 1.01495 0.84107 0.76506 1.21390 0.92075 0.96804 1.29698 1.17495 0.86540 0.83425 0.75733 1.90743 1.14436 1.87921 1.53732 1.46592 1.12579 1.05934 1.72822 1.21349 0.93364 0.82055 1.01900 1.22562 0.98238 0.94171 0.97883 1.23749 1.00529 0.99162 0.96218 1.21376 0.86732 0.91995 0.96006 1.42486 1.27727 1.52808 1.14634 1.19093 1.03753 1.16473 0.96939 0.92269 1.25476 0.97999 0.99627 1.02385 1.69870 1.19074 1.35680 1.38705 0.85434 0.77047 0.78833 0.80624 1.20136 1.22044 1.18294 1.23346 0.99368 0.94285 0.99687 1.17075 0.87867 0.82515 0.77502 1.90707 1.70449 1.28029 1.53403 0.84837 0.89437 0.89561 0.66412 0.78161 0.74453 0.91402 0.91062 0.90599 0.88841 0.93847 0.91771 0.80172 0.93275 0.91265 0.86908 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.05 0.47 10.10 127.77 1.29 1.76 16 2 N -0.51 -7.20 2.99 -789.43 -2.36 -9.56 16 3 C 0.62 5.39 8.60 179.67 1.54 6.93 16 4 O -0.43 0.29 11.91 -79.47 -0.95 -0.66 16 5 N -0.59 -6.38 10.31 -311.75 -3.21 -9.59 16 6 C 0.30 4.72 10.83 84.87 0.92 5.63 16 7 C -0.39 -8.98 5.93 -19.75 -0.12 -9.10 16 8 C 0.58 17.20 7.73 86.51 0.67 17.87 16 9 O -0.58 -19.41 16.42 -4.27 -0.07 -19.48 16 10 N -0.72 -22.02 5.48 -466.85 -2.56 -24.57 16 11 C 0.14 3.94 5.50 86.38 0.48 4.41 16 12 C -0.11 -3.42 3.62 -10.27 -0.04 -3.46 16 13 C -0.16 -5.44 7.44 31.18 0.23 -5.21 16 14 C 0.15 5.82 4.57 45.58 0.21 6.03 16 15 N -0.74 -35.75 5.11 -320.17 -1.64 -37.39 16 16 C -0.23 -13.64 10.45 84.03 0.88 -12.76 16 17 H 0.06 3.79 8.06 -2.91 -0.02 3.77 16 18 C -0.06 -3.85 5.50 84.86 0.47 -3.38 16 19 N -0.98 -64.39 13.97 21.65 0.30 -64.08 16 20 Si 0.95 47.13 27.74 68.60 1.90 49.03 16 21 H -0.28 -13.18 7.11 99.48 0.71 -12.47 16 22 H -0.29 -14.59 7.11 99.48 0.71 -13.88 16 23 H -0.26 -11.81 6.52 99.48 0.65 -11.16 16 24 C -0.13 -3.88 7.39 31.12 0.23 -3.65 16 25 C 0.55 12.58 7.47 85.18 0.64 13.22 16 26 O -0.55 -16.16 13.90 -4.76 -0.07 -16.23 16 27 H 0.13 0.32 6.77 -2.38 -0.02 0.30 16 28 H 0.09 0.89 8.14 -2.39 -0.02 0.87 16 29 H 0.09 0.92 8.14 -2.39 -0.02 0.90 16 30 H 0.47 -4.87 9.08 -74.06 -0.67 -5.55 16 31 H 0.20 2.67 7.70 -2.91 -0.02 2.65 16 32 H 0.41 13.30 5.14 -92.71 -0.48 12.83 16 33 H 0.07 1.91 8.14 -2.39 -0.02 1.89 16 34 H 0.07 1.99 7.87 -2.38 -0.02 1.97 16 35 H 0.08 2.60 8.14 -2.39 -0.02 2.58 16 36 H 0.09 2.84 7.92 -2.39 -0.02 2.82 16 37 H 0.04 1.72 8.14 -2.38 -0.02 1.70 16 38 H 0.06 2.58 8.10 -2.39 -0.02 2.56 16 39 H 0.36 17.20 5.76 -92.72 -0.53 16.66 16 40 H 0.26 16.08 8.31 -92.71 -0.77 15.31 16 41 H 0.07 2.12 8.14 -2.39 -0.02 2.10 16 42 H 0.11 2.78 8.10 -2.39 -0.02 2.76 16 Total: -1.00 -83.72 355.36 -1.90 -85.62 By element: Atomic # 1 Polarization: 29.26 SS G_CDS: -0.65 Total: 28.62 kcal Atomic # 6 Polarization: 10.90 SS G_CDS: 7.40 Total: 18.29 kcal Atomic # 7 Polarization: -135.73 SS G_CDS: -9.47 Total: -145.20 kcal Atomic # 8 Polarization: -35.28 SS G_CDS: -1.08 Total: -36.36 kcal Atomic # 14 Polarization: 47.13 SS G_CDS: 1.90 Total: 49.03 kcal Total: -83.72 -1.90 -85.62 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001091177812.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.138 kcal (2) G-P(sol) polarization free energy of solvation -83.723 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.584 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.898 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.621 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.483 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds