Wall clock time and date at job start Fri Apr 10 2020 18:27:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 C 1.36883 * 126.39683 * 2 1 4 4 C 1.34669 * 106.81610 * 180.02562 * 3 2 1 5 5 N 1.34121 * 108.01936 * 359.97438 * 4 3 2 6 6 C 1.30499 * 109.25895 * 359.97438 * 5 4 3 7 7 C 1.50702 * 125.65066 * 179.97438 * 6 5 4 8 8 N 1.46493 * 109.47467 * 270.00821 * 7 6 5 9 9 C 1.34776 * 120.00235 * 179.97438 * 8 7 6 10 10 O 1.21350 * 119.99794 * 0.02562 * 9 8 7 11 11 C 1.49449 * 120.00336 * 179.97438 * 9 8 7 12 12 O 1.21350 * 119.99869 * 0.02562 * 11 9 8 13 13 N 1.34776 * 120.00336 * 179.97438 * 11 9 8 14 14 C 1.47024 * 125.64798 * 359.69481 * 13 11 9 15 15 C 1.54330 * 107.26650 * 178.84835 * 14 13 11 16 16 C 1.55146 * 103.02271 * 338.14119 * 15 14 13 17 17 O 1.42911 * 111.00530 * 277.23358 * 16 15 14 18 18 C 1.50693 * 111.04130 * 153.39789 * 16 15 14 19 19 H 1.08002 * 120.00070 * 272.60781 * 18 16 15 20 20 C 1.37879 * 120.00247 * 92.60615 * 18 16 15 21 21 N 1.31517 * 119.99830 * 173.52445 * 20 18 16 22 22 Si 1.86791 * 120.00105 * 353.52257 * 20 18 16 23 23 H 1.48499 * 109.47375 * 87.31937 * 22 20 18 24 24 H 1.48498 * 109.47244 * 207.32192 * 22 20 18 25 25 H 1.48505 * 109.47111 * 327.32226 * 22 20 18 26 26 C 1.47423 * 125.64935 * 180.02562 * 13 11 9 27 27 H 1.08998 * 109.47102 * 90.02481 * 1 2 3 28 28 H 1.08995 * 109.47194 * 210.02343 * 1 2 3 29 29 H 1.09004 * 109.46648 * 330.02314 * 1 2 3 30 30 H 1.08003 * 126.58945 * 359.97438 * 3 2 1 31 31 H 1.08002 * 125.98884 * 179.73797 * 4 3 2 32 32 H 1.09001 * 109.46891 * 30.00759 * 7 6 5 33 33 H 1.08994 * 109.47217 * 150.00479 * 7 6 5 34 34 H 0.97002 * 120.00653 * 359.97438 * 8 7 6 35 35 H 1.09000 * 109.88004 * 298.39450 * 14 13 11 36 36 H 1.09004 * 109.88149 * 59.55877 * 14 13 11 37 37 H 1.09005 * 110.84953 * 219.66586 * 15 14 13 38 38 H 1.09005 * 110.51511 * 96.45209 * 15 14 13 39 39 H 0.96701 * 113.99833 * 168.39725 * 17 16 15 40 40 H 0.97001 * 120.00178 * 180.02562 * 21 20 18 41 41 H 1.09000 * 110.36543 * 322.92583 * 26 13 11 42 42 H 1.08997 * 110.37150 * 85.14559 * 26 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2773 1.1018 0.0000 4 6 3.5461 0.6505 -0.0006 5 7 3.5095 -0.6902 -0.0003 6 6 2.2663 -1.0869 0.0009 7 6 1.8018 -2.5206 0.0010 8 7 1.6499 -2.9849 -1.3801 9 6 1.2417 -4.2455 -1.6262 10 8 0.9996 -4.9959 -0.7038 11 6 1.0863 -4.7190 -3.0352 12 8 1.3280 -3.9685 -3.9576 13 7 0.6786 -5.9798 -3.2813 14 6 0.3603 -6.9916 -2.2632 15 6 -0.0868 -8.2668 -3.0088 16 6 -0.5295 -7.7251 -4.3936 17 8 -1.8678 -7.2262 -4.3445 18 6 -0.3890 -8.7823 -5.4582 19 1 0.5497 -8.9034 -5.9784 20 6 -1.4588 -9.5950 -5.7682 21 7 -1.3785 -10.4298 -6.7813 22 14 -3.0221 -9.5103 -4.7493 23 1 -3.9121 -8.4543 -5.2951 24 1 -3.7188 -10.8207 -4.8019 25 1 -2.6782 -9.1887 -3.3409 26 6 0.4845 -6.5749 -4.6161 27 1 -0.3633 -0.0004 -1.0276 28 1 -0.3633 -0.8897 0.5142 29 1 -0.3633 0.8902 0.5135 30 1 1.9612 2.1346 -0.0004 31 1 4.4369 1.2611 -0.0047 32 1 2.5370 -3.1406 0.5140 33 1 0.8437 -2.5920 0.5158 34 1 1.8431 -2.3850 -2.1175 35 1 1.2442 -7.2025 -1.6612 36 1 -0.4485 -6.6344 -1.6257 37 1 -0.9223 -8.7433 -2.4959 38 1 0.7479 -8.9599 -3.1147 39 1 -2.1278 -6.7203 -5.1265 40 1 -2.1313 -11.0013 -6.9997 41 1 0.0749 -5.8361 -5.3049 42 1 1.4274 -6.9666 -4.9976 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001261466259.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:27:13 Heat of formation + Delta-G solvation = -34.980357 kcal Electronic energy + Delta-G solvation = -27127.290938 eV Core-core repulsion = 23109.432049 eV Total energy + Delta-G solvation = -4017.858888 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 322.147 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -42.54944 -40.57464 -38.81900 -37.57439 -35.53447 -34.63166 -34.43001 -32.40713 -30.79568 -30.49183 -28.51255 -27.74552 -26.97593 -25.70257 -23.52584 -21.96143 -21.81757 -20.62471 -19.97761 -19.69414 -17.95893 -17.56192 -17.13579 -16.93064 -16.22222 -16.12526 -15.42297 -15.27746 -15.23298 -14.78964 -14.56567 -14.41207 -14.00650 -13.66010 -13.44269 -13.36937 -13.30374 -12.95537 -12.81825 -12.69554 -12.58811 -12.04485 -11.78756 -11.60492 -11.32367 -11.00965 -10.51730 -10.39294 -10.38130 -10.26867 -10.05308 -9.51570 -9.48082 -9.27034 -8.86946 -8.72694 -8.56528 -8.26206 -6.22293 -4.34884 1.42620 1.53190 2.24636 2.38628 2.84799 3.32855 3.43950 3.51066 3.66078 3.69823 3.84783 4.22320 4.32750 4.45009 4.47643 4.59859 4.79677 4.93191 4.99105 5.04859 5.11185 5.18740 5.35705 5.36866 5.68852 5.73404 5.79833 5.88888 5.96880 6.12686 6.32282 6.32718 6.42982 6.61945 6.64498 6.74602 6.97049 7.01399 7.39821 7.57417 7.65817 7.73342 8.08224 8.13628 8.56783 8.77506 9.38682 10.86354 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.031429 B = 0.002583 C = 0.002550 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 890.672723 B =10836.165795 C =10978.051826 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.066 3.934 2 N -0.450 5.450 3 C -0.047 4.047 4 C -0.027 4.027 5 N -0.469 5.469 6 C 0.180 3.820 7 C 0.210 3.790 8 N -0.703 5.703 9 C 0.514 3.486 10 O -0.510 6.510 11 C 0.513 3.487 12 O -0.537 6.537 13 N -0.574 5.574 14 C 0.107 3.893 15 C -0.125 4.125 16 C 0.220 3.780 17 O -0.558 6.558 18 C -0.553 4.553 19 H 0.082 0.918 20 C 0.075 3.925 21 N -0.886 5.886 22 Si 0.951 3.049 23 H -0.293 1.293 24 H -0.326 1.326 25 H -0.268 1.268 26 C 0.086 3.914 27 H 0.082 0.918 28 H 0.090 0.910 29 H 0.089 0.911 30 H 0.178 0.822 31 H 0.174 0.826 32 H 0.105 0.895 33 H 0.087 0.913 34 H 0.414 0.586 35 H 0.069 0.931 36 H 0.072 0.928 37 H 0.082 0.918 38 H 0.086 0.914 39 H 0.371 0.629 40 H 0.267 0.733 41 H 0.075 0.925 42 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.046 21.130 14.617 25.873 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 N -0.133 5.133 3 C -0.181 4.181 4 C -0.176 4.176 5 N -0.188 5.188 6 C -0.082 4.082 7 C 0.085 3.915 8 N -0.359 5.359 9 C 0.295 3.705 10 O -0.385 6.385 11 C 0.295 3.705 12 O -0.415 6.415 13 N -0.306 5.306 14 C -0.016 4.016 15 C -0.164 4.164 16 C 0.179 3.821 17 O -0.366 6.366 18 C -0.590 4.590 19 H 0.100 0.900 20 C -0.130 4.130 21 N -0.521 5.521 22 Si 0.786 3.214 23 H -0.221 1.221 24 H -0.257 1.257 25 H -0.194 1.194 26 C -0.035 4.035 27 H 0.101 0.899 28 H 0.109 0.891 29 H 0.108 0.892 30 H 0.195 0.805 31 H 0.191 0.809 32 H 0.123 0.877 33 H 0.105 0.895 34 H 0.251 0.749 35 H 0.087 0.913 36 H 0.090 0.910 37 H 0.101 0.899 38 H 0.105 0.895 39 H 0.219 0.781 40 H 0.077 0.923 41 H 0.094 0.906 42 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges 3.478 20.073 15.291 25.473 hybrid contribution -1.367 1.303 -0.437 1.939 sum 2.112 21.377 14.854 26.116 Atomic orbital electron populations 1.22169 0.76158 1.05019 1.04312 1.45348 1.07878 1.06574 1.53520 1.22829 0.91332 0.92626 1.11312 1.22391 0.96646 0.90945 1.07664 1.70273 1.18190 1.12321 1.17991 1.22981 0.86126 0.90433 1.08619 1.19472 1.02264 0.85864 0.83876 1.45719 1.67991 1.13469 1.08760 1.20273 0.77919 0.82075 0.90212 1.90767 1.47896 1.54024 1.45774 1.19499 0.80045 0.82168 0.88743 1.90741 1.51083 1.54189 1.45518 1.48458 1.61429 1.10046 1.10699 1.22299 1.00524 0.88471 0.90261 1.23076 1.01680 0.95320 0.96292 1.20271 0.78069 0.89806 0.93904 1.86141 1.31606 1.72367 1.46471 1.21074 1.00960 1.16727 1.20242 0.89965 1.25110 0.99755 0.93866 0.94286 1.69965 1.32389 1.23273 1.26475 0.85652 0.80772 0.73588 0.81392 1.22083 1.25738 1.19408 1.23353 1.01595 0.96393 0.82155 0.89909 0.89136 0.89193 0.80476 0.80904 0.87717 0.89496 0.74935 0.91258 0.90968 0.89910 0.89506 0.78110 0.92340 0.90623 0.90115 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.29 10.97 59.85 0.66 0.95 16 2 N -0.45 -3.47 3.15 -121.28 -0.38 -3.85 16 3 C -0.05 -0.34 11.58 -16.56 -0.19 -0.53 16 4 C -0.03 -0.25 11.87 -17.82 -0.21 -0.46 16 5 N -0.47 -5.55 11.25 -10.82 -0.12 -5.67 16 6 C 0.18 1.81 7.27 -155.42 -1.13 0.68 16 7 C 0.21 2.06 5.98 -5.20 -0.03 2.03 16 8 N -0.70 -8.30 5.54 -61.92 -0.34 -8.64 16 9 C 0.51 7.59 7.86 -11.59 -0.09 7.49 16 10 O -0.51 -8.17 14.12 5.50 0.08 -8.09 16 11 C 0.51 8.88 7.91 -11.59 -0.09 8.78 16 12 O -0.54 -10.13 16.73 5.50 0.09 -10.04 16 13 N -0.57 -10.42 3.33 -171.01 -0.57 -10.99 16 14 C 0.11 1.86 5.49 -3.06 -0.02 1.84 16 15 C -0.13 -2.45 5.90 -24.90 -0.15 -2.59 16 16 C 0.22 4.72 0.70 -89.62 -0.06 4.66 16 17 O -0.56 -11.81 8.52 -35.23 -0.30 -12.11 16 18 C -0.55 -14.22 8.89 -34.44 -0.31 -14.53 16 19 H 0.08 2.29 8.00 -52.49 -0.42 1.88 16 20 C 0.08 2.04 5.46 -17.82 -0.10 1.95 16 21 N -0.89 -25.80 13.96 55.43 0.77 -25.03 16 22 Si 0.95 22.92 24.93 -169.99 -4.24 18.68 16 23 H -0.29 -6.96 7.11 56.52 0.40 -6.55 16 24 H -0.33 -8.11 7.11 56.52 0.40 -7.70 16 25 H -0.27 -6.33 5.42 56.52 0.31 -6.03 16 26 C 0.09 1.69 6.07 -2.52 -0.02 1.67 16 27 H 0.08 0.35 8.14 -51.93 -0.42 -0.07 16 28 H 0.09 0.35 7.05 -51.93 -0.37 -0.01 16 29 H 0.09 0.20 8.14 -51.93 -0.42 -0.22 16 30 H 0.18 0.65 8.06 -52.48 -0.42 0.23 16 31 H 0.17 1.15 8.06 -52.49 -0.42 0.73 16 32 H 0.10 1.09 8.14 -51.93 -0.42 0.66 16 33 H 0.09 0.72 7.07 -51.93 -0.37 0.35 16 34 H 0.41 4.89 7.94 -40.82 -0.32 4.56 16 35 H 0.07 1.13 7.71 -51.93 -0.40 0.73 16 36 H 0.07 1.26 7.57 -51.93 -0.39 0.87 16 37 H 0.08 1.66 6.65 -51.93 -0.35 1.31 16 38 H 0.09 1.65 8.03 -51.93 -0.42 1.23 16 39 H 0.37 6.94 8.99 45.56 0.41 7.35 16 40 H 0.27 7.36 8.31 -40.82 -0.34 7.02 16 41 H 0.08 1.46 8.02 -51.93 -0.42 1.04 16 42 H 0.08 1.59 7.99 -51.93 -0.41 1.18 16 LS Contribution 350.96 15.07 5.29 5.29 Total: -1.00 -33.70 350.96 -6.25 -39.96 By element: Atomic # 1 Polarization: 13.34 SS G_CDS: -4.80 Total: 8.54 kcal Atomic # 6 Polarization: 13.68 SS G_CDS: -1.74 Total: 11.95 kcal Atomic # 7 Polarization: -53.53 SS G_CDS: -0.64 Total: -54.18 kcal Atomic # 8 Polarization: -30.11 SS G_CDS: -0.13 Total: -30.24 kcal Atomic # 14 Polarization: 22.92 SS G_CDS: -4.24 Total: 18.68 kcal Total LS contribution 5.29 Total: 5.29 kcal Total: -33.70 -6.25 -39.96 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001261466259.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.977 kcal (2) G-P(sol) polarization free energy of solvation -33.702 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.725 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.255 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.957 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.980 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds