Wall clock time and date at job start Fri Apr 10 2020 18:26:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 N 1.46499 * 109.47271 * 2 1 4 4 C 1.34989 * 125.97199 * 125.00494 * 3 2 1 5 5 C 1.35210 * 107.87421 * 179.97438 * 4 3 2 6 6 C 1.40456 * 107.87136 * 359.97438 * 5 4 3 7 7 N 1.39929 * 125.98053 * 180.02562 * 6 5 4 8 8 C 1.34775 * 120.00321 * 0.02562 * 7 6 5 9 9 O 1.21384 * 119.99703 * 0.02562 * 8 7 6 10 10 C 1.49343 * 120.00187 * 179.97438 * 8 7 6 11 11 O 1.21362 * 119.99883 * 0.02562 * 10 8 7 12 12 N 1.34775 * 120.00187 * 179.97438 * 10 8 7 13 13 C 1.47426 * 125.64489 * 0.04552 * 12 10 8 14 14 C 1.54914 * 104.82992 * 204.09098 * 13 12 10 15 15 C 1.55405 * 101.66697 * 323.07703 * 14 13 12 16 16 O 1.42895 * 110.69130 * 277.05126 * 15 14 13 17 17 C 1.50696 * 110.85075 * 153.69831 * 15 14 13 18 18 H 1.07999 * 120.00069 * 5.09169 * 17 15 14 19 19 C 1.37874 * 119.99892 * 185.08365 * 17 15 14 20 20 N 1.31514 * 120.00018 * 0.02562 * 19 17 15 21 21 Si 1.86800 * 120.00287 * 180.02562 * 19 17 15 22 22 H 1.48499 * 109.47022 * 90.00155 * 21 19 17 23 23 H 1.48491 * 109.47398 * 210.00221 * 21 19 17 24 24 H 1.48500 * 109.46822 * 330.00457 * 21 19 17 25 25 C 1.47018 * 125.64993 * 180.02562 * 12 10 8 26 26 N 1.31277 * 108.03581 * 0.26919 * 6 5 4 27 27 H 1.08999 * 109.47160 * 59.99548 * 1 2 3 28 28 H 1.08997 * 109.46939 * 180.02562 * 1 2 3 29 29 H 1.09002 * 109.46779 * 299.99598 * 1 2 3 30 30 H 1.09002 * 109.46779 * 240.00402 * 2 1 3 31 31 H 1.08999 * 109.47160 * 120.00452 * 2 1 3 32 32 H 1.07996 * 126.05939 * 359.97145 * 4 3 2 33 33 H 1.08009 * 126.06312 * 180.02562 * 5 4 3 34 34 H 0.97004 * 119.99704 * 180.02562 * 7 6 5 35 35 H 1.08999 * 110.36956 * 322.93474 * 13 12 10 36 36 H 1.09001 * 110.36709 * 85.14667 * 13 12 10 37 37 H 1.09000 * 111.00339 * 81.07133 * 14 13 12 38 38 H 1.09001 * 111.00161 * 204.91727 * 14 13 12 39 39 H 0.96706 * 113.99347 * 174.82523 * 16 15 14 40 40 H 0.97004 * 120.00211 * 180.02562 * 20 19 17 41 41 H 1.09002 * 109.88241 * 298.39592 * 25 12 10 42 42 H 1.09000 * 109.88049 * 59.40721 * 25 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.8736 1.9198 0.8948 5 6 3.0753 3.2117 0.5505 6 6 2.3145 3.4748 -0.6005 7 7 2.2449 4.6970 -1.2783 8 6 2.9508 5.7554 -0.8336 9 8 3.6474 5.6484 0.1547 10 6 2.8769 7.0597 -1.5573 11 8 2.1809 7.1666 -2.5458 12 7 3.5824 8.1183 -1.1123 13 6 4.4634 8.1280 0.0697 14 6 4.5230 9.6128 0.5076 15 6 4.5204 10.3450 -0.8631 16 8 5.8387 10.3929 -1.4125 17 6 3.9461 11.7318 -0.7294 18 1 3.6825 12.1154 0.2452 19 6 3.7572 12.5109 -1.8511 20 7 4.0779 12.0436 -3.0379 21 14 3.0459 14.2302 -1.6853 22 1 4.1492 15.2063 -1.4974 23 1 2.2864 14.5723 -2.9145 24 1 2.1369 14.2787 -0.5121 25 6 3.6012 9.4544 -1.7254 26 7 1.6762 2.3748 -0.9261 27 1 -0.3633 0.5139 -0.8899 28 1 -0.3633 -1.0276 0.0005 29 1 -0.3633 0.5138 0.8901 30 1 1.8933 -0.5138 -0.8901 31 1 1.8934 -0.5139 0.8899 32 1 3.3178 1.4094 1.7365 33 1 3.7096 3.9161 1.0682 34 1 1.6886 4.7824 -2.0684 35 1 4.0387 7.5148 0.8645 36 1 5.4578 7.7688 -0.1953 37 1 3.6449 9.8827 1.0942 38 1 5.4392 9.8206 1.0605 39 1 5.8804 10.7688 -2.3025 40 1 3.9454 12.5918 -3.8271 41 1 3.9929 9.3910 -2.7406 42 1 2.5931 9.8687 -1.7423 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001118426575.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:26:20 Heat of formation + Delta-G solvation = -41.415140 kcal Electronic energy + Delta-G solvation = -27049.954054 eV Core-core repulsion = 23031.816132 eV Total energy + Delta-G solvation = -4018.137921 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 322.147 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -42.58622 -41.68575 -40.06889 -38.98392 -36.78291 -35.94518 -34.52847 -34.23695 -31.91160 -31.24505 -30.04567 -29.68330 -27.82533 -26.05412 -24.44457 -23.64047 -22.59796 -21.57965 -21.36334 -20.73274 -19.12455 -18.84612 -18.37180 -17.88267 -17.49603 -17.10580 -16.97145 -16.41299 -16.25485 -15.95821 -15.67087 -15.16591 -14.81973 -14.78384 -14.67934 -14.45948 -14.04565 -14.00245 -13.53312 -13.43018 -13.40667 -12.95407 -12.85663 -12.67807 -12.53350 -12.36660 -12.32919 -12.25557 -12.07256 -11.89894 -11.66429 -11.18747 -10.77421 -10.56437 -10.30957 -9.95770 -9.79328 -9.32254 -8.26471 -6.41842 -0.00641 0.75804 0.94001 1.43087 1.45525 1.54630 1.66373 1.67697 2.17372 2.36292 2.44153 3.00071 3.09800 3.64018 3.79021 3.98102 4.04241 4.13385 4.14068 4.30781 4.35173 4.41385 4.49255 4.61268 4.71859 4.79417 4.83505 4.90342 4.94344 4.99611 5.10565 5.13382 5.26751 5.32432 5.45389 5.58575 5.73228 5.78702 6.04217 6.15186 6.25891 6.43929 6.65784 6.71010 6.75098 7.27570 7.35462 8.79850 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.032618 B = 0.002511 C = 0.002430 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 858.202550 B =11148.723012 C =11521.134404 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.124 3.876 3 N -0.361 5.361 4 C 0.087 3.913 5 C -0.298 4.298 6 C 0.273 3.727 7 N -0.606 5.606 8 C 0.533 3.467 9 O -0.491 6.491 10 C 0.512 3.488 11 O -0.556 6.556 12 N -0.578 5.578 13 C 0.105 3.895 14 C -0.114 4.114 15 C 0.234 3.766 16 O -0.586 6.586 17 C -0.555 4.555 18 H 0.069 0.931 19 C 0.027 3.973 20 N -0.914 5.914 21 Si 0.963 3.037 22 H -0.274 1.274 23 H -0.285 1.285 24 H -0.268 1.268 25 C 0.117 3.883 26 N -0.343 5.343 27 H 0.045 0.955 28 H 0.101 0.899 29 H 0.053 0.947 30 H 0.092 0.908 31 H 0.139 0.861 32 H 0.227 0.773 33 H 0.164 0.836 34 H 0.428 0.572 35 H 0.108 0.892 36 H 0.073 0.927 37 H 0.086 0.914 38 H 0.093 0.907 39 H 0.376 0.624 40 H 0.271 0.729 41 H 0.046 0.954 42 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.371 -23.231 9.005 25.142 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.005 3.995 3 N -0.146 5.146 4 C -0.060 4.060 5 C -0.328 4.328 6 C 0.019 3.981 7 N -0.255 5.255 8 C 0.313 3.687 9 O -0.363 6.363 10 C 0.294 3.706 11 O -0.436 6.436 12 N -0.310 5.310 13 C -0.016 4.016 14 C -0.152 4.152 15 C 0.193 3.807 16 O -0.394 6.394 17 C -0.593 4.593 18 H 0.087 0.913 19 C -0.174 4.174 20 N -0.553 5.553 21 Si 0.789 3.211 22 H -0.199 1.199 23 H -0.211 1.211 24 H -0.192 1.192 25 C -0.005 4.005 26 N -0.174 5.174 27 H 0.064 0.936 28 H 0.119 0.881 29 H 0.072 0.928 30 H 0.110 0.890 31 H 0.157 0.843 32 H 0.243 0.757 33 H 0.181 0.819 34 H 0.267 0.733 35 H 0.126 0.874 36 H 0.092 0.908 37 H 0.105 0.895 38 H 0.111 0.889 39 H 0.225 0.775 40 H 0.080 0.920 41 H 0.064 0.936 42 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges -3.948 -24.166 8.748 26.002 hybrid contribution -0.353 1.987 -1.127 2.311 sum -4.301 -22.179 7.621 23.843 Atomic orbital electron populations 1.22041 0.94003 1.04010 1.02042 1.22163 0.96024 0.75077 1.06211 1.48748 1.35554 1.10169 1.20138 1.23247 0.93268 0.93375 0.96158 1.21959 1.11088 0.98725 1.01049 1.19297 0.98184 0.86102 0.94477 1.42098 1.46224 1.06605 1.30593 1.19764 0.80168 0.84232 0.84516 1.90634 1.38022 1.82984 1.24644 1.19651 0.81366 0.84617 0.84950 1.90740 1.41468 1.84226 1.27152 1.48689 1.42636 1.10448 1.29247 1.22734 0.93907 0.98130 0.86823 1.22867 1.03334 0.92546 0.96433 1.19765 0.79738 0.91945 0.89205 1.86125 1.30606 1.85978 1.36672 1.21786 1.43353 0.99953 0.94227 0.91315 1.25793 0.94546 1.02194 0.94871 1.69790 1.48187 1.38698 0.98663 0.85469 0.78473 0.79568 0.77634 1.19940 1.21108 1.19210 1.22820 1.00967 0.79498 0.97232 1.77266 1.26445 0.96632 1.17077 0.93624 0.88059 0.92812 0.89004 0.84328 0.75705 0.81911 0.73349 0.87359 0.90826 0.89545 0.88887 0.77453 0.91994 0.93572 0.93264 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.57 10.09 71.98 0.73 -0.84 16 2 C 0.12 1.05 7.23 86.38 0.62 1.68 16 3 N -0.36 -6.50 3.68 -348.11 -1.28 -7.78 16 4 C 0.09 1.41 11.43 83.51 0.95 2.36 16 5 C -0.30 -7.37 9.60 22.11 0.21 -7.16 16 6 C 0.27 7.81 8.10 133.40 1.08 8.89 16 7 N -0.61 -18.28 5.43 -308.90 -1.68 -19.95 16 8 C 0.53 17.89 7.82 87.24 0.68 18.57 16 9 O -0.49 -16.30 10.90 -3.35 -0.04 -16.34 16 10 C 0.51 20.36 7.91 87.24 0.69 21.05 16 11 O -0.56 -24.62 16.80 -3.28 -0.06 -24.68 16 12 N -0.58 -24.09 3.33 -813.49 -2.71 -26.79 16 13 C 0.11 3.82 6.06 86.86 0.53 4.34 16 14 C -0.11 -4.45 6.24 32.08 0.20 -4.25 16 15 C 0.23 11.21 0.86 -10.26 -0.01 11.20 16 16 O -0.59 -29.29 13.08 -148.98 -1.95 -31.23 16 17 C -0.56 -28.63 8.13 25.60 0.21 -28.42 16 18 H 0.07 3.45 7.78 -2.91 -0.02 3.43 16 19 C 0.03 1.40 5.28 84.65 0.45 1.85 16 20 N -0.91 -48.73 10.98 21.45 0.24 -48.49 16 21 Si 0.96 41.51 29.54 68.60 2.03 43.54 16 22 H -0.27 -11.57 7.11 99.48 0.71 -10.86 16 23 H -0.29 -12.25 7.11 99.48 0.71 -11.54 16 24 H -0.27 -11.25 7.11 99.48 0.71 -10.55 16 25 C 0.12 5.68 5.23 86.73 0.45 6.13 16 26 N -0.34 -9.06 12.43 -54.54 -0.68 -9.73 16 27 H 0.04 0.69 8.14 -2.39 -0.02 0.67 16 28 H 0.10 0.42 8.14 -2.39 -0.02 0.40 16 29 H 0.05 0.60 8.14 -2.39 -0.02 0.58 16 30 H 0.09 0.69 8.14 -2.39 -0.02 0.67 16 31 H 0.14 0.08 8.07 -2.39 -0.02 0.06 16 32 H 0.23 1.25 8.06 -2.91 -0.02 1.22 16 33 H 0.16 4.33 5.91 -2.91 -0.02 4.32 16 34 H 0.43 12.27 8.29 -92.71 -0.77 11.50 16 35 H 0.11 3.52 6.16 -2.39 -0.01 3.50 16 36 H 0.07 2.64 8.14 -2.39 -0.02 2.62 16 37 H 0.09 3.20 8.04 -2.39 -0.02 3.18 16 38 H 0.09 3.36 8.14 -2.39 -0.02 3.34 16 39 H 0.38 19.44 7.47 -74.05 -0.55 18.89 16 40 H 0.27 13.84 8.31 -92.71 -0.77 13.07 16 41 H 0.05 2.45 7.92 -2.39 -0.02 2.43 16 42 H 0.05 2.60 7.81 -2.39 -0.02 2.58 16 Total: -1.00 -66.98 354.15 0.43 -66.55 By element: Atomic # 1 Polarization: 39.76 SS G_CDS: -0.24 Total: 39.51 kcal Atomic # 6 Polarization: 28.60 SS G_CDS: 6.80 Total: 35.40 kcal Atomic # 7 Polarization: -106.64 SS G_CDS: -6.11 Total: -112.75 kcal Atomic # 8 Polarization: -70.21 SS G_CDS: -2.04 Total: -72.25 kcal Atomic # 14 Polarization: 41.51 SS G_CDS: 2.03 Total: 43.54 kcal Total: -66.98 0.43 -66.55 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001118426575.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.134 kcal (2) G-P(sol) polarization free energy of solvation -66.981 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.848 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.432 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.549 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.415 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds