Wall clock time and date at job start Fri Apr 10 2020 18:27:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09006 * 109.47068 * 2 1 4 4 O 1.42902 * 109.47290 * 120.00258 * 2 1 3 5 5 C 1.52998 * 109.46741 * 240.00199 * 2 1 3 6 6 H 1.09007 * 109.99313 * 174.80015 * 5 2 1 7 7 C 1.54319 * 109.88301 * 295.89309 * 5 2 1 8 8 C 1.55158 * 103.10012 * 141.70081 * 7 5 2 9 9 C 1.54909 * 101.58257 * 324.41294 * 8 7 5 10 10 N 1.47418 * 104.83066 * 37.00754 * 9 8 7 11 11 C 1.34780 * 125.64806 * 155.91025 * 10 9 8 12 12 O 1.21363 * 120.00160 * 175.10130 * 11 10 9 13 13 C 1.49303 * 120.00004 * 355.10678 * 11 10 9 14 14 O 1.21415 * 120.00039 * 359.97438 * 13 11 10 15 15 N 1.34779 * 120.00586 * 179.97438 * 13 11 10 16 16 C 1.40290 * 120.00395 * 179.97438 * 15 13 11 17 17 C 1.40722 * 126.10178 * 359.69177 * 16 15 13 18 18 N 1.30875 * 108.37759 * 179.85274 * 17 16 15 19 19 N 1.40066 * 108.43323 * 0.40542 * 18 17 16 20 20 C 1.37289 * 126.05275 * 179.73788 * 19 18 17 21 21 H 1.07997 * 120.00059 * 180.02562 * 20 19 18 22 22 C 1.39009 * 120.00146 * 359.97438 * 20 19 18 23 23 N 1.31285 * 120.00119 * 0.02562 * 22 20 19 24 24 Si 1.86807 * 120.00236 * 179.97438 * 22 20 19 25 25 H 1.48499 * 109.46606 * 60.00211 * 24 22 20 26 26 H 1.48493 * 109.47069 * 180.02562 * 24 22 20 27 27 H 1.48499 * 109.47016 * 300.00668 * 24 22 20 28 28 C 1.35791 * 126.09951 * 180.02562 * 16 15 13 29 29 H 1.09001 * 109.47351 * 65.56840 * 1 2 3 30 30 H 1.08996 * 109.47075 * 185.57812 * 1 2 3 31 31 H 1.09000 * 109.46842 * 305.57245 * 1 2 3 32 32 H 0.96705 * 113.99593 * 299.99573 * 4 2 1 33 33 H 1.09001 * 110.71832 * 23.25405 * 7 5 2 34 34 H 1.09003 * 110.72498 * 260.15822 * 7 5 2 35 35 H 1.09007 * 111.00441 * 82.48727 * 8 7 5 36 36 H 1.09002 * 111.00706 * 206.33316 * 8 7 5 37 37 H 1.09001 * 110.36657 * 155.84363 * 9 8 7 38 38 H 1.08995 * 110.36196 * 278.16669 * 9 8 7 39 39 H 0.97002 * 119.99645 * 0.02562 * 15 13 11 40 40 H 1.07998 * 125.81061 * 359.97438 * 17 16 15 41 41 H 0.96994 * 119.99876 * 179.97438 * 23 22 20 42 42 H 1.08005 * 126.25118 * 359.94063 * 28 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 8 2.0064 -0.6737 1.1668 5 6 2.0399 -0.7212 -1.2493 6 1 3.1260 -0.6465 -1.3056 7 6 1.6173 -2.2048 -1.2080 8 6 1.2644 -2.5112 -2.6875 9 6 0.6393 -1.1689 -3.1426 10 7 1.4314 -0.1320 -2.4566 11 6 1.5759 1.1444 -2.8647 12 8 2.1807 1.9377 -2.1735 13 6 0.9917 1.5824 -4.1670 14 8 0.3870 0.7886 -4.8587 15 7 1.1357 2.8588 -4.5750 16 6 0.5873 3.2702 -5.7990 17 6 -0.1286 2.4610 -6.7006 18 7 -0.4814 3.1961 -7.7243 19 7 0.0005 4.4958 -7.5233 20 6 -0.1599 5.5582 -8.3779 21 1 0.2549 6.5226 -8.1244 22 6 -0.8553 5.3924 -9.5701 23 7 -1.3591 4.2200 -9.8786 24 14 -1.0741 6.8381 -10.7327 25 1 0.2582 7.3352 -11.1606 26 1 -1.8466 6.4029 -11.9238 27 1 -1.8082 7.9257 -10.0373 28 6 0.6579 4.5189 -6.3280 29 1 -0.3634 0.4250 -0.9356 30 1 -0.3633 -1.0228 0.0999 31 1 -0.3633 0.5978 0.8359 32 1 1.7211 -0.2701 1.9980 33 1 0.7456 -2.3398 -0.5677 34 1 2.4427 -2.8318 -0.8706 35 1 2.1609 -2.7400 -3.2638 36 1 0.5400 -3.3229 -2.7564 37 1 0.7243 -1.0580 -4.2236 38 1 -0.4051 -1.1136 -2.8356 39 1 1.6191 3.4929 -4.0226 40 1 -0.3508 1.4123 -6.5692 41 1 -1.8446 4.1044 -10.7103 42 1 1.1448 5.3743 -5.8833 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001327353126.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:27:50 Heat of formation + Delta-G solvation = -19.706518 kcal Electronic energy + Delta-G solvation = -27309.602676 eV Core-core repulsion = 23292.406111 eV Total energy + Delta-G solvation = -4017.196565 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 322.147 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -40.91129 -39.81463 -38.69084 -37.60902 -36.69030 -34.41323 -33.22418 -31.72781 -31.45195 -30.34332 -28.35004 -28.07139 -25.73809 -24.66932 -23.39363 -22.19027 -21.23819 -20.65017 -19.52654 -19.11126 -17.70321 -17.33706 -17.28445 -16.91422 -16.27104 -15.53521 -15.39116 -15.18848 -14.82738 -14.60274 -14.20752 -13.78055 -13.74674 -13.49142 -13.20256 -13.12931 -13.01042 -12.89942 -12.49639 -12.05698 -11.96011 -11.75164 -11.68688 -11.38187 -11.28708 -11.10094 -11.01810 -10.87694 -10.79241 -10.59446 -10.31280 -10.09230 -9.24725 -9.07678 -8.90537 -8.81301 -8.15271 -6.80372 -6.62251 -4.29753 1.61020 2.36139 2.92736 3.02212 3.06089 3.28086 3.58714 3.68750 3.81596 4.12328 4.33267 4.34272 4.38551 4.58315 4.65887 4.82669 4.89777 4.96324 4.98455 5.09029 5.18061 5.34153 5.55933 5.64474 5.65870 5.75101 5.79547 5.85199 5.91364 6.05702 6.15508 6.19621 6.33426 6.73875 6.86360 6.93189 7.14324 7.18802 7.35854 7.65787 7.80128 8.07440 8.15930 8.46338 8.67179 9.28928 9.57549 10.33453 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.033825 B = 0.002533 C = 0.002424 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 827.593178 B =11049.399998 C =11548.564743 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C 0.090 3.910 3 H 0.071 0.929 4 O -0.565 6.565 5 C 0.144 3.856 6 H 0.084 0.916 7 C -0.120 4.120 8 C -0.138 4.138 9 C 0.093 3.907 10 N -0.586 5.586 11 C 0.528 3.472 12 O -0.528 6.528 13 C 0.487 3.513 14 O -0.518 6.518 15 N -0.582 5.582 16 C -0.069 4.069 17 C -0.026 4.026 18 N -0.261 5.261 19 N -0.138 5.138 20 C -0.322 4.322 21 H 0.118 0.882 22 C 0.047 3.953 23 N -0.768 5.768 24 Si 0.936 3.064 25 H -0.266 1.266 26 H -0.276 1.276 27 H -0.266 1.266 28 C -0.078 4.078 29 H 0.067 0.933 30 H 0.065 0.935 31 H 0.057 0.943 32 H 0.380 0.620 33 H 0.081 0.919 34 H 0.083 0.917 35 H 0.077 0.923 36 H 0.085 0.915 37 H 0.113 0.887 38 H 0.072 0.928 39 H 0.409 0.591 40 H 0.178 0.822 41 H 0.277 0.723 42 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.940 -9.215 16.205 19.054 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.241 4.241 2 C 0.030 3.970 3 H 0.089 0.911 4 O -0.371 6.371 5 C 0.041 3.959 6 H 0.102 0.898 7 C -0.158 4.158 8 C -0.176 4.176 9 C -0.029 4.029 10 N -0.322 5.322 11 C 0.312 3.688 12 O -0.404 6.404 13 C 0.268 3.732 14 O -0.395 6.395 15 N -0.225 5.225 16 C -0.175 4.175 17 C -0.202 4.202 18 N -0.091 5.091 19 N 0.096 4.904 20 C -0.454 4.454 21 H 0.135 0.865 22 C -0.171 4.171 23 N -0.394 5.394 24 Si 0.760 3.240 25 H -0.191 1.191 26 H -0.201 1.201 27 H -0.191 1.191 28 C -0.229 4.229 29 H 0.086 0.914 30 H 0.084 0.916 31 H 0.076 0.924 32 H 0.227 0.773 33 H 0.100 0.900 34 H 0.101 0.899 35 H 0.095 0.905 36 H 0.104 0.896 37 H 0.131 0.869 38 H 0.090 0.910 39 H 0.244 0.756 40 H 0.195 0.805 41 H 0.087 0.913 42 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges 3.367 -9.746 14.290 17.621 hybrid contribution 0.320 1.429 1.092 1.827 sum 3.687 -8.317 15.382 17.871 Atomic orbital electron populations 1.22498 0.96212 1.02566 1.02831 1.22049 0.93285 0.96276 0.85390 0.91057 1.86420 1.77188 1.57627 1.15817 1.21530 0.98118 0.92994 0.83240 0.89750 1.22638 1.02698 0.93478 0.96972 1.22898 1.01750 0.97184 0.95798 1.22792 0.94532 0.85116 1.00463 1.48337 1.49551 1.09598 1.24689 1.20056 0.80740 0.81242 0.86770 1.90723 1.41929 1.51658 1.56104 1.19513 0.83640 0.83392 0.86666 1.90588 1.41658 1.51805 1.55483 1.42136 1.51328 1.09607 1.19414 1.17242 1.14967 0.94588 0.90724 1.24139 1.02663 1.00538 0.92828 1.78265 1.22383 0.87689 1.20800 1.44554 1.28355 1.07339 1.10187 1.19879 1.37083 0.88730 0.99742 0.86481 1.25665 0.95332 0.98149 0.97959 1.70194 1.25314 1.21871 1.21993 0.85870 0.79192 0.79958 0.79019 1.19081 1.20081 1.19091 1.21303 1.11453 0.97452 0.92704 0.91428 0.91565 0.92430 0.77307 0.89999 0.89853 0.90464 0.89594 0.86871 0.91012 0.75624 0.80544 0.91284 0.83370 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.75 9.12 37.16 0.34 -1.42 16 2 C 0.09 0.94 3.25 -26.73 -0.09 0.85 16 3 H 0.07 0.88 6.93 -51.93 -0.36 0.52 16 4 O -0.57 -5.13 12.86 -35.23 -0.45 -5.59 16 5 C 0.14 1.59 2.98 -66.70 -0.20 1.39 16 6 H 0.08 1.00 8.14 -51.92 -0.42 0.57 16 7 C -0.12 -1.03 5.86 -24.90 -0.15 -1.17 16 8 C -0.14 -1.16 7.09 -24.58 -0.17 -1.33 16 9 C 0.09 1.05 6.24 -2.53 -0.02 1.03 16 10 N -0.59 -7.51 2.01 -163.24 -0.33 -7.84 16 11 C 0.53 8.23 7.59 -11.65 -0.09 8.14 16 12 O -0.53 -8.80 15.46 5.49 0.08 -8.71 16 13 C 0.49 8.75 7.82 -11.65 -0.09 8.66 16 14 O -0.52 -10.05 10.85 5.44 0.06 -10.00 16 15 N -0.58 -10.92 5.45 -10.45 -0.06 -10.98 16 16 C -0.07 -1.58 6.90 -83.92 -0.58 -2.16 16 17 C -0.03 -0.66 10.85 -17.02 -0.18 -0.85 16 18 N -0.26 -7.39 10.39 30.81 0.32 -7.07 16 19 N -0.14 -3.71 3.73 -11.40 -0.04 -3.76 16 20 C -0.32 -8.37 10.25 -14.82 -0.15 -8.52 16 21 H 0.12 2.70 7.83 -52.49 -0.41 2.29 16 22 C 0.05 1.18 5.50 -17.50 -0.10 1.08 16 23 N -0.77 -21.00 11.81 55.50 0.66 -20.34 16 24 Si 0.94 18.56 29.55 -169.99 -5.02 13.54 16 25 H -0.27 -5.13 7.11 56.52 0.40 -4.73 16 26 H -0.28 -5.42 7.11 56.52 0.40 -5.02 16 27 H -0.27 -5.13 7.11 56.52 0.40 -4.73 16 28 C -0.08 -1.81 11.50 -16.38 -0.19 -2.00 16 29 H 0.07 0.77 7.16 -51.93 -0.37 0.40 16 30 H 0.07 0.57 6.49 -51.93 -0.34 0.23 16 31 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 32 H 0.38 1.97 9.08 45.56 0.41 2.39 16 33 H 0.08 0.67 6.09 -51.93 -0.32 0.35 16 34 H 0.08 0.65 8.14 -51.93 -0.42 0.23 16 35 H 0.08 0.64 8.14 -51.93 -0.42 0.22 16 36 H 0.09 0.57 8.14 -51.93 -0.42 0.15 16 37 H 0.11 1.51 5.88 -51.93 -0.31 1.20 16 38 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 39 H 0.41 6.66 8.29 -40.82 -0.34 6.32 16 40 H 0.18 4.33 5.92 -52.49 -0.31 4.02 16 41 H 0.28 6.92 8.31 -40.82 -0.34 6.58 16 42 H 0.15 2.90 8.06 -52.48 -0.42 2.48 16 LS Contribution 347.24 15.07 5.23 5.23 Total: -1.00 -32.26 347.24 -5.64 -37.90 By element: Atomic # 1 Polarization: 18.34 SS G_CDS: -4.43 Total: 13.91 kcal Atomic # 6 Polarization: 5.37 SS G_CDS: -1.66 Total: 3.71 kcal Atomic # 7 Polarization: -50.54 SS G_CDS: 0.55 Total: -49.99 kcal Atomic # 8 Polarization: -23.99 SS G_CDS: -0.31 Total: -24.29 kcal Atomic # 14 Polarization: 18.56 SS G_CDS: -5.02 Total: 13.54 kcal Total LS contribution 5.23 Total: 5.23 kcal Total: -32.26 -5.64 -37.90 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001327353126.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.195 kcal (2) G-P(sol) polarization free energy of solvation -32.257 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.062 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.645 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.902 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.707 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds