Wall clock time and date at job start Fri Apr 10 2020 18:26:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08999 * 109.99863 * 2 1 4 4 C 1.54336 * 109.78052 * 121.16009 * 2 1 3 5 5 H 1.09004 * 110.51939 * 215.80881 * 4 2 1 6 6 N 1.46899 * 111.00081 * 338.95827 * 4 2 1 7 7 C 1.46894 * 110.99930 * 200.23210 * 6 4 2 8 8 C 1.50704 * 109.47030 * 180.02562 * 7 6 4 9 9 O 1.21288 * 119.99913 * 359.97438 * 8 7 6 10 10 N 1.34780 * 120.00183 * 180.02562 * 8 7 6 11 11 C 1.37091 * 120.00199 * 179.97438 * 10 8 7 12 12 H 1.08000 * 120.00334 * 0.02562 * 11 10 8 13 13 C 1.38951 * 120.00209 * 179.97438 * 11 10 8 14 14 N 1.31406 * 120.00058 * 179.97438 * 13 11 10 15 15 Si 1.86807 * 119.99871 * 0.02562 * 13 11 10 16 16 H 1.48491 * 109.47240 * 89.99157 * 15 13 11 17 17 H 1.48501 * 109.46949 * 209.99577 * 15 13 11 18 18 H 1.48508 * 109.46684 * 329.99122 * 15 13 11 19 19 C 1.55162 * 103.01895 * 97.49733 * 4 2 1 20 20 C 1.54907 * 101.58141 * 35.31036 * 19 4 2 21 21 N 1.47024 * 109.88323 * 238.89927 * 2 1 3 22 22 C 1.34777 * 125.64634 * 59.56366 * 21 2 1 23 23 O 1.21503 * 119.99892 * 359.71230 * 22 21 2 24 24 C 1.48329 * 119.99999 * 179.97438 * 22 21 2 25 25 C 1.42268 * 126.93781 * 179.43261 * 24 22 21 26 26 C 1.35318 * 103.92043 * 179.85802 * 25 24 22 27 27 O 1.34013 * 106.67050 * 0.40002 * 26 25 24 28 28 N 1.20905 * 111.83953 * 359.72964 * 27 26 25 29 29 H 1.08997 * 109.47422 * 179.64642 * 1 2 3 30 30 H 1.09000 * 109.47223 * 299.64661 * 1 2 3 31 31 H 1.08999 * 109.46823 * 59.64486 * 1 2 3 32 32 H 1.00907 * 111.00122 * 76.27943 * 6 4 2 33 33 H 1.09005 * 109.47357 * 299.99862 * 7 6 4 34 34 H 1.08995 * 109.47639 * 60.00312 * 7 6 4 35 35 H 0.96999 * 119.99672 * 359.97438 * 10 8 7 36 36 H 0.97008 * 120.00077 * 180.02562 * 14 13 11 37 37 H 1.09006 * 111.00329 * 277.23292 * 19 4 2 38 38 H 1.08998 * 111.00516 * 153.38486 * 19 4 2 39 39 H 1.09006 * 110.36471 * 204.15456 * 20 19 4 40 40 H 1.08999 * 110.36920 * 81.82885 * 20 19 4 41 41 H 1.08006 * 128.04186 * 0.02562 * 25 24 22 42 42 H 1.08001 * 126.66415 * 180.13247 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9027 1.0243 0.0000 4 6 2.0523 -0.7515 1.2428 5 1 2.9606 -0.2814 1.6197 6 7 1.0260 -0.8106 2.2921 7 6 1.6300 -1.0744 3.6049 8 6 0.5490 -1.1285 4.6535 9 8 -0.6105 -0.9631 4.3383 10 7 0.8706 -1.3597 5.9418 11 6 -0.1127 -1.4084 6.8958 12 1 -1.1452 -1.2620 6.6150 13 6 0.2189 -1.6473 8.2238 14 7 -0.7237 -1.6935 9.1383 15 14 2.0047 -1.9014 8.7094 16 1 2.6159 -0.5920 9.0512 17 1 2.0738 -2.8026 9.8877 18 1 2.7440 -2.5119 7.5753 19 6 2.3562 -2.1697 0.6916 20 6 2.8614 -1.8466 -0.7367 21 7 2.0300 -0.7142 -1.1839 22 6 1.7754 -0.3846 -2.4657 23 8 1.0734 0.5744 -2.7184 24 6 2.3474 -1.1960 -3.5677 25 6 2.1668 -0.9901 -4.9638 26 6 2.8871 -1.9830 -5.5352 27 8 3.4219 -2.6952 -4.5338 28 7 3.1161 -2.2502 -3.4520 29 1 -0.3634 -1.0276 -0.0063 30 1 -0.3634 0.5083 0.8931 31 1 -0.3633 0.5193 -0.8868 32 1 0.3232 -1.5005 2.0722 33 1 2.1570 -2.0282 3.5774 34 1 2.3330 -0.2778 3.8482 35 1 1.7979 -1.4917 6.1939 36 1 -0.4921 -1.8599 10.0655 37 1 1.4521 -2.7778 0.6581 38 1 3.1328 -2.6591 1.2793 39 1 2.7178 -2.7049 -1.3931 40 1 3.9124 -1.5589 -0.7114 41 1 1.5910 -0.2189 -5.4538 42 1 3.0044 -2.1682 -6.5927 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001178217248.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:26:39 Heat of formation + Delta-G solvation = 19.816784 kcal Electronic energy + Delta-G solvation = -26739.743157 eV Core-core repulsion = 22724.260451 eV Total energy + Delta-G solvation = -4015.482706 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 322.147 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -45.51242 -40.56412 -38.67980 -37.91267 -34.97070 -34.38189 -33.86983 -32.37536 -31.69248 -31.28039 -30.63638 -26.98432 -25.55163 -25.07754 -23.59541 -23.49259 -22.79157 -20.85244 -19.55858 -19.37849 -18.50779 -18.25610 -18.17785 -17.38402 -16.25162 -16.09492 -15.88218 -15.50313 -14.83849 -14.81543 -14.54535 -14.06171 -13.88972 -13.78845 -13.53035 -13.28146 -13.01354 -12.91378 -12.59634 -12.45761 -12.30325 -12.10365 -12.00181 -11.66934 -11.48288 -11.17696 -10.98962 -10.91638 -10.82138 -10.61455 -10.36567 -10.22984 -9.99210 -9.59299 -8.96202 -8.63486 -8.22657 -8.17838 -6.32607 -3.84196 0.72823 1.27441 2.38241 2.72330 2.84255 3.00363 3.05403 3.13663 3.49444 3.71069 3.92602 4.07671 4.08914 4.29820 4.48672 4.56363 4.73900 4.80668 4.88979 4.93256 5.00501 5.06905 5.20415 5.34300 5.39442 5.45100 5.50515 5.55653 5.62061 5.72455 5.77282 5.83186 5.90965 6.04622 6.29818 6.50629 6.99419 7.12135 7.45408 7.51181 7.56158 7.78653 8.12656 8.57639 8.93278 9.40483 9.80232 10.80431 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.032712 B = 0.002254 C = 0.002161 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 855.756483 B =12417.619088 C =12951.859232 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.145 3.855 3 H 0.083 0.917 4 C 0.083 3.917 5 H 0.096 0.904 6 N -0.653 5.653 7 C 0.048 3.952 8 C 0.449 3.551 9 O -0.564 6.564 10 N -0.590 5.590 11 C -0.305 4.305 12 H 0.120 0.880 13 C 0.041 3.959 14 N -0.881 5.881 15 Si 0.880 3.120 16 H -0.270 1.270 17 H -0.277 1.277 18 H -0.270 1.270 19 C -0.168 4.168 20 C 0.101 3.899 21 N -0.600 5.600 22 C 0.611 3.389 23 O -0.519 6.519 24 C -0.022 4.022 25 C -0.185 4.185 26 C -0.058 4.058 27 O 0.118 5.882 28 N -0.330 5.330 29 H 0.050 0.950 30 H 0.091 0.909 31 H 0.061 0.939 32 H 0.356 0.644 33 H 0.047 0.953 34 H 0.089 0.911 35 H 0.370 0.630 36 H 0.273 0.727 37 H 0.080 0.920 38 H 0.087 0.913 39 H 0.089 0.911 40 H 0.072 0.928 41 H 0.182 0.818 42 H 0.225 0.775 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.536 -2.323 -27.442 30.686 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C 0.043 3.957 3 H 0.101 0.899 4 C -0.029 4.029 5 H 0.114 0.886 6 N -0.285 5.285 7 C -0.085 4.085 8 C 0.235 3.765 9 O -0.446 6.446 10 N -0.229 5.229 11 C -0.434 4.434 12 H 0.137 0.863 13 C -0.162 4.162 14 N -0.521 5.521 15 Si 0.707 3.293 16 H -0.196 1.196 17 H -0.202 1.202 18 H -0.195 1.195 19 C -0.208 4.208 20 C -0.022 4.022 21 N -0.334 5.334 22 C 0.397 3.603 23 O -0.394 6.394 24 C -0.181 4.181 25 C -0.207 4.207 26 C -0.139 4.139 27 O 0.043 5.957 28 N -0.032 5.032 29 H 0.069 0.931 30 H 0.109 0.891 31 H 0.080 0.920 32 H 0.177 0.823 33 H 0.065 0.935 34 H 0.107 0.893 35 H 0.203 0.797 36 H 0.084 0.916 37 H 0.099 0.901 38 H 0.106 0.894 39 H 0.107 0.893 40 H 0.090 0.910 41 H 0.199 0.801 42 H 0.241 0.759 Dipole moment (debyes) X Y Z Total from point charges 12.705 -1.632 -26.406 29.349 hybrid contribution 1.337 -0.736 -0.115 1.531 sum 14.043 -2.369 -26.521 30.103 Atomic orbital electron populations 1.21980 0.93266 1.02351 1.03710 1.21594 0.96207 0.95577 0.82371 0.89885 1.22622 0.95165 0.93928 0.91199 0.88585 1.60038 1.12657 1.56085 0.99725 1.21741 0.96682 1.00468 0.89609 1.19675 0.89770 0.84034 0.83040 1.90575 1.20130 1.53299 1.80561 1.42198 1.08720 1.65006 1.07013 1.19427 0.91313 1.46335 0.86304 0.86268 1.25050 0.97982 0.97652 0.95532 1.69622 1.32207 1.48354 1.01867 0.86662 0.84622 0.78984 0.79038 1.19591 1.20203 1.19549 1.23616 1.02767 0.98841 0.95554 1.22450 0.94602 0.89397 0.95796 1.48431 1.49666 1.30639 1.04683 1.16444 0.80449 0.83346 0.80107 1.90813 1.37829 1.27874 1.82834 1.23587 1.01843 0.96863 0.95825 1.22796 1.03975 1.02513 0.91444 1.26066 0.97928 0.93439 0.96467 1.84814 1.54928 1.45567 1.10349 1.74268 1.13852 1.11113 1.03919 0.93099 0.89056 0.91953 0.82258 0.93549 0.89294 0.79697 0.91598 0.90117 0.89426 0.89275 0.90967 0.80106 0.75886 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.09 8.20 37.16 0.30 -1.79 16 2 C 0.15 1.76 3.49 -66.95 -0.23 1.52 16 3 H 0.08 1.03 8.14 -51.93 -0.42 0.61 16 4 C 0.08 0.91 3.09 -65.87 -0.20 0.71 16 5 H 0.10 0.96 7.89 -51.93 -0.41 0.55 16 6 N -0.65 -9.36 4.52 -106.05 -0.48 -9.84 16 7 C 0.05 0.73 6.02 -4.98 -0.03 0.70 16 8 C 0.45 9.88 7.82 -10.98 -0.09 9.79 16 9 O -0.56 -14.82 15.78 5.55 0.09 -14.74 16 10 N -0.59 -13.76 5.09 -10.96 -0.06 -13.82 16 11 C -0.31 -8.55 10.16 -14.94 -0.15 -8.70 16 12 H 0.12 3.83 7.39 -52.49 -0.39 3.45 16 13 C 0.04 1.11 5.50 -17.47 -0.10 1.02 16 14 N -0.88 -25.62 13.96 55.50 0.77 -24.85 16 15 Si 0.88 19.14 27.74 -169.99 -4.71 14.43 16 16 H -0.27 -5.78 7.11 56.52 0.40 -5.38 16 17 H -0.28 -6.05 7.11 56.52 0.40 -5.65 16 18 H -0.27 -5.30 6.52 56.52 0.37 -4.93 16 19 C -0.17 -1.58 6.63 -24.58 -0.16 -1.74 16 20 C 0.10 0.96 6.18 -2.53 -0.02 0.94 16 21 N -0.60 -6.99 3.08 -163.93 -0.50 -7.50 16 22 C 0.61 7.85 7.66 -12.11 -0.09 7.76 16 23 O -0.52 -8.01 15.84 5.36 0.08 -7.93 16 24 C -0.02 -0.23 7.02 -82.53 -0.58 -0.81 16 25 C -0.18 -1.35 10.99 -39.08 -0.43 -1.78 16 26 C -0.06 -0.26 12.28 29.69 0.36 0.10 16 27 O 0.12 0.85 11.18 17.25 0.19 1.04 16 28 N -0.33 -3.15 9.30 33.29 0.31 -2.84 16 29 H 0.05 0.68 7.85 -51.93 -0.41 0.27 16 30 H 0.09 1.35 7.45 -51.93 -0.39 0.96 16 31 H 0.06 0.90 6.73 -51.93 -0.35 0.56 16 32 H 0.36 5.43 7.26 -39.29 -0.29 5.14 16 33 H 0.05 0.61 8.13 -51.93 -0.42 0.19 16 34 H 0.09 1.21 8.08 -51.93 -0.42 0.79 16 35 H 0.37 7.54 5.76 -40.82 -0.24 7.30 16 36 H 0.27 7.34 8.31 -40.82 -0.34 7.00 16 37 H 0.08 0.82 7.82 -51.93 -0.41 0.41 16 38 H 0.09 0.70 8.14 -51.93 -0.42 0.28 16 39 H 0.09 0.86 6.23 -51.93 -0.32 0.54 16 40 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 41 H 0.18 1.07 8.06 -52.48 -0.42 0.65 16 42 H 0.22 -0.10 8.06 -52.49 -0.42 -0.52 16 LS Contribution 351.71 15.07 5.30 5.30 Total: -1.00 -34.86 351.71 -5.73 -40.59 By element: Atomic # 1 Polarization: 17.74 SS G_CDS: -5.32 Total: 12.42 kcal Atomic # 6 Polarization: 9.14 SS G_CDS: -1.41 Total: 7.72 kcal Atomic # 7 Polarization: -58.89 SS G_CDS: 0.04 Total: -58.84 kcal Atomic # 8 Polarization: -21.99 SS G_CDS: 0.37 Total: -21.62 kcal Atomic # 14 Polarization: 19.14 SS G_CDS: -4.71 Total: 14.43 kcal Total LS contribution 5.30 Total: 5.30 kcal Total: -34.86 -5.73 -40.59 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001178217248.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.409 kcal (2) G-P(sol) polarization free energy of solvation -34.859 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.550 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.733 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.592 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.817 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds