Wall clock time and date at job start Fri Apr 10 2020 18:27:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.34949 * 126.03365 * 2 1 4 4 C 1.35319 * 107.74082 * 180.02562 * 3 2 1 5 5 C 1.39871 * 107.92372 * 359.97438 * 4 3 2 6 6 C 1.50691 * 125.89840 * 180.02562 * 5 4 3 7 7 N 1.46500 * 109.47496 * 95.00351 * 6 5 4 8 8 C 1.34773 * 120.00625 * 179.97438 * 7 6 5 9 9 O 1.21356 * 119.99693 * 359.97438 * 8 7 6 10 10 C 1.49447 * 119.99956 * 179.97438 * 8 7 6 11 11 O 1.21344 * 120.00711 * 0.02562 * 10 8 7 12 12 N 1.34785 * 119.99698 * 179.97438 * 10 8 7 13 13 C 1.47019 * 125.64770 * 0.04465 * 12 10 8 14 14 C 1.54324 * 107.27118 * 181.02535 * 13 12 10 15 15 C 1.55155 * 102.94145 * 22.18930 * 14 13 12 16 16 O 1.42900 * 111.03660 * 82.59071 * 15 14 13 17 17 C 1.50702 * 111.00366 * 206.42519 * 15 14 13 18 18 H 1.08002 * 120.00299 * 353.65569 * 17 15 14 19 19 C 1.37884 * 119.99942 * 173.37128 * 17 15 14 20 20 N 1.31514 * 119.99698 * 0.28408 * 19 17 15 21 21 Si 1.86794 * 119.99837 * 180.27476 * 19 17 15 22 22 H 1.48501 * 109.47188 * 90.00793 * 21 19 17 23 23 H 1.48501 * 109.47085 * 210.00372 * 21 19 17 24 24 H 1.48498 * 109.47634 * 330.00608 * 21 19 17 25 25 C 1.47420 * 125.64611 * 180.02562 * 12 10 8 26 26 N 1.30842 * 108.20005 * 0.26596 * 5 4 3 27 27 H 1.08996 * 109.47060 * 90.00359 * 1 2 3 28 28 H 1.08996 * 109.47016 * 210.00286 * 1 2 3 29 29 H 1.09004 * 109.46997 * 330.00351 * 1 2 3 30 30 H 1.07994 * 126.12979 * 0.03122 * 3 2 1 31 31 H 1.08004 * 126.03976 * 180.02562 * 4 3 2 32 32 H 1.08997 * 109.47483 * 334.99841 * 6 5 4 33 33 H 1.09000 * 109.47042 * 214.99954 * 6 5 4 34 34 H 0.97002 * 119.99332 * 359.97438 * 7 6 5 35 35 H 1.09004 * 109.88269 * 300.43820 * 13 12 10 36 36 H 1.08991 * 109.88590 * 61.60304 * 13 12 10 37 37 H 1.09000 * 110.71623 * 263.83158 * 14 13 12 38 38 H 1.09000 * 110.72442 * 140.55473 * 14 13 12 39 39 H 0.96704 * 113.99783 * 183.19809 * 16 15 14 40 40 H 0.97005 * 119.99651 * 179.97438 * 20 19 17 41 41 H 1.09003 * 110.36919 * 37.07159 * 25 12 10 42 42 H 1.09002 * 110.37040 * 274.74684 * 25 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2589 1.0913 0.0000 4 6 3.5437 0.6666 -0.0006 5 6 3.5347 -0.7321 -0.0003 6 6 4.7497 -1.6235 -0.0003 7 7 5.0723 -2.0094 1.3757 8 6 6.1276 -2.8109 1.6211 9 8 6.8104 -3.2134 0.7022 10 6 6.4569 -3.2039 3.0249 11 8 5.7739 -2.8018 3.9437 12 7 7.5120 -4.0060 3.2702 13 6 8.4192 -4.5626 2.2560 14 6 9.4537 -5.4361 2.9967 15 6 8.7315 -5.7776 4.3267 16 8 7.8409 -6.8823 4.1579 17 6 9.7252 -6.0517 5.4260 18 1 10.7807 -6.0959 5.2013 19 6 9.2874 -6.2404 6.7199 20 7 8.0022 -6.1866 6.9935 21 14 10.5198 -6.5725 8.0837 22 1 10.9545 -5.2850 8.6825 23 1 9.8859 -7.4155 9.1291 24 1 11.6987 -7.2812 7.5240 25 6 7.9477 -4.4699 4.6000 26 7 2.2891 -1.1328 -0.0054 27 1 -0.3633 -0.0001 -1.0276 28 1 -0.3633 -0.8899 0.5139 29 1 -0.3633 0.8901 0.5138 30 1 1.9281 2.1193 0.0005 31 1 4.4211 1.2963 -0.0003 32 1 5.5935 -1.0877 -0.4347 33 1 4.5446 -2.5173 -0.5895 34 1 4.5262 -1.6879 2.1102 35 1 7.8562 -5.1732 1.5501 36 1 8.9260 -3.7547 1.7285 37 1 10.3675 -4.8733 3.1875 38 1 9.6688 -6.3426 2.4309 39 1 7.3310 -7.1010 4.9499 40 1 7.6942 -6.3196 7.9037 41 1 7.0837 -4.6707 5.2335 42 1 8.5971 -3.7290 5.0663 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001326128101.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:27:45 Heat of formation + Delta-G solvation = -52.125478 kcal Electronic energy + Delta-G solvation = -26787.745501 eV Core-core repulsion = 22769.143145 eV Total energy + Delta-G solvation = -4018.602356 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 322.147 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -42.26220 -41.73387 -40.00470 -38.87503 -36.69042 -35.89152 -34.23403 -33.98874 -31.94241 -31.16474 -29.86341 -29.54489 -27.64059 -26.40197 -24.99271 -23.20851 -22.12323 -21.57142 -21.36535 -20.62492 -19.16542 -18.80274 -18.02832 -17.81921 -17.29405 -17.07338 -16.85222 -16.29931 -16.20909 -16.03077 -15.58536 -15.09551 -14.83716 -14.76383 -14.66758 -14.48291 -13.99419 -13.92049 -13.55282 -13.53373 -13.34346 -13.28088 -13.11916 -12.83486 -12.70515 -12.51849 -12.34638 -12.22888 -12.09619 -11.70642 -11.19309 -10.81480 -10.63526 -10.40828 -10.39670 -10.27972 -9.63310 -9.57829 -8.24528 -6.41746 0.32995 0.71529 1.23440 1.44263 1.46556 1.56346 1.60093 1.79951 2.11314 2.38963 2.61744 3.01467 3.31716 3.40859 3.78195 3.78728 4.07421 4.12752 4.16487 4.28522 4.34778 4.43525 4.48893 4.67793 4.69771 4.75026 4.75733 4.83497 4.98695 5.02898 5.06617 5.07999 5.16943 5.35396 5.45123 5.53781 5.75157 5.94180 6.05896 6.11635 6.36036 6.58247 6.63878 6.67888 6.89886 7.27356 7.35192 8.80914 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.027167 B = 0.002435 C = 0.002338 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1030.420140 B =11496.199854 C =11972.419836 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.090 3.910 2 N -0.375 5.375 3 C 0.064 3.936 4 C -0.272 4.272 5 C 0.037 3.963 6 C 0.206 3.794 7 N -0.685 5.685 8 C 0.522 3.478 9 O -0.525 6.525 10 C 0.503 3.497 11 O -0.563 6.563 12 N -0.582 5.582 13 C 0.118 3.882 14 C -0.115 4.115 15 C 0.232 3.768 16 O -0.588 6.588 17 C -0.554 4.554 18 H 0.071 0.929 19 C 0.026 3.974 20 N -0.915 5.915 21 Si 0.966 3.034 22 H -0.275 1.275 23 H -0.285 1.285 24 H -0.266 1.266 25 C 0.106 3.894 26 N -0.321 5.321 27 H 0.089 0.911 28 H 0.083 0.917 29 H 0.121 0.879 30 H 0.219 0.781 31 H 0.167 0.833 32 H 0.110 0.890 33 H 0.080 0.920 34 H 0.414 0.586 35 H 0.069 0.931 36 H 0.088 0.912 37 H 0.094 0.906 38 H 0.085 0.915 39 H 0.374 0.626 40 H 0.270 0.730 41 H 0.057 0.943 42 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.508 16.192 -14.451 24.565 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.049 4.049 2 N -0.158 5.158 3 C -0.082 4.082 4 C -0.302 4.302 5 C -0.127 4.127 6 C 0.083 3.917 7 N -0.339 5.339 8 C 0.302 3.698 9 O -0.401 6.401 10 C 0.286 3.714 11 O -0.443 6.443 12 N -0.313 5.313 13 C -0.004 4.004 14 C -0.153 4.153 15 C 0.191 3.809 16 O -0.396 6.396 17 C -0.592 4.592 18 H 0.089 0.911 19 C -0.175 4.175 20 N -0.554 5.554 21 Si 0.792 3.208 22 H -0.201 1.201 23 H -0.210 1.210 24 H -0.191 1.191 25 C -0.016 4.016 26 N -0.146 5.146 27 H 0.108 0.892 28 H 0.101 0.899 29 H 0.139 0.861 30 H 0.236 0.764 31 H 0.184 0.816 32 H 0.128 0.872 33 H 0.099 0.901 34 H 0.250 0.750 35 H 0.087 0.913 36 H 0.106 0.894 37 H 0.113 0.887 38 H 0.104 0.896 39 H 0.223 0.777 40 H 0.079 0.921 41 H 0.076 0.924 42 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -12.276 15.160 -15.163 24.707 hybrid contribution 0.260 0.446 1.995 2.061 sum -12.016 15.606 -13.168 23.692 Atomic orbital electron populations 1.22249 0.71847 1.06009 1.04818 1.48943 1.08087 1.03368 1.55395 1.23266 0.90347 0.94898 0.99686 1.21759 0.98871 0.93287 1.16249 1.22154 0.92551 0.95111 1.02922 1.19663 0.92873 0.97391 0.81802 1.45668 1.29077 1.48422 1.10701 1.19698 0.81870 0.79889 0.88340 1.90727 1.50194 1.53821 1.45387 1.20171 0.80998 0.80288 0.89934 1.90701 1.50693 1.56073 1.46882 1.48699 1.26783 1.44742 1.11105 1.22193 0.90920 0.97469 0.89817 1.22730 0.97586 0.99600 0.95347 1.19884 0.86455 0.81658 0.92869 1.86119 1.59226 1.52797 1.41456 1.21759 0.94160 1.50468 0.92830 0.91066 1.25840 0.97163 0.93386 1.01085 1.69834 1.14696 1.49351 1.21557 0.85422 0.78994 0.78152 0.78263 1.20076 1.21033 1.19079 1.23062 0.98738 0.97818 0.82000 1.77309 1.02123 1.10263 1.24942 0.89218 0.89857 0.86070 0.76401 0.81572 0.87161 0.90149 0.74950 0.91255 0.89373 0.88740 0.89617 0.77679 0.92060 0.92450 0.92443 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.66 11.47 127.77 1.47 2.13 16 2 N -0.38 -6.07 4.01 -369.56 -1.48 -7.55 16 3 C 0.06 0.79 11.49 83.54 0.96 1.75 16 4 C -0.27 -4.46 10.74 21.99 0.24 -4.23 16 5 C 0.04 0.82 6.59 43.10 0.28 1.10 16 6 C 0.21 4.71 6.23 85.63 0.53 5.25 16 7 N -0.69 -19.24 5.54 -468.16 -2.59 -21.83 16 8 C 0.52 18.00 7.86 87.27 0.69 18.68 16 9 O -0.52 -18.73 14.12 -3.26 -0.05 -18.77 16 10 C 0.50 20.99 7.91 87.27 0.69 21.68 16 11 O -0.56 -26.03 16.73 -3.23 -0.05 -26.08 16 12 N -0.58 -25.29 3.33 -813.42 -2.71 -28.00 16 13 C 0.12 4.50 5.49 86.73 0.48 4.98 16 14 C -0.11 -4.61 6.13 31.78 0.19 -4.41 16 15 C 0.23 11.38 0.88 -10.15 -0.01 11.37 16 16 O -0.59 -30.81 13.18 -148.98 -1.96 -32.77 16 17 C -0.55 -28.70 8.27 25.60 0.21 -28.49 16 18 H 0.07 3.56 7.79 -2.91 -0.02 3.54 16 19 C 0.03 1.36 5.27 84.66 0.45 1.81 16 20 N -0.92 -49.48 10.67 21.45 0.23 -49.25 16 21 Si 0.97 41.47 29.54 68.60 2.03 43.49 16 22 H -0.28 -11.59 7.11 99.48 0.71 -10.88 16 23 H -0.28 -12.13 7.11 99.48 0.71 -11.42 16 24 H -0.27 -11.11 7.11 99.48 0.71 -10.41 16 25 C 0.11 5.23 5.38 86.85 0.47 5.70 16 26 N -0.32 -7.73 12.58 -47.39 -0.60 -8.33 16 27 H 0.09 0.42 8.14 -2.39 -0.02 0.40 16 28 H 0.08 0.75 8.14 -2.39 -0.02 0.73 16 29 H 0.12 0.10 8.14 -2.38 -0.02 0.08 16 30 H 0.22 0.57 8.06 -2.91 -0.02 0.55 16 31 H 0.17 2.06 8.06 -2.91 -0.02 2.04 16 32 H 0.11 2.14 8.14 -2.39 -0.02 2.12 16 33 H 0.08 1.94 8.14 -2.39 -0.02 1.92 16 34 H 0.41 11.71 7.94 -92.71 -0.74 10.98 16 35 H 0.07 2.68 7.58 -2.39 -0.02 2.66 16 36 H 0.09 2.98 7.69 -2.39 -0.02 2.96 16 37 H 0.09 3.46 8.03 -2.39 -0.02 3.44 16 38 H 0.09 3.26 8.14 -2.39 -0.02 3.24 16 39 H 0.37 20.31 7.51 -74.05 -0.56 19.75 16 40 H 0.27 14.00 8.31 -92.70 -0.77 13.23 16 41 H 0.06 3.20 7.32 -2.39 -0.02 3.18 16 42 H 0.06 2.89 8.03 -2.39 -0.02 2.87 16 Total: -1.00 -70.02 359.89 -0.76 -70.79 By element: Atomic # 1 Polarization: 41.20 SS G_CDS: -0.22 Total: 40.98 kcal Atomic # 6 Polarization: 30.68 SS G_CDS: 6.64 Total: 37.32 kcal Atomic # 7 Polarization: -107.81 SS G_CDS: -7.15 Total: -114.96 kcal Atomic # 8 Polarization: -75.56 SS G_CDS: -2.06 Total: -77.63 kcal Atomic # 14 Polarization: 41.47 SS G_CDS: 2.03 Total: 43.49 kcal Total: -70.02 -0.76 -70.79 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001326128101.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.663 kcal (2) G-P(sol) polarization free energy of solvation -70.024 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.361 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.765 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.789 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.125 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds