Wall clock time and date at job start Fri Apr 10 2020 18:26:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.46498 * 120.00475 * 2 1 4 4 C 1.50701 * 109.46970 * 90.00341 * 3 2 1 5 5 C 1.34668 * 126.58879 * 264.68945 * 4 3 2 6 6 N 1.34131 * 108.01820 * 179.87672 * 5 4 3 7 7 C 1.30498 * 109.25467 * 0.39593 * 6 5 4 8 8 N 1.35041 * 108.70133 * 359.75337 * 7 6 5 9 9 H 0.96997 * 126.39664 * 179.97438 * 8 7 6 10 10 C 1.34780 * 119.99465 * 180.02562 * 2 1 3 11 11 O 1.21354 * 119.99511 * 185.34319 * 10 2 1 12 12 C 1.49449 * 120.00436 * 5.34349 * 10 2 1 13 13 O 1.21351 * 119.99520 * 5.98369 * 12 10 2 14 14 N 1.34776 * 120.00032 * 185.98379 * 12 10 2 15 15 C 1.47017 * 125.65071 * 359.69042 * 14 12 10 16 16 C 1.54333 * 107.26665 * 178.85296 * 15 14 12 17 17 C 1.55154 * 103.01826 * 338.13842 * 16 15 14 18 18 O 1.42907 * 111.00539 * 277.23562 * 17 16 15 19 19 C 1.50704 * 111.03820 * 153.39990 * 17 16 15 20 20 H 1.07997 * 119.99419 * 6.32991 * 19 17 16 21 21 C 1.37870 * 120.00084 * 186.33074 * 19 17 16 22 22 N 1.31521 * 120.00143 * 359.97438 * 21 19 17 23 23 Si 1.86801 * 120.00007 * 179.97438 * 21 19 17 24 24 H 1.48504 * 109.47074 * 359.97438 * 23 21 19 25 25 H 1.48492 * 109.47378 * 120.00106 * 23 21 19 26 26 H 1.48501 * 109.47270 * 240.00098 * 23 21 19 27 27 C 1.47422 * 125.64387 * 179.97438 * 14 12 10 28 28 H 1.08996 * 109.47677 * 95.24953 * 1 2 3 29 29 H 1.09001 * 109.47328 * 215.26259 * 1 2 3 30 30 H 1.09006 * 109.46990 * 335.25332 * 1 2 3 31 31 H 1.09004 * 109.46907 * 330.00326 * 3 2 1 32 32 H 1.08994 * 109.47283 * 210.00655 * 3 2 1 33 33 H 1.07997 * 125.99256 * 0.02562 * 5 4 3 34 34 H 1.08002 * 125.64738 * 179.73755 * 7 6 5 35 35 H 1.09003 * 109.87816 * 298.39453 * 15 14 12 36 36 H 1.09001 * 109.88117 * 59.55909 * 15 14 12 37 37 H 1.09007 * 110.84852 * 219.67515 * 16 15 14 38 38 H 1.08995 * 110.51822 * 96.45400 * 16 15 14 39 39 H 0.96698 * 113.99851 * 173.65243 * 18 17 16 40 40 H 0.97003 * 119.99508 * 180.02562 * 22 21 19 41 41 H 1.08999 * 110.37219 * 322.93157 * 27 14 12 42 42 H 1.09000 * 110.36710 * 85.14412 * 27 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1976 1.2687 0.0000 4 6 2.4488 1.7036 1.4208 5 6 1.6975 2.5554 2.1444 6 7 2.2577 2.6753 3.3572 7 6 3.3322 1.9366 3.4098 8 7 3.4878 1.3134 2.2220 9 1 4.2026 0.7034 1.9813 10 6 2.1388 -1.1673 -0.0005 11 8 3.3483 -1.1696 0.0973 12 6 1.3964 -2.4587 -0.1216 13 8 0.2006 -2.4539 -0.3283 14 7 2.0549 -3.6284 -0.0013 15 6 3.4970 -3.7788 0.2422 16 6 3.7908 -5.2911 0.3340 17 6 2.4072 -5.8948 0.6925 18 8 2.1590 -5.8084 2.0972 19 6 2.2984 -7.3199 0.2144 20 1 3.1596 -7.8140 -0.2104 21 6 1.0995 -7.9926 0.3193 22 7 0.0509 -7.3908 0.8370 23 14 0.9645 -9.7587 -0.2741 24 1 2.2760 -10.2019 -0.8116 25 1 0.5727 -10.6334 0.8601 26 1 -0.0626 -9.8446 -1.3431 27 6 1.4494 -4.9691 -0.0979 28 1 -0.3634 -0.0940 -1.0233 29 1 -0.3634 -0.8391 0.5933 30 1 -0.3633 0.9333 0.4302 31 1 1.6085 2.0284 -0.5138 32 1 3.1499 1.1383 -0.5139 33 1 0.7998 3.0527 1.8079 34 1 3.9885 1.8401 4.2621 35 1 4.0597 -3.3392 -0.5813 36 1 3.7672 -3.2929 1.1798 37 1 4.5172 -5.4982 1.1200 38 1 4.1405 -5.6713 -0.6257 39 1 1.2691 -6.0835 2.3570 40 1 -0.7925 -7.8644 0.9111 41 1 0.4586 -4.9715 0.3563 42 1 1.3891 -5.2839 -1.1397 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001118463271.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:26:24 Heat of formation + Delta-G solvation = -60.585826 kcal Electronic energy + Delta-G solvation = -27937.141116 eV Core-core repulsion = 23918.171891 eV Total energy + Delta-G solvation = -4018.969225 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 322.147 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -43.01199 -41.88097 -40.08327 -38.91182 -37.14548 -35.91882 -34.25922 -33.45334 -31.96440 -31.84832 -29.72587 -28.18777 -28.08489 -26.88434 -24.84104 -23.21236 -22.37463 -21.81182 -21.52538 -20.33006 -19.14661 -18.99375 -18.35960 -18.03554 -17.34781 -17.12122 -16.91283 -16.28878 -16.15345 -15.85725 -15.43936 -15.09341 -14.90024 -14.83695 -14.70357 -14.43482 -14.19242 -13.97037 -13.77079 -13.58064 -13.46814 -13.30726 -13.07877 -12.86592 -12.64548 -12.38450 -12.30130 -12.20952 -12.10226 -11.22755 -11.08546 -10.99302 -10.72199 -10.51594 -10.34305 -10.07332 -9.59337 -9.41204 -8.26997 -6.43730 0.30530 0.82112 1.39874 1.44217 1.46586 1.55486 2.05833 2.16166 2.29374 2.36307 2.46851 2.99158 3.12802 3.74817 3.75085 3.96814 4.02661 4.03686 4.13364 4.26267 4.29848 4.49906 4.51040 4.62977 4.63262 4.70938 4.73527 4.93697 5.01081 5.04324 5.10712 5.19976 5.30281 5.32673 5.41692 5.72906 5.76055 5.84477 6.03222 6.28801 6.46529 6.53862 6.65676 6.88935 7.08711 7.24253 7.33020 8.78710 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.024016 B = 0.003119 C = 0.003014 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1165.620542 B = 8973.886989 C = 9286.508246 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.080 3.920 2 N -0.577 5.577 3 C 0.190 3.810 4 C -0.052 4.052 5 C -0.022 4.022 6 N -0.536 5.536 7 C 0.188 3.812 8 N -0.556 5.556 9 H 0.429 0.571 10 C 0.514 3.486 11 O -0.529 6.529 12 C 0.497 3.503 13 O -0.549 6.549 14 N -0.585 5.585 15 C 0.122 3.878 16 C -0.116 4.116 17 C 0.233 3.767 18 O -0.588 6.588 19 C -0.555 4.555 20 H 0.069 0.931 21 C 0.028 3.972 22 N -0.914 5.914 23 Si 0.964 3.036 24 H -0.265 1.265 25 H -0.281 1.281 26 H -0.281 1.281 27 C 0.109 3.891 28 H 0.070 0.930 29 H 0.062 0.938 30 H 0.102 0.898 31 H 0.146 0.854 32 H 0.096 0.904 33 H 0.187 0.813 34 H 0.237 0.763 35 H 0.086 0.914 36 H 0.066 0.934 37 H 0.084 0.916 38 H 0.091 0.909 39 H 0.374 0.626 40 H 0.270 0.730 41 H 0.057 0.943 42 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.449 17.247 -1.989 18.197 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 N -0.310 5.310 3 C 0.068 3.932 4 C -0.170 4.170 5 C -0.171 4.171 6 N -0.256 5.256 7 C -0.096 4.096 8 N -0.158 5.158 9 H 0.268 0.732 10 C 0.297 3.703 11 O -0.406 6.406 12 C 0.281 3.719 13 O -0.429 6.429 14 N -0.317 5.317 15 C 0.000 4.000 16 C -0.153 4.153 17 C 0.192 3.808 18 O -0.395 6.395 19 C -0.593 4.593 20 H 0.087 0.913 21 C -0.173 4.173 22 N -0.553 5.553 23 Si 0.790 3.210 24 H -0.189 1.189 25 H -0.207 1.207 26 H -0.207 1.207 27 C -0.013 4.013 28 H 0.088 0.912 29 H 0.081 0.919 30 H 0.120 0.880 31 H 0.164 0.836 32 H 0.114 0.886 33 H 0.204 0.796 34 H 0.253 0.747 35 H 0.105 0.895 36 H 0.085 0.915 37 H 0.103 0.897 38 H 0.110 0.890 39 H 0.223 0.777 40 H 0.079 0.921 41 H 0.075 0.925 42 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 5.537 18.032 -1.384 18.914 hybrid contribution -0.520 -2.194 -0.778 2.385 sum 5.017 15.838 -2.162 16.754 Atomic orbital electron populations 1.22181 0.76496 1.04040 1.03427 1.47879 1.08956 1.04433 1.69706 1.20162 0.99277 0.84227 0.89554 1.21793 0.93635 1.04571 0.96968 1.22529 1.02199 1.02124 0.90270 1.70301 1.09298 1.23945 1.22054 1.25650 0.98331 0.95001 0.90644 1.43459 1.22923 1.36812 1.12648 0.73207 1.19898 0.87236 0.85095 0.78116 1.90659 1.13663 1.87184 1.49087 1.20246 0.87121 0.85047 0.79513 1.90692 1.15082 1.87132 1.50004 1.48712 1.11241 1.05692 1.66041 1.22119 0.79187 0.97029 1.01650 1.22718 0.97183 0.92831 1.02606 1.19864 0.90374 0.91936 0.78577 1.86120 1.37725 1.89918 1.25785 1.21782 0.97230 0.98074 1.42195 0.91271 1.25800 0.95145 1.02329 0.94011 1.69827 1.01931 1.38665 1.44894 0.85405 0.78297 0.79439 0.77876 1.18898 1.20694 1.20696 1.22998 0.98787 0.79441 1.00101 0.91181 0.91934 0.87961 0.83587 0.88601 0.79582 0.74734 0.89542 0.91543 0.89718 0.89027 0.77746 0.92057 0.92451 0.92769 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.72 9.23 127.77 1.18 2.90 16 2 N -0.58 -13.33 2.86 -852.73 -2.44 -15.76 16 3 C 0.19 3.04 5.90 85.63 0.50 3.55 16 4 C -0.05 -1.00 6.82 40.95 0.28 -0.72 16 5 C -0.02 -0.45 11.79 83.52 0.98 0.54 16 6 N -0.54 -12.89 11.25 -200.31 -2.25 -15.14 16 7 C 0.19 3.57 13.04 180.26 2.35 5.93 16 8 N -0.56 -10.42 6.15 -186.50 -1.15 -11.57 16 9 H 0.43 7.24 8.96 -92.71 -0.83 6.41 16 10 C 0.51 15.76 7.68 87.27 0.67 16.43 16 11 O -0.53 -16.15 13.80 -3.26 -0.04 -16.19 16 12 C 0.50 19.16 7.73 87.27 0.67 19.84 16 13 O -0.55 -23.04 13.64 -3.25 -0.04 -23.08 16 14 N -0.58 -23.97 3.33 -813.41 -2.70 -26.67 16 15 C 0.12 4.38 5.49 86.73 0.48 4.85 16 16 C -0.12 -4.46 6.13 31.78 0.19 -4.27 16 17 C 0.23 11.09 0.87 -10.15 -0.01 11.08 16 18 O -0.59 -29.84 13.16 -148.98 -1.96 -31.80 16 19 C -0.55 -28.24 8.27 25.60 0.21 -28.03 16 20 H 0.07 3.43 7.79 -2.91 -0.02 3.41 16 21 C 0.03 1.44 5.29 84.65 0.45 1.89 16 22 N -0.91 -48.39 10.69 21.45 0.23 -48.16 16 23 Si 0.96 40.85 29.54 68.60 2.03 42.88 16 24 H -0.26 -10.86 7.11 99.48 0.71 -10.15 16 25 H -0.28 -11.83 7.11 99.48 0.71 -11.12 16 26 H -0.28 -11.81 7.11 99.48 0.71 -11.10 16 27 C 0.11 5.17 5.38 86.85 0.47 5.64 16 28 H 0.07 1.45 8.10 -2.39 -0.02 1.43 16 29 H 0.06 1.80 5.95 -2.39 -0.01 1.79 16 30 H 0.10 1.46 8.03 -2.38 -0.02 1.44 16 31 H 0.15 1.27 8.07 -2.39 -0.02 1.25 16 32 H 0.10 1.55 7.50 -2.39 -0.02 1.53 16 33 H 0.19 2.81 8.06 -2.91 -0.02 2.79 16 34 H 0.24 2.62 8.06 -2.91 -0.02 2.60 16 35 H 0.09 2.75 7.59 -2.39 -0.02 2.74 16 36 H 0.07 2.37 7.71 -2.39 -0.02 2.35 16 37 H 0.08 3.10 8.14 -2.38 -0.02 3.08 16 38 H 0.09 3.26 8.03 -2.39 -0.02 3.25 16 39 H 0.37 19.73 7.56 -74.06 -0.56 19.17 16 40 H 0.27 13.69 8.31 -92.71 -0.77 12.92 16 41 H 0.06 3.08 7.33 -2.39 -0.02 3.06 16 42 H 0.05 2.65 8.03 -2.39 -0.02 2.63 16 Total: -1.00 -66.19 352.59 -0.21 -66.40 By element: Atomic # 1 Polarization: 39.79 SS G_CDS: -0.31 Total: 39.48 kcal Atomic # 6 Polarization: 31.19 SS G_CDS: 8.43 Total: 39.62 kcal Atomic # 7 Polarization: -109.00 SS G_CDS: -8.31 Total: -117.31 kcal Atomic # 8 Polarization: -69.03 SS G_CDS: -2.05 Total: -71.08 kcal Atomic # 14 Polarization: 40.85 SS G_CDS: 2.03 Total: 42.88 kcal Total: -66.19 -0.21 -66.40 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001118463271.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.819 kcal (2) G-P(sol) polarization free energy of solvation -66.190 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.371 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.215 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.405 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.586 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds