Wall clock time and date at job start Fri Apr 10 2020 18:27:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 C 1.36883 * 126.39683 * 2 1 4 4 C 1.34669 * 106.81610 * 180.02562 * 3 2 1 5 5 N 1.34121 * 108.01936 * 359.97438 * 4 3 2 6 6 C 1.30499 * 109.25895 * 359.97438 * 5 4 3 7 7 C 1.50702 * 125.65066 * 179.97438 * 6 5 4 8 8 N 1.46493 * 109.47467 * 270.00821 * 7 6 5 9 9 C 1.34776 * 120.00235 * 179.97438 * 8 7 6 10 10 O 1.21350 * 119.99794 * 0.02562 * 9 8 7 11 11 C 1.49449 * 120.00336 * 179.97438 * 9 8 7 12 12 O 1.21350 * 119.99869 * 0.02562 * 11 9 8 13 13 N 1.34776 * 120.00336 * 179.97438 * 11 9 8 14 14 C 1.47024 * 125.64798 * 359.69481 * 13 11 9 15 15 C 1.54330 * 107.26650 * 178.84835 * 14 13 11 16 16 C 1.55146 * 103.02271 * 338.14119 * 15 14 13 17 17 O 1.42911 * 111.00530 * 277.23358 * 16 15 14 18 18 C 1.50693 * 111.04130 * 153.39789 * 16 15 14 19 19 H 1.08002 * 120.00070 * 272.60781 * 18 16 15 20 20 C 1.37879 * 120.00247 * 92.60615 * 18 16 15 21 21 N 1.31517 * 119.99830 * 173.52445 * 20 18 16 22 22 Si 1.86791 * 120.00105 * 353.52257 * 20 18 16 23 23 H 1.48499 * 109.47375 * 87.31937 * 22 20 18 24 24 H 1.48498 * 109.47244 * 207.32192 * 22 20 18 25 25 H 1.48505 * 109.47111 * 327.32226 * 22 20 18 26 26 C 1.47423 * 125.64935 * 180.02562 * 13 11 9 27 27 H 1.08998 * 109.47102 * 90.02481 * 1 2 3 28 28 H 1.08995 * 109.47194 * 210.02343 * 1 2 3 29 29 H 1.09004 * 109.46648 * 330.02314 * 1 2 3 30 30 H 1.08003 * 126.58945 * 359.97438 * 3 2 1 31 31 H 1.08002 * 125.98884 * 179.73797 * 4 3 2 32 32 H 1.09001 * 109.46891 * 30.00759 * 7 6 5 33 33 H 1.08994 * 109.47217 * 150.00479 * 7 6 5 34 34 H 0.97002 * 120.00653 * 359.97438 * 8 7 6 35 35 H 1.09000 * 109.88004 * 298.39450 * 14 13 11 36 36 H 1.09004 * 109.88149 * 59.55877 * 14 13 11 37 37 H 1.09005 * 110.84953 * 219.66586 * 15 14 13 38 38 H 1.09005 * 110.51511 * 96.45209 * 15 14 13 39 39 H 0.96701 * 113.99833 * 168.39725 * 17 16 15 40 40 H 0.97001 * 120.00178 * 180.02562 * 21 20 18 41 41 H 1.09000 * 110.36543 * 322.92583 * 26 13 11 42 42 H 1.08997 * 110.37150 * 85.14559 * 26 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2773 1.1018 0.0000 4 6 3.5461 0.6505 -0.0006 5 7 3.5095 -0.6902 -0.0003 6 6 2.2663 -1.0869 0.0009 7 6 1.8018 -2.5206 0.0010 8 7 1.6499 -2.9849 -1.3801 9 6 1.2417 -4.2455 -1.6262 10 8 0.9996 -4.9959 -0.7038 11 6 1.0863 -4.7190 -3.0352 12 8 1.3280 -3.9685 -3.9576 13 7 0.6786 -5.9798 -3.2813 14 6 0.3603 -6.9916 -2.2632 15 6 -0.0868 -8.2668 -3.0088 16 6 -0.5295 -7.7251 -4.3936 17 8 -1.8678 -7.2262 -4.3445 18 6 -0.3890 -8.7823 -5.4582 19 1 0.5497 -8.9034 -5.9784 20 6 -1.4588 -9.5950 -5.7682 21 7 -1.3785 -10.4298 -6.7813 22 14 -3.0221 -9.5103 -4.7493 23 1 -3.9121 -8.4543 -5.2951 24 1 -3.7188 -10.8207 -4.8019 25 1 -2.6782 -9.1887 -3.3409 26 6 0.4845 -6.5749 -4.6161 27 1 -0.3633 -0.0004 -1.0276 28 1 -0.3633 -0.8897 0.5142 29 1 -0.3633 0.8902 0.5135 30 1 1.9612 2.1346 -0.0004 31 1 4.4369 1.2611 -0.0047 32 1 2.5370 -3.1406 0.5140 33 1 0.8437 -2.5920 0.5158 34 1 1.8431 -2.3850 -2.1175 35 1 1.2442 -7.2025 -1.6612 36 1 -0.4485 -6.6344 -1.6257 37 1 -0.9223 -8.7433 -2.4959 38 1 0.7479 -8.9599 -3.1147 39 1 -2.1278 -6.7203 -5.1265 40 1 -2.1313 -11.0013 -6.9997 41 1 0.0749 -5.8361 -5.3049 42 1 1.4274 -6.9666 -4.9976 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001261466259.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:27:13 Heat of formation + Delta-G solvation = -62.253001 kcal Electronic energy + Delta-G solvation = -27128.473568 eV Core-core repulsion = 23109.432049 eV Total energy + Delta-G solvation = -4019.041519 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 322.147 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -43.16809 -41.87545 -40.20225 -39.05765 -36.79726 -35.94367 -34.99839 -34.45369 -32.09206 -31.56643 -30.09125 -28.47403 -27.85717 -27.12072 -24.98251 -23.32073 -22.41206 -21.67367 -21.43973 -20.78610 -19.52740 -18.95537 -18.12875 -17.92271 -17.44308 -17.15717 -17.04715 -16.66383 -16.28479 -16.16020 -15.70655 -15.43325 -15.21183 -14.75703 -14.60051 -14.53246 -14.13900 -13.97101 -13.89414 -13.82577 -13.72957 -13.36460 -13.33013 -13.28310 -12.81332 -12.66060 -12.29983 -12.20115 -11.98951 -11.23994 -11.06484 -10.79594 -10.64765 -10.62698 -10.50609 -10.41374 -9.76371 -9.50485 -8.33127 -6.46933 0.26916 0.70446 1.31466 1.51751 1.55799 1.76439 1.79824 2.03096 2.05205 2.46649 2.51778 2.97705 3.16047 3.23997 3.48412 3.77230 3.80757 3.91116 4.01618 4.21017 4.25885 4.33797 4.37972 4.43176 4.55259 4.65126 4.68594 4.75176 4.77588 4.89924 4.96482 5.05714 5.20485 5.23581 5.32752 5.51628 5.75091 5.85509 6.06082 6.10350 6.23399 6.49966 6.59657 6.82523 6.91993 7.02206 7.31046 8.79505 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.031429 B = 0.002583 C = 0.002550 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 890.672723 B =10836.165795 C =10978.051826 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.058 3.942 2 N -0.447 5.447 3 C -0.030 4.030 4 C -0.057 4.057 5 N -0.509 5.509 6 C 0.160 3.840 7 C 0.214 3.786 8 N -0.687 5.687 9 C 0.522 3.478 10 O -0.522 6.522 11 C 0.512 3.488 12 O -0.555 6.555 13 N -0.579 5.579 14 C 0.119 3.881 15 C -0.124 4.124 16 C 0.218 3.782 17 O -0.559 6.559 18 C -0.546 4.546 19 H 0.049 0.951 20 C 0.027 3.973 21 N -0.935 5.935 22 Si 1.008 2.992 23 H -0.284 1.284 24 H -0.338 1.338 25 H -0.257 1.257 26 C 0.095 3.905 27 H 0.086 0.914 28 H 0.095 0.905 29 H 0.115 0.885 30 H 0.215 0.785 31 H 0.187 0.813 32 H 0.098 0.902 33 H 0.107 0.893 34 H 0.415 0.585 35 H 0.084 0.916 36 H 0.078 0.922 37 H 0.081 0.919 38 H 0.087 0.913 39 H 0.381 0.619 40 H 0.267 0.733 41 H 0.076 0.924 42 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.059 23.628 16.733 29.027 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.083 4.083 2 N -0.129 5.129 3 C -0.165 4.165 4 C -0.206 4.206 5 N -0.230 5.230 6 C -0.101 4.101 7 C 0.090 3.910 8 N -0.342 5.342 9 C 0.302 3.698 10 O -0.398 6.398 11 C 0.296 3.704 12 O -0.434 6.434 13 N -0.311 5.311 14 C -0.003 4.003 15 C -0.162 4.162 16 C 0.177 3.823 17 O -0.368 6.368 18 C -0.584 4.584 19 H 0.067 0.933 20 C -0.173 4.173 21 N -0.573 5.573 22 Si 0.841 3.159 23 H -0.211 1.211 24 H -0.271 1.271 25 H -0.182 1.182 26 C -0.027 4.027 27 H 0.104 0.896 28 H 0.114 0.886 29 H 0.134 0.866 30 H 0.232 0.768 31 H 0.204 0.796 32 H 0.116 0.884 33 H 0.125 0.875 34 H 0.252 0.748 35 H 0.102 0.898 36 H 0.096 0.904 37 H 0.100 0.900 38 H 0.106 0.894 39 H 0.231 0.769 40 H 0.076 0.924 41 H 0.095 0.905 42 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 2.492 22.621 17.430 28.665 hybrid contribution -0.963 0.659 -1.130 1.625 sum 1.529 23.280 16.299 28.460 Atomic orbital electron populations 1.22448 0.74130 1.06667 1.05025 1.45559 1.09104 1.06014 1.52270 1.23412 0.90566 0.93910 1.08569 1.22809 0.98407 0.90386 1.08987 1.70188 1.19635 1.14027 1.19104 1.22840 0.86266 0.90880 1.10128 1.19545 1.03127 0.85960 0.82378 1.45681 1.66290 1.12275 1.09906 1.19711 0.78532 0.82876 0.88637 1.90766 1.49047 1.54531 1.45462 1.19976 0.79078 0.81509 0.89875 1.90731 1.51614 1.54552 1.46518 1.48438 1.61989 1.10659 1.10025 1.22219 1.01341 0.87042 0.89731 1.23000 1.01703 0.96431 0.95047 1.20120 0.78899 0.89448 0.93809 1.86093 1.31169 1.72382 1.47133 1.21292 0.99301 1.17354 1.20440 0.93321 1.25839 1.02721 0.93714 0.95061 1.70080 1.33466 1.25066 1.28653 0.84716 0.77534 0.73047 0.80564 1.21110 1.27098 1.18208 1.23035 1.00640 0.95821 0.83219 0.89585 0.88601 0.86603 0.76830 0.79575 0.88381 0.87464 0.74833 0.89751 0.90368 0.90010 0.89438 0.76903 0.92393 0.90548 0.90831 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.32 10.97 127.77 1.40 1.72 16 2 N -0.45 -5.72 3.15 -537.61 -1.69 -7.42 16 3 C -0.03 -0.34 11.58 83.09 0.96 0.62 16 4 C -0.06 -0.97 11.87 83.52 0.99 0.02 16 5 N -0.51 -11.67 11.25 -188.14 -2.12 -13.78 16 6 C 0.16 2.98 7.27 138.13 1.00 3.98 16 7 C 0.21 3.83 5.98 85.64 0.51 4.35 16 8 N -0.69 -15.02 5.54 -468.16 -2.59 -17.62 16 9 C 0.52 14.39 7.86 87.27 0.69 15.08 16 10 O -0.52 -15.49 14.12 -3.25 -0.05 -15.53 16 11 C 0.51 16.90 7.91 87.27 0.69 17.59 16 12 O -0.55 -20.26 16.73 -3.25 -0.05 -20.32 16 13 N -0.58 -20.07 3.33 -813.30 -2.70 -22.78 16 14 C 0.12 3.87 5.49 86.73 0.48 4.34 16 15 C -0.12 -4.62 5.90 31.78 0.19 -4.43 16 16 C 0.22 9.14 0.70 -10.14 -0.01 9.14 16 17 O -0.56 -22.51 8.52 -148.98 -1.27 -23.78 16 18 C -0.55 -28.41 8.89 25.60 0.23 -28.18 16 19 H 0.05 2.81 8.00 -2.91 -0.02 2.79 16 20 C 0.03 1.47 5.46 84.65 0.46 1.93 16 21 N -0.94 -55.73 13.96 21.45 0.30 -55.43 16 22 Si 1.01 46.83 24.93 68.60 1.71 48.54 16 23 H -0.28 -12.67 7.11 99.48 0.71 -11.96 16 24 H -0.34 -16.35 7.11 99.48 0.71 -15.64 16 25 H -0.26 -11.35 5.42 99.48 0.54 -10.81 16 26 C 0.10 3.64 6.07 86.86 0.53 4.17 16 27 H 0.09 0.46 8.14 -2.39 -0.02 0.44 16 28 H 0.10 0.44 7.05 -2.39 -0.02 0.43 16 29 H 0.12 0.05 8.14 -2.38 -0.02 0.03 16 30 H 0.22 0.67 8.06 -2.91 -0.02 0.65 16 31 H 0.19 2.28 8.06 -2.91 -0.02 2.26 16 32 H 0.10 1.92 8.14 -2.39 -0.02 1.90 16 33 H 0.11 1.49 7.07 -2.39 -0.02 1.48 16 34 H 0.42 9.18 7.94 -92.71 -0.74 8.44 16 35 H 0.08 2.54 7.71 -2.39 -0.02 2.52 16 36 H 0.08 2.51 7.57 -2.38 -0.02 2.49 16 37 H 0.08 3.09 6.65 -2.38 -0.02 3.07 16 38 H 0.09 3.23 8.03 -2.38 -0.02 3.21 16 39 H 0.38 13.53 8.99 -74.06 -0.67 12.87 16 40 H 0.27 15.10 8.31 -92.71 -0.77 14.33 16 41 H 0.08 2.89 8.02 -2.39 -0.02 2.87 16 42 H 0.07 2.91 7.99 -2.39 -0.02 2.89 16 Total: -1.00 -72.70 350.96 -0.84 -73.54 By element: Atomic # 1 Polarization: 24.74 SS G_CDS: -0.49 Total: 24.25 kcal Atomic # 6 Polarization: 22.20 SS G_CDS: 8.12 Total: 30.33 kcal Atomic # 7 Polarization: -108.21 SS G_CDS: -8.81 Total: -117.02 kcal Atomic # 8 Polarization: -58.26 SS G_CDS: -1.37 Total: -59.63 kcal Atomic # 14 Polarization: 46.83 SS G_CDS: 1.71 Total: 48.54 kcal Total: -72.70 -0.84 -73.54 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001261466259.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.289 kcal (2) G-P(sol) polarization free energy of solvation -72.704 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.414 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.839 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.542 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.253 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds