Wall clock time and date at job start Fri Apr 10 2020 18:26:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08997 * 110.64798 * 2 1 4 4 C 1.54940 * 110.87595 * 236.73487 * 2 1 3 5 5 N 1.48534 * 103.22395 * 204.16108 * 4 2 1 6 6 C 1.46904 * 110.99926 * 159.72369 * 5 4 2 7 7 C 1.50692 * 109.47082 * 169.99688 * 6 5 4 8 8 O 1.21294 * 120.00433 * 359.97438 * 7 6 5 9 9 N 1.34777 * 119.99903 * 179.97438 * 7 6 5 10 10 C 1.37104 * 119.99907 * 180.02562 * 9 7 6 11 11 H 1.07996 * 119.99884 * 359.97438 * 10 9 7 12 12 C 1.38951 * 119.99733 * 180.02562 * 10 9 7 13 13 N 1.31407 * 119.99829 * 179.97438 * 12 10 9 14 14 Si 1.86803 * 120.00233 * 359.97438 * 12 10 9 15 15 H 1.48497 * 109.46990 * 90.00088 * 14 12 10 16 16 H 1.48499 * 109.47096 * 210.00446 * 14 12 10 17 17 H 1.48504 * 109.46832 * 330.00118 * 14 12 10 18 18 C 1.47901 * 105.82282 * 39.20468 * 5 4 2 19 19 C 1.53991 * 107.05874 * 334.67223 * 18 5 4 20 20 H 1.09001 * 110.30829 * 120.14103 * 19 18 5 21 21 N 1.46503 * 110.30554 * 242.30394 * 19 18 5 22 22 C 1.34768 * 119.99945 * 270.71399 * 21 19 18 23 23 O 1.21681 * 120.00421 * 0.02562 * 22 21 19 24 24 C 1.46725 * 119.99799 * 180.02562 * 22 21 19 25 25 C 1.36346 * 126.64220 * 180.02562 * 24 22 21 26 26 N 1.33697 * 107.45165 * 179.97438 * 25 24 22 27 27 C 1.30621 * 108.99360 * 359.97438 * 26 25 24 28 28 O 1.33669 * 109.15335 * 359.73445 * 27 26 25 29 29 H 1.08999 * 109.47385 * 296.85921 * 1 2 3 30 30 H 1.09001 * 109.47012 * 56.85344 * 1 2 3 31 31 H 1.08994 * 109.47424 * 176.85216 * 1 2 3 32 32 H 1.08993 * 110.66470 * 322.59117 * 4 2 1 33 33 H 1.08994 * 110.66631 * 85.72724 * 4 2 1 34 34 H 1.08997 * 109.46707 * 289.99771 * 6 5 4 35 35 H 1.09005 * 109.46943 * 49.99788 * 6 5 4 36 36 H 0.97001 * 119.99929 * 359.97438 * 9 7 6 37 37 H 0.97004 * 120.00040 * 179.97438 * 13 12 10 38 38 H 1.08996 * 109.91871 * 215.31472 * 18 5 4 39 39 H 1.09007 * 109.91341 * 94.02054 * 18 5 4 40 40 H 0.97004 * 119.99503 * 90.72110 * 21 19 18 41 41 H 1.07997 * 126.27880 * 359.95907 * 25 24 22 42 42 H 1.07995 * 125.41857 * 179.97438 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9143 1.0200 0.0000 4 6 2.0821 -0.7941 -1.2105 5 7 3.4359 -1.2052 -0.7582 6 6 3.9293 -2.3451 -1.5425 7 6 5.3851 -2.5773 -1.2300 8 8 5.9557 -1.8632 -0.4327 9 7 6.0531 -3.5786 -1.8364 10 6 7.3774 -3.7901 -1.5517 11 1 7.8854 -3.1543 -0.8418 12 6 8.0663 -4.8221 -2.1773 13 7 9.3357 -5.0246 -1.9048 14 14 7.1878 -5.9215 -3.4057 15 1 7.3161 -5.3435 -4.7675 16 1 7.7977 -7.2753 -3.3830 17 1 5.7510 -6.0197 -3.0430 18 6 3.2920 -1.5662 0.6688 19 6 2.0770 -0.7906 1.2107 20 1 1.3217 -1.4828 1.5831 21 7 2.4931 0.1289 2.2726 22 6 2.5188 -0.2886 3.5537 23 8 2.1969 -1.4294 3.8284 24 6 2.9351 0.6325 4.6172 25 6 3.0114 0.3554 5.9500 26 7 3.4322 1.4645 6.5667 27 6 3.6164 2.4022 5.6763 28 8 3.3247 1.9196 4.4644 29 1 -0.3634 0.4643 0.9168 30 1 -0.3633 0.5619 -0.8604 31 1 -0.3634 -1.0260 -0.0564 32 1 1.4623 -1.6675 -1.4125 33 1 2.1482 -0.1557 -2.0914 34 1 3.3563 -3.2366 -1.2877 35 1 3.8154 -2.1314 -2.6053 36 1 5.5967 -4.1499 -2.4737 37 1 9.8165 -5.7452 -2.3413 38 1 4.1897 -1.2798 1.2166 39 1 3.1211 -2.6385 0.7652 40 1 2.7500 1.0383 2.0535 41 1 2.7749 -0.5871 6.4213 42 1 3.9545 3.4063 5.8855 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001208242143.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:26:54 Heat of formation + Delta-G solvation = -25.959656 kcal Electronic energy + Delta-G solvation = -26884.514049 eV Core-core repulsion = 22867.046327 eV Total energy + Delta-G solvation = -4017.467721 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 322.147 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -43.72171 -40.31983 -38.95089 -37.81955 -35.36631 -34.60338 -33.89224 -32.80805 -31.64031 -30.92345 -29.01362 -27.54581 -25.55048 -24.55464 -23.51065 -22.96221 -21.59769 -20.81181 -20.54846 -19.29363 -18.68185 -18.19632 -17.15756 -17.11969 -16.92446 -15.95044 -15.58305 -15.29049 -14.88380 -14.64628 -14.61372 -14.44182 -14.08574 -13.75866 -13.46654 -13.37021 -13.14286 -12.76856 -12.52151 -12.35457 -12.13068 -11.91786 -11.83402 -11.54999 -11.37462 -11.22597 -11.14895 -11.02306 -10.92463 -10.58746 -10.46562 -9.96237 -9.55035 -9.53169 -9.22696 -8.63772 -8.16666 -8.08650 -6.29339 -3.80645 0.53113 2.11874 2.14695 2.83714 2.92145 3.03290 3.07397 3.15668 3.75467 3.81865 3.91224 4.11527 4.21780 4.50854 4.54489 4.62858 4.73291 4.83642 5.12718 5.16997 5.21316 5.22427 5.24332 5.28191 5.42947 5.50574 5.58974 5.64028 5.66779 5.75369 5.84663 5.85880 5.90478 5.98748 6.12588 6.40604 6.95247 7.04016 7.07572 7.28048 7.60044 7.78883 8.16156 8.62240 8.97283 9.44335 9.85748 10.83953 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.014097 B = 0.002963 C = 0.002587 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1985.745802 B = 9447.866707 C =10820.822460 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.100 4.100 3 H 0.091 0.909 4 C 0.038 3.962 5 N -0.490 5.490 6 C 0.033 3.967 7 C 0.453 3.547 8 O -0.558 6.558 9 N -0.593 5.593 10 C -0.303 4.303 11 H 0.119 0.881 12 C 0.041 3.959 13 N -0.882 5.882 14 Si 0.880 3.120 15 H -0.271 1.271 16 H -0.277 1.277 17 H -0.270 1.270 18 C 0.033 3.967 19 C 0.137 3.863 20 H 0.100 0.900 21 N -0.702 5.702 22 C 0.609 3.391 23 O -0.514 6.514 24 C -0.106 4.106 25 C 0.052 3.948 26 N -0.495 5.495 27 C 0.200 3.800 28 O -0.191 6.191 29 H 0.057 0.943 30 H 0.062 0.938 31 H 0.058 0.942 32 H 0.048 0.952 33 H 0.087 0.913 34 H 0.053 0.947 35 H 0.092 0.908 36 H 0.370 0.630 37 H 0.273 0.727 38 H 0.098 0.902 39 H 0.051 0.949 40 H 0.407 0.593 41 H 0.198 0.802 42 H 0.257 0.743 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.990 13.217 6.286 24.775 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.119 4.119 3 H 0.109 0.891 4 C -0.091 4.091 5 N -0.214 5.214 6 C -0.099 4.099 7 C 0.239 3.761 8 O -0.439 6.439 9 N -0.233 5.233 10 C -0.432 4.432 11 H 0.137 0.863 12 C -0.162 4.162 13 N -0.523 5.523 14 Si 0.706 3.294 15 H -0.196 1.196 16 H -0.202 1.202 17 H -0.195 1.195 18 C -0.096 4.096 19 C 0.032 3.968 20 H 0.118 0.882 21 N -0.353 5.353 22 C 0.394 3.606 23 O -0.391 6.391 24 C -0.161 4.161 25 C -0.091 4.091 26 N -0.223 5.223 27 C -0.025 4.025 28 O -0.076 6.076 29 H 0.077 0.923 30 H 0.081 0.919 31 H 0.077 0.923 32 H 0.066 0.934 33 H 0.105 0.895 34 H 0.071 0.929 35 H 0.110 0.890 36 H 0.202 0.798 37 H 0.084 0.916 38 H 0.116 0.884 39 H 0.069 0.931 40 H 0.243 0.757 41 H 0.214 0.786 42 H 0.272 0.728 Dipole moment (debyes) X Y Z Total from point charges -19.125 13.282 7.479 24.457 hybrid contribution -0.846 -1.284 -1.698 2.291 sum -19.971 11.998 5.781 24.005 Atomic orbital electron populations 1.21781 0.93819 1.02311 1.02124 1.22341 0.95813 1.00190 0.93567 0.89099 1.23338 0.89496 0.98579 0.97661 1.64487 1.21217 1.33758 1.01947 1.22128 0.95984 0.92590 0.99179 1.19616 0.87686 0.83473 0.85352 1.90555 1.69153 1.47672 1.36558 1.42204 1.11473 1.29339 1.40258 1.19419 0.83652 1.15267 1.24876 0.86340 1.25031 0.95599 0.97498 0.98061 1.69621 1.08122 1.31732 1.42792 0.86671 0.79520 0.81187 0.81999 1.19624 1.20209 1.19545 1.23339 0.98510 0.98043 0.89726 1.22102 0.96671 0.91509 0.86498 0.88186 1.45927 1.67333 1.16405 1.05625 1.16344 0.77814 0.85274 0.81184 1.90916 1.48778 1.17107 1.82263 1.23226 1.11496 0.83736 0.97655 1.23634 0.97562 0.98518 0.89390 1.70468 1.17425 1.00283 1.34141 1.28441 0.96967 1.00894 0.76195 1.84505 1.63294 1.24394 1.35420 0.92345 0.91941 0.92282 0.93362 0.89455 0.92924 0.89027 0.79771 0.91645 0.88407 0.93099 0.75710 0.78555 0.72765 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.01 9.17 37.16 0.34 -0.67 16 2 C -0.10 -0.91 3.36 -88.76 -0.30 -1.21 16 3 H 0.09 0.79 7.75 -51.93 -0.40 0.39 16 4 C 0.04 0.40 5.97 -1.90 -0.01 0.39 16 5 N -0.49 -7.53 4.91 -231.90 -1.14 -8.66 16 6 C 0.03 0.55 5.27 -4.98 -0.03 0.52 16 7 C 0.45 10.39 7.61 -10.99 -0.08 10.30 16 8 O -0.56 -15.10 14.87 5.55 0.08 -15.01 16 9 N -0.59 -14.27 5.09 -10.96 -0.06 -14.32 16 10 C -0.30 -8.68 10.16 -14.93 -0.15 -8.83 16 11 H 0.12 3.88 7.39 -52.49 -0.39 3.49 16 12 C 0.04 1.13 5.50 -17.47 -0.10 1.04 16 13 N -0.88 -26.06 13.96 55.50 0.77 -25.29 16 14 Si 0.88 19.53 27.74 -169.99 -4.71 14.81 16 15 H -0.27 -5.87 7.11 56.52 0.40 -5.47 16 16 H -0.28 -6.17 7.11 56.52 0.40 -5.77 16 17 H -0.27 -5.46 6.52 56.52 0.37 -5.09 16 18 C 0.03 0.51 5.66 -2.76 -0.02 0.49 16 19 C 0.14 1.60 2.92 -66.57 -0.19 1.41 16 20 H 0.10 1.20 7.27 -51.93 -0.38 0.82 16 21 N -0.70 -7.87 5.00 -53.78 -0.27 -8.14 16 22 C 0.61 7.86 7.79 -12.84 -0.10 7.76 16 23 O -0.51 -8.11 16.54 5.21 0.09 -8.02 16 24 C -0.11 -1.20 7.18 -36.84 -0.26 -1.47 16 25 C 0.05 0.57 11.66 -17.42 -0.20 0.37 16 26 N -0.49 -5.16 11.26 -14.67 -0.17 -5.32 16 27 C 0.20 1.49 13.21 52.25 0.69 2.18 16 28 O -0.19 -1.78 10.57 4.43 0.05 -1.74 16 29 H 0.06 0.41 8.14 -51.93 -0.42 -0.02 16 30 H 0.06 0.38 8.14 -51.93 -0.42 -0.05 16 31 H 0.06 0.42 8.11 -51.93 -0.42 0.00 16 32 H 0.05 0.47 7.90 -51.93 -0.41 0.06 16 33 H 0.09 0.85 8.14 -51.93 -0.42 0.43 16 34 H 0.05 0.78 7.73 -51.93 -0.40 0.38 16 35 H 0.09 1.30 8.08 -51.93 -0.42 0.88 16 36 H 0.37 7.79 5.76 -40.82 -0.24 7.55 16 37 H 0.27 7.44 8.31 -40.82 -0.34 7.10 16 38 H 0.10 1.87 7.31 -51.93 -0.38 1.49 16 39 H 0.05 0.83 7.52 -51.92 -0.39 0.44 16 40 H 0.41 3.83 8.17 -40.82 -0.33 3.49 16 41 H 0.20 1.91 8.06 -52.49 -0.42 1.48 16 42 H 0.26 0.49 8.06 -52.49 -0.42 0.07 16 LS Contribution 357.99 15.07 5.39 5.39 Total: -1.00 -36.54 357.99 -5.81 -42.36 By element: Atomic # 1 Polarization: 17.12 SS G_CDS: -5.44 Total: 11.68 kcal Atomic # 6 Polarization: 12.69 SS G_CDS: -0.41 Total: 12.27 kcal Atomic # 7 Polarization: -60.89 SS G_CDS: -0.85 Total: -61.74 kcal Atomic # 8 Polarization: -24.99 SS G_CDS: 0.22 Total: -24.77 kcal Atomic # 14 Polarization: 19.53 SS G_CDS: -4.71 Total: 14.81 kcal Total LS contribution 5.39 Total: 5.39 kcal Total: -36.54 -5.81 -42.36 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001208242143.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.398 kcal (2) G-P(sol) polarization free energy of solvation -36.543 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.146 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.814 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.357 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.960 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds