Wall clock time and date at job start Fri Apr 10 2020 18:26:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08998 * 110.00292 * 2 1 4 4 C 1.54329 * 109.88272 * 121.09810 * 2 1 3 5 5 H 1.09002 * 110.72032 * 215.58441 * 4 2 1 6 6 N 1.46901 * 110.86959 * 338.78853 * 4 2 1 7 7 C 1.46902 * 110.99746 * 202.45261 * 6 4 2 8 8 C 1.50697 * 109.47091 * 179.97438 * 7 6 4 9 9 O 1.21290 * 120.00022 * 0.02562 * 8 7 6 10 10 N 1.34785 * 119.99704 * 179.97438 * 8 7 6 11 11 C 1.37093 * 119.99596 * 180.02562 * 10 8 7 12 12 H 1.08003 * 120.00108 * 0.02562 * 11 10 8 13 13 C 1.38950 * 120.00041 * 180.02562 * 11 10 8 14 14 N 1.31416 * 120.00416 * 179.97438 * 13 11 10 15 15 Si 1.86800 * 119.99827 * 0.02562 * 13 11 10 16 16 H 1.48506 * 109.47027 * 89.99837 * 15 13 11 17 17 H 1.48494 * 109.47070 * 209.99677 * 15 13 11 18 18 H 1.48497 * 109.47178 * 330.00080 * 15 13 11 19 19 C 1.55162 * 102.94140 * 97.22106 * 4 2 1 20 20 C 1.54904 * 101.58121 * 35.50310 * 19 4 2 21 21 N 1.47024 * 109.88108 * 238.90148 * 2 1 3 22 22 C 1.34774 * 125.64350 * 59.48913 * 21 2 1 23 23 O 1.21686 * 120.00587 * 0.02562 * 22 21 2 24 24 C 1.46723 * 119.99955 * 180.02562 * 22 21 2 25 25 C 1.36344 * 126.64783 * 179.97438 * 24 22 21 26 26 N 1.33690 * 107.45379 * 179.97438 * 25 24 22 27 27 C 1.30611 * 108.99550 * 0.02562 * 26 25 24 28 28 O 1.33669 * 109.15666 * 359.75000 * 27 26 25 29 29 H 1.09001 * 109.46858 * 298.90106 * 1 2 3 30 30 H 1.08999 * 109.47027 * 58.90393 * 1 2 3 31 31 H 1.09000 * 109.47467 * 178.90865 * 1 2 3 32 32 H 1.00894 * 111.00335 * 78.50055 * 6 4 2 33 33 H 1.09003 * 109.47241 * 300.00265 * 7 6 4 34 34 H 1.09009 * 109.46890 * 59.99819 * 7 6 4 35 35 H 0.96993 * 119.99883 * 0.02562 * 10 8 7 36 36 H 0.96992 * 120.00186 * 179.97438 * 14 13 11 37 37 H 1.09000 * 110.99946 * 153.57687 * 19 4 2 38 38 H 1.09000 * 111.00168 * 277.42785 * 19 4 2 39 39 H 1.08998 * 110.36955 * 81.82737 * 20 19 4 40 40 H 1.09001 * 110.36825 * 204.15266 * 20 19 4 41 41 H 1.08000 * 126.26936 * 0.02562 * 25 24 22 42 42 H 1.08005 * 125.42013 * 180.02562 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9029 1.0242 0.0000 4 6 2.0549 -0.7496 1.2427 5 1 2.9658 -0.2833 1.6182 6 7 1.0295 -0.8033 2.2933 7 6 1.6390 -1.0123 3.6135 8 6 0.5589 -1.0612 4.6633 9 8 -0.6041 -0.9349 4.3431 10 7 0.8853 -1.2464 5.9578 11 6 -0.0973 -1.2914 6.9128 12 1 -1.1329 -1.1789 6.6277 13 6 0.2392 -1.4818 8.2474 14 7 -0.7026 -1.5244 9.1629 15 14 2.0305 -1.6756 8.7405 16 1 2.6078 -0.3412 9.0429 17 1 2.1215 -2.5389 9.9453 18 1 2.7860 -2.3007 7.6254 19 6 2.3518 -2.1696 0.6923 20 6 2.8567 -1.8499 -0.7368 21 7 2.0300 -0.7141 -1.1839 22 6 1.7742 -0.3853 -2.4656 23 8 1.0746 0.5776 -2.7188 24 6 2.3391 -1.1884 -3.5558 25 6 2.1692 -0.9803 -4.8925 26 7 2.8500 -1.9337 -5.5366 27 6 3.4252 -2.7117 -4.6592 28 8 3.1342 -2.2764 -3.4294 29 1 -0.3633 0.4967 0.8997 30 1 -0.3633 0.5308 -0.8800 31 1 -0.3634 -1.0275 -0.0196 32 1 0.3447 -1.5170 2.0941 33 1 2.1900 -1.9528 3.6145 34 1 2.3214 -0.1911 3.8327 35 1 1.8154 -1.3478 6.2137 36 1 -0.4678 -1.6577 10.0945 37 1 3.1270 -2.6619 1.2795 38 1 1.4451 -2.7737 0.6603 39 1 3.9091 -1.5668 -0.7129 40 1 2.7087 -2.7081 -1.3923 41 1 1.5912 -0.1896 -5.3476 42 1 4.0418 -3.5677 -4.8907 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001179253225.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:26:43 Heat of formation + Delta-G solvation = -20.683850 kcal Electronic energy + Delta-G solvation = -26765.150387 eV Core-core repulsion = 22747.911441 eV Total energy + Delta-G solvation = -4017.238945 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 322.147 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -43.87773 -40.56541 -38.70409 -37.96640 -35.51038 -34.83751 -33.90627 -31.83856 -31.63944 -31.16937 -30.18693 -26.96769 -25.42832 -24.81744 -23.64906 -23.13665 -22.86711 -21.00946 -19.68483 -19.43570 -18.53353 -18.22450 -17.42559 -17.32341 -16.28393 -16.15692 -15.90681 -15.50469 -14.85804 -14.81335 -14.78011 -14.17662 -14.09434 -13.80961 -13.60433 -13.28444 -13.03325 -12.87753 -12.64053 -12.49730 -12.37193 -12.05166 -11.97767 -11.71435 -11.61624 -11.28489 -11.19968 -11.02097 -10.96026 -10.63602 -10.44394 -10.01223 -9.61459 -9.61301 -9.00944 -8.66524 -8.26019 -8.20747 -6.34544 -3.86288 0.39615 1.95017 1.99992 2.59912 2.72968 2.98144 3.03485 3.11926 3.65221 3.68373 3.87026 4.06434 4.10528 4.22311 4.46992 4.50069 4.70059 4.83222 4.90440 4.98175 5.02697 5.04114 5.18009 5.27016 5.36621 5.42878 5.49447 5.57181 5.66373 5.69885 5.72947 5.76429 5.87735 6.01374 6.24970 6.48848 6.93783 6.97450 7.10867 7.41490 7.53952 7.63578 8.10473 8.55410 8.91177 9.38278 9.77769 10.78484 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.033197 B = 0.002254 C = 0.002164 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 843.257320 B =12417.434649 C =12934.990399 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.145 3.855 3 H 0.084 0.916 4 C 0.083 3.917 5 H 0.096 0.904 6 N -0.653 5.653 7 C 0.048 3.952 8 C 0.449 3.551 9 O -0.564 6.564 10 N -0.590 5.590 11 C -0.305 4.305 12 H 0.120 0.880 13 C 0.041 3.959 14 N -0.880 5.880 15 Si 0.881 3.119 16 H -0.270 1.270 17 H -0.277 1.277 18 H -0.270 1.270 19 C -0.167 4.167 20 C 0.101 3.899 21 N -0.604 5.604 22 C 0.621 3.379 23 O -0.510 6.510 24 C -0.101 4.101 25 C 0.050 3.950 26 N -0.494 5.494 27 C 0.195 3.805 28 O -0.189 6.189 29 H 0.092 0.908 30 H 0.062 0.938 31 H 0.050 0.950 32 H 0.356 0.644 33 H 0.046 0.954 34 H 0.089 0.911 35 H 0.370 0.630 36 H 0.274 0.726 37 H 0.088 0.912 38 H 0.081 0.919 39 H 0.074 0.926 40 H 0.083 0.917 41 H 0.197 0.803 42 H 0.256 0.744 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.376 -3.695 -23.554 27.841 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C 0.043 3.957 3 H 0.102 0.898 4 C -0.029 4.029 5 H 0.114 0.886 6 N -0.285 5.285 7 C -0.085 4.085 8 C 0.234 3.766 9 O -0.446 6.446 10 N -0.229 5.229 11 C -0.434 4.434 12 H 0.137 0.863 13 C -0.162 4.162 14 N -0.520 5.520 15 Si 0.707 3.293 16 H -0.196 1.196 17 H -0.202 1.202 18 H -0.196 1.196 19 C -0.207 4.207 20 C -0.022 4.022 21 N -0.338 5.338 22 C 0.408 3.592 23 O -0.388 6.388 24 C -0.156 4.156 25 C -0.093 4.093 26 N -0.222 5.222 27 C -0.030 4.030 28 O -0.075 6.075 29 H 0.110 0.890 30 H 0.081 0.919 31 H 0.069 0.931 32 H 0.178 0.822 33 H 0.064 0.936 34 H 0.107 0.893 35 H 0.203 0.797 36 H 0.084 0.916 37 H 0.106 0.894 38 H 0.100 0.900 39 H 0.092 0.908 40 H 0.101 0.899 41 H 0.214 0.786 42 H 0.271 0.729 Dipole moment (debyes) X Y Z Total from point charges 13.141 -2.516 -24.216 27.667 hybrid contribution 1.828 -1.301 1.173 2.531 sum 14.969 -3.817 -23.044 27.743 Atomic orbital electron populations 1.21983 0.93156 1.02359 1.03815 1.21608 0.96267 0.95621 0.82247 0.89798 1.22628 0.95167 0.93853 0.91281 0.88558 1.60027 1.13659 1.55230 0.99578 1.21751 0.96573 1.00727 0.89455 1.19669 0.89786 0.84108 0.83008 1.90578 1.19838 1.53500 1.80647 1.42200 1.08463 1.65718 1.06527 1.19428 0.91111 1.47028 0.85845 0.86260 1.25054 0.97998 0.97642 0.95523 1.69620 1.32219 1.48605 1.01563 0.86660 0.84623 0.78947 0.79050 1.19585 1.20203 1.19568 1.23607 1.02836 0.98928 0.95307 1.22395 0.94878 0.89032 0.95913 1.48478 1.49904 1.30537 1.04845 1.15934 0.80367 0.83157 0.79791 1.90915 1.38090 1.27273 1.82475 1.23226 1.02589 0.92400 0.97409 1.23622 0.98435 0.98311 0.88889 1.70467 1.11706 1.05523 1.34500 1.28456 0.98569 0.99809 0.76178 1.84609 1.51951 1.36628 1.34279 0.88966 0.91934 0.93093 0.82224 0.93554 0.89286 0.79700 0.91579 0.89383 0.89992 0.90804 0.89912 0.78572 0.72868 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.97 8.23 37.16 0.31 -1.66 16 2 C 0.15 1.61 3.48 -66.95 -0.23 1.38 16 3 H 0.08 0.96 8.14 -51.93 -0.42 0.54 16 4 C 0.08 0.83 3.12 -65.87 -0.21 0.62 16 5 H 0.10 0.86 7.86 -51.93 -0.41 0.45 16 6 N -0.65 -8.82 4.46 -106.04 -0.47 -9.30 16 7 C 0.05 0.70 6.04 -4.98 -0.03 0.67 16 8 C 0.45 9.63 7.82 -10.98 -0.09 9.54 16 9 O -0.56 -14.54 15.78 5.55 0.09 -14.46 16 10 N -0.59 -13.49 5.09 -10.96 -0.06 -13.55 16 11 C -0.31 -8.45 10.16 -14.93 -0.15 -8.60 16 12 H 0.12 3.80 7.39 -52.48 -0.39 3.41 16 13 C 0.04 1.10 5.50 -17.47 -0.10 1.01 16 14 N -0.88 -25.37 13.96 55.50 0.77 -24.59 16 15 Si 0.88 18.86 27.74 -169.99 -4.71 14.15 16 16 H -0.27 -5.70 7.11 56.52 0.40 -5.30 16 17 H -0.28 -5.97 7.11 56.52 0.40 -5.57 16 18 H -0.27 -5.20 6.52 56.52 0.37 -4.83 16 19 C -0.17 -1.33 6.66 -24.58 -0.16 -1.50 16 20 C 0.10 0.77 6.18 -2.53 -0.02 0.75 16 21 N -0.60 -6.22 3.08 -164.53 -0.51 -6.72 16 22 C 0.62 7.26 7.60 -12.83 -0.10 7.16 16 23 O -0.51 -7.39 15.80 5.20 0.08 -7.30 16 24 C -0.10 -0.98 6.96 -36.84 -0.26 -1.24 16 25 C 0.05 0.47 11.66 -17.42 -0.20 0.26 16 26 N -0.49 -4.30 11.26 -14.67 -0.17 -4.47 16 27 C 0.19 1.10 13.21 52.24 0.69 1.79 16 28 O -0.19 -1.41 8.07 4.41 0.04 -1.37 16 29 H 0.09 1.31 7.41 -51.93 -0.38 0.92 16 30 H 0.06 0.86 6.76 -51.93 -0.35 0.51 16 31 H 0.05 0.64 7.94 -51.93 -0.41 0.23 16 32 H 0.36 5.13 7.37 -39.29 -0.29 4.84 16 33 H 0.05 0.58 8.14 -51.93 -0.42 0.15 16 34 H 0.09 1.16 8.08 -51.92 -0.42 0.74 16 35 H 0.37 7.37 5.76 -40.82 -0.24 7.13 16 36 H 0.27 7.27 8.31 -40.82 -0.34 6.93 16 37 H 0.09 0.58 8.14 -51.93 -0.42 0.16 16 38 H 0.08 0.72 7.79 -51.93 -0.40 0.31 16 39 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 40 H 0.08 0.59 6.25 -51.93 -0.32 0.26 16 41 H 0.20 1.58 8.06 -52.49 -0.42 1.15 16 42 H 0.26 0.08 8.06 -52.48 -0.42 -0.34 16 LS Contribution 352.17 15.07 5.31 5.31 Total: -1.00 -34.87 352.17 -5.49 -40.37 By element: Atomic # 1 Polarization: 17.09 SS G_CDS: -5.32 Total: 11.76 kcal Atomic # 6 Polarization: 10.73 SS G_CDS: -0.54 Total: 10.18 kcal Atomic # 7 Polarization: -58.20 SS G_CDS: -0.43 Total: -58.63 kcal Atomic # 8 Polarization: -23.34 SS G_CDS: 0.21 Total: -23.13 kcal Atomic # 14 Polarization: 18.86 SS G_CDS: -4.71 Total: 14.15 kcal Total LS contribution 5.31 Total: 5.31 kcal Total: -34.87 -5.49 -40.37 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001179253225.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.682 kcal (2) G-P(sol) polarization free energy of solvation -34.872 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.191 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.493 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.365 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.684 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds