Wall clock time and date at job start Fri Apr 10 2020 18:26:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08999 * 109.99863 * 2 1 4 4 C 1.54336 * 109.78052 * 121.16009 * 2 1 3 5 5 H 1.09004 * 110.51939 * 215.80881 * 4 2 1 6 6 N 1.46899 * 111.00081 * 338.95827 * 4 2 1 7 7 C 1.46894 * 110.99930 * 200.23210 * 6 4 2 8 8 C 1.50704 * 109.47030 * 180.02562 * 7 6 4 9 9 O 1.21288 * 119.99913 * 359.97438 * 8 7 6 10 10 N 1.34780 * 120.00183 * 180.02562 * 8 7 6 11 11 C 1.37091 * 120.00199 * 179.97438 * 10 8 7 12 12 H 1.08000 * 120.00334 * 0.02562 * 11 10 8 13 13 C 1.38951 * 120.00209 * 179.97438 * 11 10 8 14 14 N 1.31406 * 120.00058 * 179.97438 * 13 11 10 15 15 Si 1.86807 * 119.99871 * 0.02562 * 13 11 10 16 16 H 1.48491 * 109.47240 * 89.99157 * 15 13 11 17 17 H 1.48501 * 109.46949 * 209.99577 * 15 13 11 18 18 H 1.48508 * 109.46684 * 329.99122 * 15 13 11 19 19 C 1.55162 * 103.01895 * 97.49733 * 4 2 1 20 20 C 1.54907 * 101.58141 * 35.31036 * 19 4 2 21 21 N 1.47024 * 109.88323 * 238.89927 * 2 1 3 22 22 C 1.34777 * 125.64634 * 59.56366 * 21 2 1 23 23 O 1.21503 * 119.99892 * 359.71230 * 22 21 2 24 24 C 1.48329 * 119.99999 * 179.97438 * 22 21 2 25 25 C 1.42268 * 126.93781 * 179.43261 * 24 22 21 26 26 C 1.35318 * 103.92043 * 179.85802 * 25 24 22 27 27 O 1.34013 * 106.67050 * 0.40002 * 26 25 24 28 28 N 1.20905 * 111.83953 * 359.72964 * 27 26 25 29 29 H 1.08997 * 109.47422 * 179.64642 * 1 2 3 30 30 H 1.09000 * 109.47223 * 299.64661 * 1 2 3 31 31 H 1.08999 * 109.46823 * 59.64486 * 1 2 3 32 32 H 1.00907 * 111.00122 * 76.27943 * 6 4 2 33 33 H 1.09005 * 109.47357 * 299.99862 * 7 6 4 34 34 H 1.08995 * 109.47639 * 60.00312 * 7 6 4 35 35 H 0.96999 * 119.99672 * 359.97438 * 10 8 7 36 36 H 0.97008 * 120.00077 * 180.02562 * 14 13 11 37 37 H 1.09006 * 111.00329 * 277.23292 * 19 4 2 38 38 H 1.08998 * 111.00516 * 153.38486 * 19 4 2 39 39 H 1.09006 * 110.36471 * 204.15456 * 20 19 4 40 40 H 1.08999 * 110.36920 * 81.82885 * 20 19 4 41 41 H 1.08006 * 128.04186 * 0.02562 * 25 24 22 42 42 H 1.08001 * 126.66415 * 180.13247 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9027 1.0243 0.0000 4 6 2.0523 -0.7515 1.2428 5 1 2.9606 -0.2814 1.6197 6 7 1.0260 -0.8106 2.2921 7 6 1.6300 -1.0744 3.6049 8 6 0.5490 -1.1285 4.6535 9 8 -0.6105 -0.9631 4.3383 10 7 0.8706 -1.3597 5.9418 11 6 -0.1127 -1.4084 6.8958 12 1 -1.1452 -1.2620 6.6150 13 6 0.2189 -1.6473 8.2238 14 7 -0.7237 -1.6935 9.1383 15 14 2.0047 -1.9014 8.7094 16 1 2.6159 -0.5920 9.0512 17 1 2.0738 -2.8026 9.8877 18 1 2.7440 -2.5119 7.5753 19 6 2.3562 -2.1697 0.6916 20 6 2.8614 -1.8466 -0.7367 21 7 2.0300 -0.7142 -1.1839 22 6 1.7754 -0.3846 -2.4657 23 8 1.0734 0.5744 -2.7184 24 6 2.3474 -1.1960 -3.5677 25 6 2.1668 -0.9901 -4.9638 26 6 2.8871 -1.9830 -5.5352 27 8 3.4219 -2.6952 -4.5338 28 7 3.1161 -2.2502 -3.4520 29 1 -0.3634 -1.0276 -0.0063 30 1 -0.3634 0.5083 0.8931 31 1 -0.3633 0.5193 -0.8868 32 1 0.3232 -1.5005 2.0722 33 1 2.1570 -2.0282 3.5774 34 1 2.3330 -0.2778 3.8482 35 1 1.7979 -1.4917 6.1939 36 1 -0.4921 -1.8599 10.0655 37 1 1.4521 -2.7778 0.6581 38 1 3.1328 -2.6591 1.2793 39 1 2.7178 -2.7049 -1.3931 40 1 3.9124 -1.5589 -0.7114 41 1 1.5910 -0.2189 -5.4538 42 1 3.0044 -2.1682 -6.5927 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001178217248.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:26:38 Heat of formation + Delta-G solvation = -7.886942 kcal Electronic energy + Delta-G solvation = -26740.944481 eV Core-core repulsion = 22724.260451 eV Total energy + Delta-G solvation = -4016.684030 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 322.147 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -46.11621 -41.50267 -40.28014 -39.08535 -36.26903 -35.69280 -35.00949 -33.73996 -32.99148 -32.20038 -31.64362 -28.43285 -26.55876 -26.26569 -25.03753 -24.11343 -23.50526 -21.64122 -21.30086 -20.39868 -20.25391 -19.04517 -18.79885 -18.21043 -17.68064 -17.23596 -16.90601 -16.79627 -16.46191 -15.96376 -15.45518 -15.24166 -15.02494 -14.79711 -14.60464 -14.42587 -14.25311 -14.12020 -13.90465 -13.77024 -13.50551 -13.21290 -13.05649 -12.84202 -12.76329 -12.39943 -12.39167 -11.98638 -11.91967 -11.76623 -11.52359 -11.49859 -11.37322 -10.71821 -10.43111 -10.23661 -9.89504 -9.32000 -8.40130 -6.01178 0.05763 0.77611 1.31067 1.37526 1.46018 1.54798 1.97567 1.98146 2.24464 2.29807 2.69779 2.79116 3.16362 3.26244 3.43501 3.57314 3.73009 3.94026 4.00632 4.08592 4.17592 4.23029 4.24907 4.36639 4.48415 4.57005 4.57925 4.61136 4.66452 4.78518 4.92614 4.97466 4.99936 5.01261 5.28082 5.33277 5.53687 5.90396 6.02968 6.22049 6.29653 6.60885 6.74710 6.89751 7.06897 7.41457 7.98709 8.77565 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.032712 B = 0.002254 C = 0.002161 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 855.756483 B =12417.619088 C =12951.859232 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.143 3.857 3 H 0.078 0.922 4 C 0.091 3.909 5 H 0.120 0.880 6 N -0.671 5.671 7 C 0.063 3.937 8 C 0.448 3.552 9 O -0.616 6.616 10 N -0.591 5.591 11 C -0.328 4.328 12 H 0.053 0.947 13 C -0.018 4.018 14 N -0.936 5.936 15 Si 0.967 3.033 16 H -0.258 1.258 17 H -0.277 1.277 18 H -0.227 1.227 19 C -0.158 4.158 20 C 0.104 3.896 21 N -0.601 5.601 22 C 0.603 3.397 23 O -0.559 6.559 24 C -0.053 4.053 25 C -0.207 4.207 26 C -0.022 4.022 27 O 0.125 5.875 28 N -0.343 5.343 29 H 0.046 0.954 30 H 0.074 0.926 31 H 0.045 0.955 32 H 0.348 0.652 33 H 0.085 0.915 34 H 0.120 0.880 35 H 0.391 0.609 36 H 0.278 0.722 37 H 0.070 0.930 38 H 0.114 0.886 39 H 0.088 0.912 40 H 0.088 0.912 41 H 0.188 0.812 42 H 0.278 0.722 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.257 -3.757 -29.176 34.622 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C 0.040 3.960 3 H 0.096 0.904 4 C -0.020 4.020 5 H 0.138 0.862 6 N -0.303 5.303 7 C -0.069 4.069 8 C 0.236 3.764 9 O -0.500 6.500 10 N -0.232 5.232 11 C -0.457 4.457 12 H 0.071 0.929 13 C -0.217 4.217 14 N -0.577 5.577 15 Si 0.787 3.213 16 H -0.183 1.183 17 H -0.202 1.202 18 H -0.150 1.150 19 C -0.198 4.198 20 C -0.018 4.018 21 N -0.334 5.334 22 C 0.390 3.610 23 O -0.436 6.436 24 C -0.210 4.210 25 C -0.230 4.230 26 C -0.102 4.102 27 O 0.049 5.951 28 N -0.043 5.043 29 H 0.065 0.935 30 H 0.093 0.907 31 H 0.064 0.936 32 H 0.168 0.832 33 H 0.103 0.897 34 H 0.137 0.863 35 H 0.226 0.774 36 H 0.088 0.912 37 H 0.089 0.911 38 H 0.133 0.867 39 H 0.107 0.893 40 H 0.106 0.894 41 H 0.205 0.795 42 H 0.293 0.707 Dipole moment (debyes) X Y Z Total from point charges 17.461 -3.076 -28.147 33.266 hybrid contribution -0.271 -0.283 0.260 0.471 sum 17.191 -3.359 -27.886 32.931 Atomic orbital electron populations 1.21817 0.94908 1.01496 1.01980 1.21550 0.94863 0.95943 0.83614 0.90384 1.22619 0.94727 0.95105 0.89581 0.86177 1.59972 1.13754 1.56286 1.00299 1.21672 0.94175 1.03620 0.87392 1.21041 0.90740 0.80986 0.83661 1.90559 1.23237 1.54698 1.81515 1.42012 1.08640 1.65826 1.06771 1.18990 0.90001 1.48403 0.88321 0.92866 1.26166 1.04631 0.96278 0.94594 1.69815 1.35792 1.49483 1.02588 0.85336 0.76692 0.79579 0.79706 1.18265 1.20236 1.15023 1.23584 1.03189 0.97549 0.95487 1.22560 0.94966 0.88575 0.95726 1.48505 1.49560 1.31012 1.04284 1.16880 0.79988 0.83185 0.80924 1.90777 1.39651 1.29658 1.83560 1.23487 1.03459 0.97768 0.96321 1.23046 1.05499 1.04131 0.90366 1.26936 0.94779 0.90887 0.97608 1.84779 1.54437 1.45425 1.10504 1.74256 1.14015 1.10888 1.05152 0.93483 0.90682 0.93629 0.83212 0.89726 0.86251 0.77368 0.91206 0.91094 0.86726 0.89336 0.89382 0.79491 0.70667 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.09 8.20 71.98 0.59 -3.49 16 2 C 0.14 3.42 3.49 45.34 0.16 3.58 16 3 H 0.08 1.94 8.14 -2.39 -0.02 1.92 16 4 C 0.09 1.77 3.09 46.11 0.14 1.91 16 5 H 0.12 1.85 7.89 -2.38 -0.02 1.83 16 6 N -0.67 -18.19 4.52 -489.42 -2.21 -20.40 16 7 C 0.06 1.73 6.02 85.56 0.52 2.25 16 8 C 0.45 19.47 7.82 87.66 0.69 20.16 16 9 O -0.62 -33.65 15.78 -3.06 -0.05 -33.70 16 10 N -0.59 -27.08 5.09 -306.98 -1.56 -28.64 16 11 C -0.33 -19.07 10.16 84.04 0.85 -18.22 16 12 H 0.05 3.72 7.39 -2.91 -0.02 3.69 16 13 C -0.02 -1.01 5.50 84.93 0.47 -0.55 16 14 N -0.94 -56.50 13.96 21.66 0.30 -56.19 16 15 Si 0.97 38.12 27.74 68.60 1.90 40.02 16 16 H -0.26 -9.69 7.11 99.48 0.71 -8.98 16 17 H -0.28 -10.93 7.11 99.48 0.71 -10.22 16 18 H -0.23 -7.33 6.52 99.48 0.65 -6.68 16 19 C -0.16 -2.49 6.63 31.99 0.21 -2.27 16 20 C 0.10 1.74 6.18 86.85 0.54 2.28 16 21 N -0.60 -13.68 3.08 -790.85 -2.44 -16.12 16 22 C 0.60 15.77 7.66 86.93 0.67 16.43 16 23 O -0.56 -18.12 15.84 -3.73 -0.06 -18.18 16 24 C -0.05 -1.07 7.02 42.96 0.30 -0.77 16 25 C -0.21 -2.73 10.99 22.60 0.25 -2.48 16 26 C -0.02 -0.12 12.28 67.15 0.82 0.70 16 27 O 0.13 1.45 11.18 71.91 0.80 2.25 16 28 N -0.34 -5.97 9.30 -49.52 -0.46 -6.43 16 29 H 0.05 1.33 7.85 -2.39 -0.02 1.31 16 30 H 0.07 2.35 7.45 -2.39 -0.02 2.33 16 31 H 0.04 1.42 6.73 -2.39 -0.02 1.41 16 32 H 0.35 10.47 7.26 -89.69 -0.65 9.82 16 33 H 0.08 1.76 8.13 -2.38 -0.02 1.74 16 34 H 0.12 2.65 8.08 -2.39 -0.02 2.63 16 35 H 0.39 14.55 5.76 -92.71 -0.53 14.01 16 36 H 0.28 15.35 8.31 -92.70 -0.77 14.58 16 37 H 0.07 1.29 7.82 -2.38 -0.02 1.27 16 38 H 0.11 1.25 8.14 -2.39 -0.02 1.23 16 39 H 0.09 1.55 6.23 -2.38 -0.01 1.53 16 40 H 0.09 1.24 8.14 -2.39 -0.02 1.22 16 41 H 0.19 2.09 8.06 -2.91 -0.02 2.06 16 42 H 0.28 -1.77 8.06 -2.91 -0.02 -1.80 16 Total: -1.00 -85.21 351.71 2.27 -82.94 By element: Atomic # 1 Polarization: 35.08 SS G_CDS: -0.16 Total: 34.92 kcal Atomic # 6 Polarization: 13.32 SS G_CDS: 6.20 Total: 19.52 kcal Atomic # 7 Polarization: -121.42 SS G_CDS: -6.37 Total: -127.79 kcal Atomic # 8 Polarization: -50.32 SS G_CDS: 0.70 Total: -49.62 kcal Atomic # 14 Polarization: 38.12 SS G_CDS: 1.90 Total: 40.02 kcal Total: -85.21 2.27 -82.94 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001178217248.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.053 kcal (2) G-P(sol) polarization free energy of solvation -85.207 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.154 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.267 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.940 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.887 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds