Wall clock time and date at job start Fri Apr 10 2020 18:27:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09006 * 109.47068 * 2 1 4 4 O 1.42902 * 109.47290 * 120.00258 * 2 1 3 5 5 C 1.52998 * 109.46741 * 240.00199 * 2 1 3 6 6 H 1.09007 * 109.99313 * 174.80015 * 5 2 1 7 7 C 1.54319 * 109.88301 * 295.89309 * 5 2 1 8 8 C 1.55158 * 103.10012 * 141.70081 * 7 5 2 9 9 C 1.54909 * 101.58257 * 324.41294 * 8 7 5 10 10 N 1.47418 * 104.83066 * 37.00754 * 9 8 7 11 11 C 1.34780 * 125.64806 * 155.91025 * 10 9 8 12 12 O 1.21363 * 120.00160 * 175.10130 * 11 10 9 13 13 C 1.49303 * 120.00004 * 355.10678 * 11 10 9 14 14 O 1.21415 * 120.00039 * 359.97438 * 13 11 10 15 15 N 1.34779 * 120.00586 * 179.97438 * 13 11 10 16 16 C 1.40290 * 120.00395 * 179.97438 * 15 13 11 17 17 C 1.40722 * 126.10178 * 359.69177 * 16 15 13 18 18 N 1.30875 * 108.37759 * 179.85274 * 17 16 15 19 19 N 1.40066 * 108.43323 * 0.40542 * 18 17 16 20 20 C 1.37289 * 126.05275 * 179.73788 * 19 18 17 21 21 H 1.07997 * 120.00059 * 180.02562 * 20 19 18 22 22 C 1.39009 * 120.00146 * 359.97438 * 20 19 18 23 23 N 1.31285 * 120.00119 * 0.02562 * 22 20 19 24 24 Si 1.86807 * 120.00236 * 179.97438 * 22 20 19 25 25 H 1.48499 * 109.46606 * 60.00211 * 24 22 20 26 26 H 1.48493 * 109.47069 * 180.02562 * 24 22 20 27 27 H 1.48499 * 109.47016 * 300.00668 * 24 22 20 28 28 C 1.35791 * 126.09951 * 180.02562 * 16 15 13 29 29 H 1.09001 * 109.47351 * 65.56840 * 1 2 3 30 30 H 1.08996 * 109.47075 * 185.57812 * 1 2 3 31 31 H 1.09000 * 109.46842 * 305.57245 * 1 2 3 32 32 H 0.96705 * 113.99593 * 299.99573 * 4 2 1 33 33 H 1.09001 * 110.71832 * 23.25405 * 7 5 2 34 34 H 1.09003 * 110.72498 * 260.15822 * 7 5 2 35 35 H 1.09007 * 111.00441 * 82.48727 * 8 7 5 36 36 H 1.09002 * 111.00706 * 206.33316 * 8 7 5 37 37 H 1.09001 * 110.36657 * 155.84363 * 9 8 7 38 38 H 1.08995 * 110.36196 * 278.16669 * 9 8 7 39 39 H 0.97002 * 119.99645 * 0.02562 * 15 13 11 40 40 H 1.07998 * 125.81061 * 359.97438 * 17 16 15 41 41 H 0.96994 * 119.99876 * 179.97438 * 23 22 20 42 42 H 1.08005 * 126.25118 * 359.94063 * 28 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 8 2.0064 -0.6737 1.1668 5 6 2.0399 -0.7212 -1.2493 6 1 3.1260 -0.6465 -1.3056 7 6 1.6173 -2.2048 -1.2080 8 6 1.2644 -2.5112 -2.6875 9 6 0.6393 -1.1689 -3.1426 10 7 1.4314 -0.1320 -2.4566 11 6 1.5759 1.1444 -2.8647 12 8 2.1807 1.9377 -2.1735 13 6 0.9917 1.5824 -4.1670 14 8 0.3870 0.7886 -4.8587 15 7 1.1357 2.8588 -4.5750 16 6 0.5873 3.2702 -5.7990 17 6 -0.1286 2.4610 -6.7006 18 7 -0.4814 3.1961 -7.7243 19 7 0.0005 4.4958 -7.5233 20 6 -0.1599 5.5582 -8.3779 21 1 0.2549 6.5226 -8.1244 22 6 -0.8553 5.3924 -9.5701 23 7 -1.3591 4.2200 -9.8786 24 14 -1.0741 6.8381 -10.7327 25 1 0.2582 7.3352 -11.1606 26 1 -1.8466 6.4029 -11.9238 27 1 -1.8082 7.9257 -10.0373 28 6 0.6579 4.5189 -6.3280 29 1 -0.3634 0.4250 -0.9356 30 1 -0.3633 -1.0228 0.0999 31 1 -0.3633 0.5978 0.8359 32 1 1.7211 -0.2701 1.9980 33 1 0.7456 -2.3398 -0.5677 34 1 2.4427 -2.8318 -0.8706 35 1 2.1609 -2.7400 -3.2638 36 1 0.5400 -3.3229 -2.7564 37 1 0.7243 -1.0580 -4.2236 38 1 -0.4051 -1.1136 -2.8356 39 1 1.6191 3.4929 -4.0226 40 1 -0.3508 1.4123 -6.5692 41 1 -1.8446 4.1044 -10.7103 42 1 1.1448 5.3743 -5.8833 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001327353126.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:27:49 Heat of formation + Delta-G solvation = -43.895850 kcal Electronic energy + Delta-G solvation = -27310.651604 eV Core-core repulsion = 23292.406111 eV Total energy + Delta-G solvation = -4018.245493 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 322.147 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -42.21128 -41.46496 -40.04705 -38.87778 -37.52977 -36.07361 -35.02297 -32.72231 -32.31140 -32.22632 -29.90596 -29.15729 -27.33960 -26.13278 -24.46041 -23.17575 -22.91984 -21.92633 -21.30075 -20.31542 -19.39935 -18.61694 -18.17736 -17.88721 -17.48613 -17.42638 -16.81192 -16.62829 -16.01905 -15.68296 -15.58942 -15.29914 -15.05840 -14.91194 -14.60656 -14.30454 -14.08241 -13.92186 -13.50851 -13.38594 -13.26141 -12.96128 -12.89463 -12.85922 -12.75860 -12.51233 -12.13604 -11.99743 -11.92920 -11.81046 -11.56133 -11.06029 -10.89145 -10.87193 -10.44997 -10.14628 -9.91272 -8.63140 -8.49220 -6.27023 0.23665 1.12785 1.29775 1.40984 1.56772 1.71452 2.00478 2.10115 2.39196 2.51348 2.81808 3.07171 3.28969 3.42165 3.58214 3.62036 3.88976 4.02526 4.14721 4.27760 4.38561 4.40425 4.51266 4.55008 4.78857 4.83201 4.87761 4.92667 4.95396 4.97488 4.99243 5.10798 5.11748 5.20677 5.26089 5.34420 5.39094 5.90371 6.02767 6.18937 6.36164 6.63977 6.72070 6.81323 7.04857 7.40325 7.62249 8.49737 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.033825 B = 0.002533 C = 0.002424 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 827.593178 B =11049.399998 C =11548.564743 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C 0.097 3.903 3 H 0.048 0.952 4 O -0.568 6.568 5 C 0.135 3.865 6 H 0.076 0.924 7 C -0.110 4.110 8 C -0.127 4.127 9 C 0.086 3.914 10 N -0.577 5.577 11 C 0.532 3.468 12 O -0.541 6.541 13 C 0.489 3.511 14 O -0.531 6.531 15 N -0.583 5.583 16 C -0.056 4.056 17 C -0.046 4.046 18 N -0.307 5.307 19 N -0.163 5.163 20 C -0.354 4.354 21 H 0.141 0.859 22 C -0.004 4.004 23 N -0.820 5.820 24 Si 1.019 2.981 25 H -0.254 1.254 26 H -0.277 1.277 27 H -0.254 1.254 28 C -0.076 4.076 29 H 0.045 0.955 30 H 0.080 0.920 31 H 0.069 0.931 32 H 0.397 0.603 33 H 0.091 0.909 34 H 0.097 0.903 35 H 0.079 0.921 36 H 0.110 0.890 37 H 0.091 0.909 38 H 0.078 0.922 39 H 0.422 0.578 40 H 0.178 0.822 41 H 0.278 0.722 42 H 0.187 0.813 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.504 -9.307 17.908 20.678 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.236 4.236 2 C 0.037 3.963 3 H 0.066 0.934 4 O -0.376 6.376 5 C 0.033 3.967 6 H 0.095 0.905 7 C -0.147 4.147 8 C -0.165 4.165 9 C -0.035 4.035 10 N -0.311 5.311 11 C 0.315 3.685 12 O -0.419 6.419 13 C 0.270 3.730 14 O -0.409 6.409 15 N -0.228 5.228 16 C -0.162 4.162 17 C -0.221 4.221 18 N -0.139 5.139 19 N 0.069 4.931 20 C -0.485 4.485 21 H 0.158 0.842 22 C -0.216 4.216 23 N -0.448 5.448 24 Si 0.838 3.162 25 H -0.178 1.178 26 H -0.202 1.202 27 H -0.178 1.178 28 C -0.227 4.227 29 H 0.064 0.936 30 H 0.098 0.902 31 H 0.088 0.912 32 H 0.248 0.752 33 H 0.110 0.890 34 H 0.116 0.884 35 H 0.097 0.903 36 H 0.129 0.871 37 H 0.109 0.891 38 H 0.096 0.904 39 H 0.259 0.741 40 H 0.194 0.806 41 H 0.088 0.912 42 H 0.204 0.796 Dipole moment (debyes) X Y Z Total from point charges 3.947 -9.867 16.058 19.256 hybrid contribution 0.204 1.310 0.763 1.530 sum 4.151 -8.556 16.820 19.323 Atomic orbital electron populations 1.22447 0.95422 1.03506 1.02190 1.21808 0.93718 0.94995 0.85773 0.93353 1.86381 1.77309 1.57584 1.16299 1.21760 0.97631 0.94712 0.82608 0.90550 1.22636 1.03573 0.91446 0.97093 1.22883 1.02219 0.95850 0.95509 1.22903 0.95073 0.86415 0.99150 1.48394 1.48685 1.08754 1.25269 1.19474 0.80997 0.82306 0.85739 1.90721 1.42774 1.52296 1.56081 1.20083 0.82675 0.82833 0.87360 1.90592 1.41891 1.52187 1.56242 1.42074 1.51822 1.10432 1.18424 1.17275 1.13486 0.93999 0.91449 1.24256 1.03704 1.00768 0.93412 1.78160 1.24132 0.89090 1.22505 1.44827 1.29543 1.07127 1.11569 1.20611 1.37980 0.89500 1.00429 0.84176 1.26873 0.94198 1.01130 0.99440 1.70365 1.26880 1.24679 1.22848 0.84651 0.79551 0.75907 0.76113 1.17796 1.20151 1.17788 1.21986 1.10290 0.98758 0.91668 0.93589 0.90165 0.91189 0.75230 0.89015 0.88414 0.90263 0.87147 0.89108 0.90401 0.74079 0.80571 0.91205 0.79650 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.06 9.12 71.98 0.66 -2.40 16 2 C 0.10 1.87 3.25 30.59 0.10 1.97 16 3 H 0.05 1.16 6.93 -2.38 -0.02 1.14 16 4 O -0.57 -8.88 12.86 -148.98 -1.92 -10.79 16 5 C 0.14 2.76 2.98 45.25 0.13 2.89 16 6 H 0.08 1.70 8.14 -2.38 -0.02 1.68 16 7 C -0.11 -1.55 5.86 31.78 0.19 -1.36 16 8 C -0.13 -1.80 7.09 31.99 0.23 -1.58 16 9 C 0.09 1.86 6.24 86.86 0.54 2.40 16 10 N -0.58 -14.31 2.01 -788.72 -1.59 -15.90 16 11 C 0.53 16.41 7.59 87.22 0.66 17.07 16 12 O -0.54 -17.79 15.46 -3.29 -0.05 -17.84 16 13 C 0.49 17.63 7.82 87.22 0.68 18.31 16 14 O -0.53 -21.02 10.85 -3.45 -0.04 -21.06 16 15 N -0.58 -21.75 5.45 -305.32 -1.66 -23.42 16 16 C -0.06 -2.57 6.90 37.83 0.26 -2.31 16 17 C -0.05 -2.42 10.85 85.44 0.93 -1.50 16 18 N -0.31 -18.11 10.39 -56.44 -0.59 -18.69 16 19 N -0.16 -8.94 3.73 -189.98 -0.71 -9.65 16 20 C -0.35 -18.53 10.25 84.02 0.86 -17.67 16 21 H 0.14 6.36 7.83 -2.91 -0.02 6.34 16 22 C 0.00 -0.21 5.50 84.96 0.47 0.26 16 23 N -0.82 -46.42 11.81 21.67 0.26 -46.17 16 24 Si 1.02 37.95 29.55 68.60 2.03 39.97 16 25 H -0.25 -8.87 7.11 99.48 0.71 -8.16 16 26 H -0.28 -10.18 7.11 99.48 0.71 -9.47 16 27 H -0.25 -8.86 7.11 99.48 0.71 -8.15 16 28 C -0.08 -3.54 11.50 83.41 0.96 -2.58 16 29 H 0.05 1.00 7.16 -2.39 -0.02 0.98 16 30 H 0.08 1.15 6.49 -2.39 -0.02 1.13 16 31 H 0.07 1.02 8.14 -2.39 -0.02 1.00 16 32 H 0.40 3.07 9.08 -74.05 -0.67 2.40 16 33 H 0.09 1.16 6.09 -2.39 -0.01 1.14 16 34 H 0.10 1.18 8.14 -2.39 -0.02 1.16 16 35 H 0.08 1.13 8.14 -2.38 -0.02 1.11 16 36 H 0.11 1.10 8.14 -2.39 -0.02 1.08 16 37 H 0.09 2.43 5.88 -2.39 -0.01 2.41 16 38 H 0.08 1.61 8.14 -2.39 -0.02 1.59 16 39 H 0.42 13.42 8.29 -92.71 -0.77 12.65 16 40 H 0.18 9.04 5.92 -2.91 -0.02 9.03 16 41 H 0.28 14.47 8.31 -92.71 -0.77 13.70 16 42 H 0.19 6.94 8.06 -2.91 -0.02 6.91 16 Total: -1.00 -72.44 347.24 2.05 -70.40 By element: Atomic # 1 Polarization: 40.00 SS G_CDS: -0.35 Total: 39.65 kcal Atomic # 6 Polarization: 6.84 SS G_CDS: 6.66 Total: 13.50 kcal Atomic # 7 Polarization: -109.54 SS G_CDS: -4.29 Total: -113.83 kcal Atomic # 8 Polarization: -47.69 SS G_CDS: -2.00 Total: -49.69 kcal Atomic # 14 Polarization: 37.95 SS G_CDS: 2.03 Total: 39.97 kcal Total: -72.44 2.05 -70.40 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001327353126.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.500 kcal (2) G-P(sol) polarization free energy of solvation -72.443 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.944 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.048 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.395 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.896 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds