Wall clock time and date at job start Fri Apr 10 2020 18:27:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46505 * 1 3 3 N 1.40447 * 126.82323 * 2 1 4 4 C 1.30714 * 106.78837 * 179.97438 * 3 2 1 5 5 C 1.50707 * 125.52215 * 180.02562 * 4 3 2 6 6 C 1.53001 * 117.49676 * 8.72722 * 5 4 3 7 7 C 1.52993 * 117.50123 * 300.06745 * 5 4 3 8 8 N 1.33239 * 108.94945 * 0.02562 * 4 3 2 9 9 C 1.30829 * 109.82920 * 359.97438 * 8 4 3 10 10 C 1.50702 * 125.96102 * 179.97438 * 9 8 4 11 11 C 1.50702 * 109.46950 * 89.97979 * 10 9 8 12 12 O 1.20822 * 120.00230 * 359.97438 * 11 10 9 13 13 O 1.34226 * 119.99861 * 180.02562 * 11 10 9 14 14 C 1.45198 * 116.99990 * 179.97438 * 13 11 10 15 15 C 1.50701 * 109.47281 * 179.97438 * 14 13 11 16 16 O 1.21288 * 120.00048 * 0.02562 * 15 14 13 17 17 N 1.34769 * 120.00190 * 179.97438 * 15 14 13 18 18 C 1.46501 * 120.00169 * 180.02562 * 17 15 14 19 19 C 1.50699 * 109.47251 * 180.02562 * 18 17 15 20 20 H 1.07997 * 120.00378 * 359.97438 * 19 18 17 21 21 C 1.37876 * 120.00151 * 180.02562 * 19 18 17 22 22 N 1.31513 * 119.99946 * 359.97438 * 21 19 18 23 23 Si 1.86797 * 120.00255 * 179.97438 * 21 19 18 24 24 H 1.48499 * 109.47199 * 0.02562 * 23 21 19 25 25 H 1.48504 * 109.47350 * 119.99996 * 23 21 19 26 26 H 1.48501 * 109.47500 * 239.99746 * 23 21 19 27 27 H 1.09002 * 109.47241 * 90.02243 * 1 2 3 28 28 H 1.08996 * 109.47088 * 210.02752 * 1 2 3 29 29 H 1.09003 * 109.47136 * 330.02773 * 1 2 3 30 30 H 1.09001 * 115.54690 * 154.39168 * 5 4 3 31 31 H 1.08999 * 117.49922 * 359.97438 * 6 5 4 32 32 H 1.09000 * 117.49232 * 145.01679 * 6 5 4 33 33 H 1.08995 * 117.49902 * 214.98202 * 7 5 4 34 34 H 1.09002 * 117.49700 * 359.97241 * 7 5 4 35 35 H 1.09003 * 109.47186 * 209.97910 * 10 9 8 36 36 H 1.08998 * 109.47075 * 329.97660 * 10 9 8 37 37 H 1.08993 * 109.47486 * 299.99872 * 14 13 11 38 38 H 1.09001 * 109.46896 * 60.00228 * 14 13 11 39 39 H 0.96997 * 120.00428 * 0.02562 * 17 15 14 40 40 H 1.09005 * 109.47003 * 299.99973 * 18 17 15 41 41 H 1.09001 * 109.47058 * 60.00201 * 18 17 15 42 42 H 0.97005 * 120.00165 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.3068 1.1243 0.0000 4 6 3.5349 0.6764 0.0006 5 6 4.7777 1.5288 0.0013 6 6 4.6015 3.0346 0.2074 7 6 4.9764 2.4893 -1.1729 8 7 3.5096 -0.6557 0.0003 9 6 2.2707 -1.0761 0.0002 10 6 1.8246 -2.5156 -0.0006 11 6 1.6765 -2.9964 1.4200 12 8 1.9098 -2.2472 2.3387 13 8 1.2865 -4.2572 1.6645 14 6 1.1658 -4.6516 3.0567 15 6 0.7203 -6.0891 3.1348 16 8 0.5243 -6.7194 2.1173 17 7 0.5406 -6.6746 4.3353 18 6 0.1080 -8.0723 4.4112 19 6 -0.0174 -8.4815 5.8562 20 1 0.2034 -7.7717 6.6396 21 6 -0.4131 -9.7625 6.1780 22 7 -0.6815 -10.6270 5.2241 23 14 -0.5679 -10.2700 7.9691 24 1 -0.2126 -9.1219 8.8414 25 1 -1.9658 -10.6875 8.2462 26 1 0.3509 -11.4039 8.2435 27 1 -0.3634 -0.0004 -1.0277 28 1 -0.3633 -0.8897 0.5142 29 1 -0.3633 0.8903 0.5134 30 1 5.6667 1.0633 0.4268 31 1 3.5866 3.4088 0.3420 32 1 5.3748 3.5597 0.7680 33 1 5.9961 2.6559 -1.5198 34 1 4.2084 2.5044 -1.9462 35 1 0.8667 -2.5989 -0.5141 36 1 2.5669 -3.1257 -0.5152 37 1 2.1315 -4.5428 3.5503 38 1 0.4311 -4.0165 3.5518 39 1 0.6976 -6.1707 5.1491 40 1 -0.8580 -8.1809 3.9180 41 1 0.8425 -8.7073 3.9158 42 1 -0.9603 -11.5281 5.4505 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001326017389.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:27:41 Heat of formation + Delta-G solvation = -31.103896 kcal Electronic energy + Delta-G solvation = -25598.393402 eV Core-core repulsion = 21580.702610 eV Total energy + Delta-G solvation = -4017.690792 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 322.147 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -43.37010 -41.77473 -40.38237 -38.24400 -37.67152 -36.17956 -34.98514 -34.41811 -33.95075 -31.15488 -30.11814 -28.56925 -28.09809 -24.83514 -24.70529 -23.37933 -23.13810 -21.64723 -21.44077 -20.89017 -19.29999 -19.05719 -18.23825 -17.97368 -17.77756 -17.31414 -16.95312 -16.70745 -16.36741 -16.32123 -15.96673 -15.61561 -15.06569 -14.75837 -14.67956 -14.30976 -14.21380 -14.07673 -13.76430 -13.72497 -13.34769 -13.13097 -12.91548 -12.77751 -12.75830 -12.40998 -12.22863 -12.01486 -11.97164 -11.80065 -11.49033 -11.46840 -11.13442 -10.94032 -10.86144 -10.82979 -10.25515 -9.92559 -8.29848 -6.46038 0.27172 0.92970 1.06023 1.30982 1.44725 1.44926 1.55509 1.58356 1.70924 2.33557 2.54420 2.68332 2.96535 3.05711 3.26358 3.37518 3.56933 3.74324 3.86499 3.97180 4.03662 4.04861 4.05715 4.21044 4.30582 4.31368 4.49726 4.57109 4.74649 4.89408 5.05677 5.09516 5.14220 5.20609 5.22810 5.22947 5.30197 5.42137 5.62728 5.68004 5.82549 6.43394 6.63314 6.77749 6.95516 7.20567 7.35530 8.82303 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.032095 B = 0.001814 C = 0.001783 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 872.214038 B =15429.641452 C =15698.447252 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.081 3.919 2 N -0.371 5.371 3 N -0.332 5.332 4 C 0.242 3.758 5 C -0.097 4.097 6 C -0.152 4.152 7 C -0.143 4.143 8 N -0.555 5.555 9 C 0.284 3.716 10 C -0.029 4.029 11 C 0.474 3.526 12 O -0.526 6.526 13 O -0.336 6.336 14 C 0.062 3.938 15 C 0.501 3.499 16 O -0.581 6.581 17 N -0.699 5.699 18 C 0.266 3.734 19 C -0.557 4.557 20 H 0.085 0.915 21 C 0.005 3.995 22 N -0.929 5.929 23 Si 0.984 3.016 24 H -0.254 1.254 25 H -0.279 1.279 26 H -0.280 1.280 27 H 0.111 0.889 28 H 0.106 0.894 29 H 0.099 0.901 30 H 0.135 0.865 31 H 0.090 0.910 32 H 0.125 0.875 33 H 0.128 0.872 34 H 0.087 0.913 35 H 0.174 0.826 36 H 0.166 0.834 37 H 0.121 0.879 38 H 0.127 0.873 39 H 0.412 0.588 40 H -0.005 1.005 41 H -0.007 1.007 42 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.888 26.622 -11.282 29.507 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 N -0.161 5.161 3 N -0.161 5.161 4 C -0.039 4.039 5 C -0.118 4.118 6 C -0.189 4.189 7 C -0.182 4.182 8 N -0.283 5.283 9 C 0.007 3.993 10 C -0.069 4.069 11 C 0.317 3.683 12 O -0.415 6.415 13 O -0.251 6.251 14 C -0.015 4.015 15 C 0.286 3.714 16 O -0.461 6.461 17 N -0.351 5.351 18 C 0.144 3.856 19 C -0.595 4.595 20 H 0.103 0.897 21 C -0.194 4.194 22 N -0.567 5.567 23 Si 0.807 3.193 24 H -0.178 1.178 25 H -0.205 1.205 26 H -0.206 1.206 27 H 0.129 0.871 28 H 0.124 0.876 29 H 0.117 0.883 30 H 0.153 0.847 31 H 0.109 0.891 32 H 0.143 0.857 33 H 0.146 0.854 34 H 0.106 0.894 35 H 0.191 0.809 36 H 0.184 0.816 37 H 0.138 0.862 38 H 0.144 0.856 39 H 0.248 0.752 40 H 0.013 0.987 41 H 0.011 0.989 42 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 5.698 26.730 -11.725 29.739 hybrid contribution -0.409 -0.803 1.247 1.539 sum 5.290 25.927 -10.477 28.460 Atomic orbital electron populations 1.22415 0.71181 1.06280 1.06037 1.50409 1.09242 1.03076 1.53354 1.77875 1.01653 1.08483 1.28095 1.23617 0.93394 0.89230 0.97671 1.20272 0.92694 0.90658 1.08156 1.23098 1.03851 0.92155 0.99833 1.23103 1.04247 0.99737 0.91074 1.70198 1.20733 1.11772 1.25642 1.23579 0.86168 0.92211 0.97351 1.19894 1.09438 0.86412 0.91110 1.23614 0.72589 0.79364 0.92772 1.90740 1.46888 1.56371 1.47529 1.86528 1.78493 1.30472 1.29606 1.22750 1.05678 0.92287 0.80793 1.20635 0.77982 0.88931 0.83828 1.90694 1.52853 1.66550 1.36031 1.46049 1.66953 1.14461 1.07610 1.18640 0.93039 0.77012 0.96959 1.21648 1.47706 0.98411 0.91719 0.89681 1.26019 0.94109 0.96194 1.03118 1.70130 1.45680 1.05988 1.34931 0.85125 0.77731 0.78561 0.77883 1.17761 1.20493 1.20572 0.87094 0.87578 0.88254 0.84715 0.89112 0.85669 0.85376 0.89417 0.80860 0.81647 0.86160 0.85561 0.75191 0.98720 0.98878 0.92210 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.83 11.16 127.77 1.43 2.25 16 2 N -0.37 -7.47 4.04 -359.86 -1.45 -8.92 16 3 N -0.33 -8.15 12.24 -51.33 -0.63 -8.78 16 4 C 0.24 6.06 7.69 138.63 1.07 7.12 16 5 C -0.10 -1.78 6.33 -11.54 -0.07 -1.86 16 6 C -0.15 -2.08 10.14 30.62 0.31 -1.77 16 7 C -0.14 -1.85 10.24 30.62 0.31 -1.54 16 8 N -0.56 -14.77 11.19 -179.72 -2.01 -16.78 16 9 C 0.28 6.11 6.48 138.23 0.90 7.01 16 10 C -0.03 -0.44 5.94 29.10 0.17 -0.27 16 11 C 0.47 10.61 7.95 71.24 0.57 11.18 16 12 O -0.53 -14.84 15.78 21.98 0.35 -14.49 16 13 O -0.34 -8.83 9.75 -45.03 -0.44 -9.27 16 14 C 0.06 1.63 5.94 71.24 0.42 2.05 16 15 C 0.50 18.94 7.91 87.66 0.69 19.64 16 16 O -0.58 -27.69 16.50 15.74 0.26 -27.43 16 17 N -0.70 -27.79 5.55 -466.78 -2.59 -30.38 16 18 C 0.27 14.00 5.43 85.63 0.46 14.46 16 19 C -0.56 -29.30 9.28 25.60 0.24 -29.06 16 20 H 0.09 4.03 7.60 -2.91 -0.02 4.01 16 21 C 0.01 0.30 5.46 84.65 0.46 0.76 16 22 N -0.93 -54.64 13.29 21.45 0.28 -54.36 16 23 Si 0.98 41.38 29.54 68.60 2.03 43.41 16 24 H -0.25 -9.89 7.11 99.48 0.71 -9.19 16 25 H -0.28 -11.57 7.11 99.48 0.71 -10.86 16 26 H -0.28 -11.65 7.11 99.48 0.71 -10.94 16 27 H 0.11 0.56 8.14 -2.39 -0.02 0.54 16 28 H 0.11 0.77 7.72 -2.39 -0.02 0.75 16 29 H 0.10 0.96 8.14 -2.39 -0.02 0.95 16 30 H 0.14 2.27 8.14 -2.39 -0.02 2.25 16 31 H 0.09 1.48 7.88 -2.39 -0.02 1.46 16 32 H 0.13 1.14 8.14 -2.39 -0.02 1.12 16 33 H 0.13 1.03 8.14 -2.39 -0.02 1.01 16 34 H 0.09 1.28 8.14 -2.39 -0.02 1.26 16 35 H 0.17 1.11 7.76 -2.39 -0.02 1.09 16 36 H 0.17 1.96 8.14 -2.39 -0.02 1.94 16 37 H 0.12 2.74 8.13 -2.39 -0.02 2.72 16 38 H 0.13 2.68 8.13 -2.39 -0.02 2.66 16 39 H 0.41 13.18 8.32 -92.71 -0.77 12.41 16 40 H -0.01 -0.30 8.14 -2.38 -0.02 -0.32 16 41 H -0.01 -0.40 8.14 -2.39 -0.02 -0.42 16 42 H 0.27 14.76 8.31 -92.70 -0.77 13.99 16 Total: -1.00 -83.65 376.25 3.04 -80.61 By element: Atomic # 1 Polarization: 16.12 SS G_CDS: 0.29 Total: 16.41 kcal Atomic # 6 Polarization: 23.03 SS G_CDS: 6.96 Total: 29.99 kcal Atomic # 7 Polarization: -112.83 SS G_CDS: -6.40 Total: -119.22 kcal Atomic # 8 Polarization: -51.36 SS G_CDS: 0.17 Total: -51.19 kcal Atomic # 14 Polarization: 41.38 SS G_CDS: 2.03 Total: 43.41 kcal Total: -83.65 3.04 -80.61 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001326017389.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.508 kcal (2) G-P(sol) polarization free energy of solvation -83.653 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.145 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.041 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.612 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.104 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds