Wall clock time and date at job start Fri Apr 10 2020 18:26:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08997 * 110.64798 * 2 1 4 4 C 1.54940 * 110.87595 * 236.73487 * 2 1 3 5 5 N 1.48534 * 103.22395 * 204.16108 * 4 2 1 6 6 C 1.46904 * 110.99926 * 159.72369 * 5 4 2 7 7 C 1.50692 * 109.47082 * 169.99688 * 6 5 4 8 8 O 1.21294 * 120.00433 * 359.97438 * 7 6 5 9 9 N 1.34777 * 119.99903 * 179.97438 * 7 6 5 10 10 C 1.37104 * 119.99907 * 180.02562 * 9 7 6 11 11 H 1.07996 * 119.99884 * 359.97438 * 10 9 7 12 12 C 1.38951 * 119.99733 * 180.02562 * 10 9 7 13 13 N 1.31407 * 119.99829 * 179.97438 * 12 10 9 14 14 Si 1.86803 * 120.00233 * 359.97438 * 12 10 9 15 15 H 1.48497 * 109.46990 * 90.00088 * 14 12 10 16 16 H 1.48499 * 109.47096 * 210.00446 * 14 12 10 17 17 H 1.48504 * 109.46832 * 330.00118 * 14 12 10 18 18 C 1.47901 * 105.82282 * 39.20468 * 5 4 2 19 19 C 1.53991 * 107.05874 * 334.67223 * 18 5 4 20 20 H 1.09001 * 110.30829 * 120.14103 * 19 18 5 21 21 N 1.46503 * 110.30554 * 242.30394 * 19 18 5 22 22 C 1.34768 * 119.99945 * 270.71399 * 21 19 18 23 23 O 1.21681 * 120.00421 * 0.02562 * 22 21 19 24 24 C 1.46725 * 119.99799 * 180.02562 * 22 21 19 25 25 C 1.36346 * 126.64220 * 180.02562 * 24 22 21 26 26 N 1.33697 * 107.45165 * 179.97438 * 25 24 22 27 27 C 1.30621 * 108.99360 * 359.97438 * 26 25 24 28 28 O 1.33669 * 109.15335 * 359.73445 * 27 26 25 29 29 H 1.08999 * 109.47385 * 296.85921 * 1 2 3 30 30 H 1.09001 * 109.47012 * 56.85344 * 1 2 3 31 31 H 1.08994 * 109.47424 * 176.85216 * 1 2 3 32 32 H 1.08993 * 110.66470 * 322.59117 * 4 2 1 33 33 H 1.08994 * 110.66631 * 85.72724 * 4 2 1 34 34 H 1.08997 * 109.46707 * 289.99771 * 6 5 4 35 35 H 1.09005 * 109.46943 * 49.99788 * 6 5 4 36 36 H 0.97001 * 119.99929 * 359.97438 * 9 7 6 37 37 H 0.97004 * 120.00040 * 179.97438 * 13 12 10 38 38 H 1.08996 * 109.91871 * 215.31472 * 18 5 4 39 39 H 1.09007 * 109.91341 * 94.02054 * 18 5 4 40 40 H 0.97004 * 119.99503 * 90.72110 * 21 19 18 41 41 H 1.07997 * 126.27880 * 359.95907 * 25 24 22 42 42 H 1.07995 * 125.41857 * 179.97438 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9143 1.0200 0.0000 4 6 2.0821 -0.7941 -1.2105 5 7 3.4359 -1.2052 -0.7582 6 6 3.9293 -2.3451 -1.5425 7 6 5.3851 -2.5773 -1.2300 8 8 5.9557 -1.8632 -0.4327 9 7 6.0531 -3.5786 -1.8364 10 6 7.3774 -3.7901 -1.5517 11 1 7.8854 -3.1543 -0.8418 12 6 8.0663 -4.8221 -2.1773 13 7 9.3357 -5.0246 -1.9048 14 14 7.1878 -5.9215 -3.4057 15 1 7.3161 -5.3435 -4.7675 16 1 7.7977 -7.2753 -3.3830 17 1 5.7510 -6.0197 -3.0430 18 6 3.2920 -1.5662 0.6688 19 6 2.0770 -0.7906 1.2107 20 1 1.3217 -1.4828 1.5831 21 7 2.4931 0.1289 2.2726 22 6 2.5188 -0.2886 3.5537 23 8 2.1969 -1.4294 3.8284 24 6 2.9351 0.6325 4.6172 25 6 3.0114 0.3554 5.9500 26 7 3.4322 1.4645 6.5667 27 6 3.6164 2.4022 5.6763 28 8 3.3247 1.9196 4.4644 29 1 -0.3634 0.4643 0.9168 30 1 -0.3633 0.5619 -0.8604 31 1 -0.3634 -1.0260 -0.0564 32 1 1.4623 -1.6675 -1.4125 33 1 2.1482 -0.1557 -2.0914 34 1 3.3563 -3.2366 -1.2877 35 1 3.8154 -2.1314 -2.6053 36 1 5.5967 -4.1499 -2.4737 37 1 9.8165 -5.7452 -2.3413 38 1 4.1897 -1.2798 1.2166 39 1 3.1211 -2.6385 0.7652 40 1 2.7500 1.0383 2.0535 41 1 2.7749 -0.5871 6.4213 42 1 3.9545 3.4063 5.8855 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001208242143.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:26:53 Heat of formation + Delta-G solvation = -59.750070 kcal Electronic energy + Delta-G solvation = -26885.979311 eV Core-core repulsion = 22867.046327 eV Total energy + Delta-G solvation = -4018.932983 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 322.147 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -44.47953 -41.36775 -40.37888 -39.26843 -36.25263 -36.01703 -35.48806 -33.84537 -33.65820 -31.75110 -30.15728 -28.74826 -26.80603 -25.85913 -24.61200 -23.75181 -22.63971 -21.83484 -21.46491 -21.18499 -20.13297 -19.50039 -18.03790 -17.93166 -17.84100 -17.56921 -16.89410 -16.68057 -16.34720 -15.74630 -15.69839 -15.38266 -15.30988 -15.05720 -14.71176 -14.54761 -14.42589 -14.13204 -14.01373 -13.45110 -13.34821 -13.09807 -12.98021 -12.61601 -12.51919 -12.42617 -12.37441 -12.05997 -12.00122 -11.89704 -11.70739 -11.51040 -11.44637 -10.49388 -10.43026 -10.25426 -10.10832 -9.35559 -8.42488 -6.03484 -0.28594 1.28730 1.32778 1.34639 1.38627 1.43410 1.89948 1.95717 2.05591 2.22033 2.63389 3.11733 3.18717 3.24341 3.48134 3.57567 3.71123 3.82211 3.96047 4.11430 4.21456 4.29173 4.36855 4.39385 4.45450 4.55115 4.56060 4.63731 4.80011 4.83385 4.90464 5.05102 5.15606 5.17873 5.31411 5.41709 5.51496 5.80848 5.90046 6.00990 6.17509 6.48713 6.58978 6.83993 6.87543 7.38936 7.97135 8.75506 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.014097 B = 0.002963 C = 0.002587 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1985.745802 B = 9447.866707 C =10820.822460 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.088 4.088 3 H 0.098 0.902 4 C 0.039 3.961 5 N -0.513 5.513 6 C 0.045 3.955 7 C 0.449 3.551 8 O -0.609 6.609 9 N -0.593 5.593 10 C -0.328 4.328 11 H 0.052 0.948 12 C -0.016 4.016 13 N -0.936 5.936 14 Si 0.967 3.033 15 H -0.254 1.254 16 H -0.276 1.276 17 H -0.232 1.232 18 C 0.036 3.964 19 C 0.143 3.857 20 H 0.099 0.901 21 N -0.694 5.694 22 C 0.607 3.393 23 O -0.552 6.552 24 C -0.129 4.129 25 C 0.050 3.950 26 N -0.527 5.527 27 C 0.228 3.772 28 O -0.191 6.191 29 H 0.059 0.941 30 H 0.081 0.919 31 H 0.061 0.939 32 H 0.068 0.932 33 H 0.106 0.894 34 H 0.079 0.921 35 H 0.129 0.871 36 H 0.390 0.610 37 H 0.279 0.721 38 H 0.049 0.951 39 H 0.037 0.963 40 H 0.416 0.584 41 H 0.200 0.800 42 H 0.310 0.690 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.366 13.954 4.109 27.524 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.107 4.107 3 H 0.116 0.884 4 C -0.088 4.088 5 N -0.238 5.238 6 C -0.087 4.087 7 C 0.237 3.763 8 O -0.493 6.493 9 N -0.236 5.236 10 C -0.458 4.458 11 H 0.070 0.930 12 C -0.215 4.215 13 N -0.577 5.577 14 Si 0.786 3.214 15 H -0.178 1.178 16 H -0.201 1.201 17 H -0.155 1.155 18 C -0.094 4.094 19 C 0.038 3.962 20 H 0.117 0.883 21 N -0.344 5.344 22 C 0.393 3.607 23 O -0.432 6.432 24 C -0.184 4.184 25 C -0.093 4.093 26 N -0.255 5.255 27 C 0.004 3.996 28 O -0.078 6.078 29 H 0.078 0.922 30 H 0.100 0.900 31 H 0.080 0.920 32 H 0.086 0.914 33 H 0.124 0.876 34 H 0.097 0.903 35 H 0.146 0.854 36 H 0.225 0.775 37 H 0.089 0.911 38 H 0.068 0.932 39 H 0.055 0.945 40 H 0.254 0.746 41 H 0.217 0.783 42 H 0.324 0.676 Dipole moment (debyes) X Y Z Total from point charges -22.536 14.058 5.291 27.083 hybrid contribution 0.328 -1.331 -0.872 1.625 sum -22.208 12.726 4.420 25.975 Atomic orbital electron populations 1.21745 0.91620 1.02903 1.03104 1.22341 0.97364 0.99790 0.91208 0.88370 1.23501 0.86964 0.99709 0.98608 1.64378 1.24638 1.33273 1.01466 1.22065 0.90833 0.94459 1.01334 1.20984 0.90277 0.81674 0.83376 1.90537 1.71120 1.49193 1.38427 1.42033 1.09891 1.30417 1.41209 1.18982 0.86043 1.15647 1.25079 0.92998 1.26140 0.96317 0.98801 1.00214 1.69810 1.10523 1.32850 1.44517 0.85344 0.79831 0.77697 0.78507 1.17825 1.20079 1.15527 1.23167 0.98097 0.97780 0.90310 1.22054 0.94813 0.91858 0.87461 0.88288 1.45871 1.66656 1.16720 1.05149 1.16553 0.77210 0.85070 0.81859 1.90879 1.50697 1.18710 1.82954 1.22876 1.13671 0.84669 0.97201 1.23806 0.96880 0.99074 0.89516 1.70505 1.19133 1.00741 1.35102 1.29695 0.93260 1.01808 0.74849 1.84510 1.63476 1.23444 1.36324 0.92183 0.90041 0.92022 0.91359 0.87585 0.90292 0.85355 0.77490 0.91145 0.93223 0.94492 0.74639 0.78345 0.67588 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.45 9.17 71.98 0.66 -0.79 16 2 C -0.09 -1.38 3.36 -9.59 -0.03 -1.41 16 3 H 0.10 1.43 7.75 -2.39 -0.02 1.41 16 4 C 0.04 0.70 5.97 86.65 0.52 1.22 16 5 N -0.51 -15.06 4.91 -887.58 -4.36 -19.42 16 6 C 0.04 1.37 5.27 85.55 0.45 1.83 16 7 C 0.45 20.87 7.61 87.65 0.67 21.53 16 8 O -0.61 -34.85 14.87 -3.07 -0.05 -34.90 16 9 N -0.59 -28.66 5.09 -306.99 -1.56 -30.22 16 10 C -0.33 -19.71 10.16 84.04 0.85 -18.85 16 11 H 0.05 3.72 7.39 -2.91 -0.02 3.70 16 12 C -0.02 -0.93 5.50 84.93 0.47 -0.46 16 13 N -0.94 -57.52 13.96 21.66 0.30 -57.21 16 14 Si 0.97 39.33 27.74 68.60 1.90 41.24 16 15 H -0.25 -9.69 7.11 99.48 0.71 -8.98 16 16 H -0.28 -11.16 7.11 99.48 0.71 -10.45 16 17 H -0.23 -7.95 6.52 99.48 0.65 -7.30 16 18 C 0.04 1.15 5.66 86.45 0.49 1.64 16 19 C 0.14 3.28 2.92 45.87 0.13 3.42 16 20 H 0.10 2.32 7.27 -2.39 -0.02 2.31 16 21 N -0.69 -15.76 5.00 -442.30 -2.21 -17.97 16 22 C 0.61 16.36 7.79 86.46 0.67 17.03 16 23 O -0.55 -18.44 16.54 -4.29 -0.07 -18.51 16 24 C -0.13 -2.99 7.18 24.05 0.17 -2.82 16 25 C 0.05 1.13 11.66 83.97 0.98 2.11 16 26 N -0.53 -10.57 11.26 -315.08 -3.55 -14.12 16 27 C 0.23 2.92 13.21 130.42 1.72 4.64 16 28 O -0.19 -3.39 10.57 -7.06 -0.07 -3.47 16 29 H 0.06 0.65 8.14 -2.39 -0.02 0.63 16 30 H 0.08 0.61 8.14 -2.39 -0.02 0.59 16 31 H 0.06 0.66 8.11 -2.39 -0.02 0.64 16 32 H 0.07 1.00 7.90 -2.39 -0.02 0.98 16 33 H 0.11 1.56 8.14 -2.39 -0.02 1.55 16 34 H 0.08 2.08 7.73 -2.39 -0.02 2.06 16 35 H 0.13 3.07 8.08 -2.38 -0.02 3.05 16 36 H 0.39 15.46 5.76 -92.71 -0.53 14.93 16 37 H 0.28 15.63 8.31 -92.71 -0.77 14.86 16 38 H 0.05 2.05 7.31 -2.39 -0.02 2.03 16 39 H 0.04 1.24 7.52 -2.38 -0.02 1.22 16 40 H 0.42 7.72 8.17 -92.71 -0.76 6.96 16 41 H 0.20 4.14 8.06 -2.91 -0.02 4.12 16 42 H 0.31 -0.05 8.06 -2.91 -0.02 -0.08 16 Total: -1.00 -89.10 357.99 -2.18 -91.28 By element: Atomic # 1 Polarization: 34.50 SS G_CDS: -0.27 Total: 34.23 kcal Atomic # 6 Polarization: 21.32 SS G_CDS: 7.76 Total: 29.07 kcal Atomic # 7 Polarization: -127.56 SS G_CDS: -11.38 Total: -138.94 kcal Atomic # 8 Polarization: -56.69 SS G_CDS: -0.19 Total: -56.88 kcal Atomic # 14 Polarization: 39.33 SS G_CDS: 1.90 Total: 41.24 kcal Total: -89.10 -2.18 -91.28 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001208242143.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.529 kcal (2) G-P(sol) polarization free energy of solvation -89.095 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.566 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.184 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -91.279 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.750 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds