Wall clock time and date at job start Fri Apr 10 2020 18:26:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31525 * 1 3 3 Si 1.86794 * 119.99896 * 2 1 4 4 H 1.48504 * 109.47107 * 179.97438 * 3 2 1 5 5 H 1.48502 * 109.47192 * 299.99299 * 3 2 1 6 6 H 1.48495 * 109.47648 * 59.99878 * 3 2 1 7 7 C 1.37879 * 119.99562 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99185 * 180.02562 * 7 2 1 9 9 C 1.50693 * 120.00395 * 0.02562 * 7 2 1 10 10 N 1.46496 * 109.47193 * 179.97438 * 9 7 2 11 11 C 1.46504 * 120.00259 * 90.00245 * 10 9 7 12 12 C 1.50707 * 109.46520 * 270.00173 * 11 10 9 13 13 C 1.38227 * 119.62024 * 94.97709 * 12 11 10 14 14 C 1.38627 * 119.15702 * 179.78495 * 13 12 11 15 15 C 1.38669 * 118.42389 * 0.47826 * 14 13 12 16 16 C 1.38186 * 119.16143 * 359.49762 * 15 14 13 17 17 N 1.31856 * 119.61172 * 274.99461 * 12 11 10 18 18 C 1.34774 * 120.00232 * 269.99704 * 10 9 7 19 19 O 1.21696 * 120.00639 * 180.02562 * 18 10 9 20 20 C 1.46435 * 119.99784 * 359.97438 * 18 10 9 21 21 C 1.34809 * 119.99993 * 179.97438 * 20 18 10 22 22 C 1.47209 * 119.99691 * 180.02562 * 21 20 18 23 23 C 1.39832 * 120.17316 * 359.72770 * 22 21 20 24 24 C 1.37891 * 119.82846 * 179.74717 * 23 22 21 25 25 C 1.38404 * 120.16563 * 0.55136 * 24 23 22 26 26 C 1.38396 * 120.34701 * 359.69654 * 25 24 23 27 27 C 1.37890 * 120.17085 * 0.02730 * 26 25 24 28 28 H 0.96998 * 119.99878 * 0.02562 * 1 2 3 29 29 H 1.09003 * 109.47239 * 59.99385 * 9 7 2 30 30 H 1.09003 * 109.46946 * 299.99978 * 9 7 2 31 31 H 1.08993 * 109.47601 * 149.99751 * 11 10 9 32 32 H 1.08997 * 109.47191 * 29.99284 * 11 10 9 33 33 H 1.07998 * 120.41916 * 359.97438 * 13 12 11 34 34 H 1.08008 * 120.78688 * 180.22921 * 14 13 12 35 35 H 1.08002 * 120.42244 * 179.78279 * 15 14 13 36 36 H 1.07996 * 119.61757 * 180.25243 * 16 15 14 37 37 H 1.07997 * 119.99832 * 0.02562 * 20 18 10 38 38 H 1.07997 * 120.00175 * 0.02562 * 21 20 18 39 39 H 1.08006 * 120.08711 * 0.02562 * 23 22 21 40 40 H 1.08000 * 119.91333 * 180.27332 * 24 23 22 41 41 H 1.08006 * 119.82302 * 179.72553 * 25 24 23 42 42 H 1.08005 * 119.91554 * 180.02562 * 26 25 24 43 43 H 1.08006 * 120.08485 * 180.02562 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3153 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3464 0.0006 5 1 1.8906 2.3963 -1.2126 6 1 1.8905 2.3965 1.2124 7 6 2.0046 -1.1941 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2511 -2.4992 0.0005 10 7 2.2030 -3.6127 0.0005 11 6 2.6790 -4.1695 1.2693 12 6 3.9222 -3.4370 1.7043 13 6 3.8176 -2.3770 2.5852 14 6 4.9678 -1.7129 2.9824 15 6 6.1846 -2.1353 2.4687 16 6 6.2112 -3.2033 1.5923 17 7 5.0971 -3.8147 1.2398 18 6 2.6409 -4.1249 -1.1666 19 8 3.4313 -5.0502 -1.1667 20 6 2.1647 -3.5688 -2.4348 21 6 2.6030 -4.0809 -3.6023 22 6 2.1246 -3.5214 -4.8771 23 6 1.2112 -2.4627 -4.8813 24 6 0.7718 -1.9406 -6.0795 25 6 1.2238 -2.4694 -7.2760 26 6 2.1239 -3.5207 -7.2802 27 6 2.5769 -4.0498 -6.0902 28 1 -0.4850 0.8400 -0.0004 29 1 0.6247 -2.5571 -0.8896 30 1 0.6241 -2.5567 0.8903 31 1 2.9073 -5.2273 1.1390 32 1 1.9057 -4.0556 2.0289 33 1 2.8524 -2.0720 2.9615 34 1 4.9169 -0.8836 3.6725 35 1 7.1004 -1.6388 2.7536 36 1 7.1553 -3.5410 1.1910 37 1 1.4629 -2.7480 -2.4347 38 1 3.3051 -4.9015 -3.6023 39 1 0.8542 -2.0519 -3.9483 40 1 0.0697 -1.1199 -6.0843 41 1 0.8726 -2.0591 -8.2113 42 1 2.4724 -3.9277 -8.2179 43 1 3.2797 -4.8700 -6.0950 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000069769535.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:26:08 Heat of formation + Delta-G solvation = 45.693437 kcal Electronic energy + Delta-G solvation = -26171.384024 eV Core-core repulsion = 22567.872677 eV Total energy + Delta-G solvation = -3603.511347 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 322.142 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -39.87790 -39.13467 -38.54883 -35.14786 -33.72296 -32.76331 -31.97421 -31.29879 -30.84158 -29.30401 -27.63421 -26.20566 -23.75689 -23.12144 -22.81280 -22.37814 -21.69455 -20.11131 -17.86692 -17.21542 -16.73548 -16.36874 -16.18222 -15.69712 -15.42893 -15.09293 -14.93605 -14.57482 -14.27979 -13.94036 -13.39758 -13.28732 -13.19175 -12.94059 -12.79713 -12.62240 -12.51241 -12.34193 -11.86538 -11.57713 -11.33306 -11.31573 -11.05930 -10.98111 -10.83319 -10.60877 -10.18800 -10.00185 -9.77761 -9.42214 -9.12099 -8.95269 -8.83213 -8.64605 -8.47371 -7.99515 -7.68527 -6.21988 -4.27613 0.89602 1.53015 1.54190 1.76290 2.39649 3.17001 3.26697 3.32120 3.79824 3.94473 4.23961 4.29779 4.44566 4.78088 4.97168 4.98020 5.07020 5.11530 5.18563 5.20941 5.23871 5.46120 5.51760 5.57298 5.60639 5.70072 5.77852 5.92332 5.97320 6.09314 6.17466 6.18619 6.23991 6.43420 6.52701 6.55594 6.62009 6.64190 6.68019 6.83534 6.98491 7.11022 7.13591 7.16377 7.51641 7.74160 8.02436 8.30253 8.52708 8.78955 9.04813 9.40171 10.84507 Molecular weight = 322.14amu Principal moments of inertia in cm(-1) A = 0.010483 B = 0.004413 C = 0.003549 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2670.347861 B = 6343.625564 C = 7886.944250 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.891 5.891 2 C 0.067 3.933 3 Si 0.888 3.112 4 H -0.273 1.273 5 H -0.282 1.282 6 H -0.282 1.282 7 C -0.526 4.526 8 H 0.059 0.941 9 C 0.235 3.765 10 N -0.587 5.587 11 C 0.171 3.829 12 C 0.124 3.876 13 C -0.133 4.133 14 C -0.085 4.085 15 C -0.181 4.181 16 C 0.087 3.913 17 N -0.460 5.460 18 C 0.545 3.455 19 O -0.555 6.555 20 C -0.165 4.165 21 C -0.066 4.066 22 C -0.056 4.056 23 C -0.103 4.103 24 C -0.120 4.120 25 C -0.123 4.123 26 C -0.126 4.126 27 C -0.107 4.107 28 H 0.264 0.736 29 H 0.041 0.959 30 H 0.037 0.963 31 H 0.089 0.911 32 H 0.088 0.912 33 H 0.137 0.863 34 H 0.128 0.872 35 H 0.125 0.875 36 H 0.147 0.853 37 H 0.142 0.858 38 H 0.129 0.871 39 H 0.135 0.865 40 H 0.123 0.877 41 H 0.118 0.882 42 H 0.120 0.880 43 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.662 -4.028 -3.833 6.658 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.530 5.530 2 C -0.136 4.136 3 Si 0.716 3.284 4 H -0.198 1.198 5 H -0.208 1.208 6 H -0.208 1.208 7 C -0.565 4.565 8 H 0.078 0.922 9 C 0.115 3.885 10 N -0.317 5.317 11 C 0.047 3.953 12 C -0.015 4.015 13 C -0.153 4.153 14 C -0.111 4.111 15 C -0.202 4.202 16 C -0.071 4.071 17 N -0.170 5.170 18 C 0.335 3.665 19 O -0.436 6.436 20 C -0.185 4.185 21 C -0.086 4.086 22 C -0.056 4.056 23 C -0.121 4.121 24 C -0.138 4.138 25 C -0.141 4.141 26 C -0.144 4.144 27 C -0.125 4.125 28 H 0.074 0.926 29 H 0.059 0.941 30 H 0.055 0.945 31 H 0.107 0.893 32 H 0.106 0.894 33 H 0.154 0.846 34 H 0.146 0.854 35 H 0.143 0.857 36 H 0.164 0.836 37 H 0.159 0.841 38 H 0.147 0.853 39 H 0.152 0.848 40 H 0.141 0.859 41 H 0.136 0.864 42 H 0.138 0.862 43 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges 3.910 -5.084 -4.384 7.769 hybrid contribution 0.446 2.253 0.616 2.378 sum 4.356 -2.831 -3.768 6.417 Atomic orbital electron populations 1.69926 1.05838 1.27095 1.50157 1.24877 0.94745 0.98990 0.94944 0.86581 0.80342 0.83706 0.77814 1.19757 1.20809 1.20846 1.21499 0.93535 0.90253 1.51219 0.92227 1.19539 0.87410 0.82753 0.98782 1.48055 1.44791 1.35198 1.03684 1.20104 0.91115 0.97482 0.86628 1.21644 0.93637 0.93977 0.92224 1.21993 0.99508 0.95644 0.98164 1.21498 0.92565 0.98517 0.98503 1.22032 0.98587 0.99271 1.00270 1.22643 0.96701 0.92942 0.94782 1.67569 0.98179 1.29568 1.21650 1.18240 0.80963 0.82647 0.84624 1.90742 1.34947 1.29966 1.87901 1.23390 1.01819 1.01193 0.92114 1.22197 0.97691 0.98293 0.90426 1.19114 0.97197 0.96235 0.93014 1.21637 0.96107 0.95343 0.98975 1.21122 1.00255 1.00046 0.92349 1.21216 0.97976 0.96983 0.97939 1.21019 0.98350 0.97318 0.97762 1.21327 0.99722 0.99777 0.91689 0.92624 0.94133 0.94458 0.89260 0.89404 0.84553 0.85439 0.85662 0.83613 0.84099 0.85272 0.84765 0.85893 0.86375 0.86218 0.85838 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -23.54 13.29 55.43 0.74 -22.80 16 2 C 0.07 1.71 5.46 -17.81 -0.10 1.62 16 3 Si 0.89 20.37 29.54 -169.99 -5.02 15.35 16 4 H -0.27 -6.39 7.11 56.52 0.40 -5.99 16 5 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 6 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 7 C -0.53 -13.15 9.23 -34.44 -0.32 -13.47 16 8 H 0.06 1.60 7.81 -52.49 -0.41 1.19 16 9 C 0.23 5.34 4.92 -5.20 -0.03 5.31 16 10 N -0.59 -12.38 2.44 -178.08 -0.43 -12.81 16 11 C 0.17 3.22 5.76 -5.19 -0.03 3.19 16 12 C 0.12 2.39 6.36 -82.58 -0.53 1.86 16 13 C -0.13 -2.34 9.57 -39.44 -0.38 -2.71 16 14 C -0.08 -1.32 10.18 -39.28 -0.40 -1.72 16 15 C -0.18 -2.70 10.11 -39.44 -0.40 -3.09 16 16 C 0.09 1.44 11.18 -17.55 -0.20 1.25 16 17 N -0.46 -9.13 10.27 -9.47 -0.10 -9.23 16 18 C 0.54 11.82 7.60 -12.96 -0.10 11.72 16 19 O -0.55 -12.95 15.81 5.19 0.08 -12.87 16 20 C -0.16 -3.23 8.61 -37.50 -0.32 -3.55 16 21 C -0.07 -1.15 9.46 -37.16 -0.35 -1.50 16 22 C -0.06 -0.87 5.87 -105.06 -0.62 -1.48 16 23 C -0.10 -1.60 9.41 -39.11 -0.37 -1.97 16 24 C -0.12 -1.61 10.03 -39.65 -0.40 -2.00 16 25 C -0.12 -1.46 10.04 -39.46 -0.40 -1.86 16 26 C -0.13 -1.49 10.03 -39.65 -0.40 -1.89 16 27 C -0.11 -1.43 9.80 -39.11 -0.38 -1.81 16 28 H 0.26 6.68 8.31 -40.82 -0.34 6.35 16 29 H 0.04 0.95 6.09 -51.93 -0.32 0.63 16 30 H 0.04 0.87 7.90 -51.93 -0.41 0.46 16 31 H 0.09 1.69 7.42 -51.93 -0.39 1.30 16 32 H 0.09 1.43 7.79 -51.93 -0.40 1.02 16 33 H 0.14 2.30 8.06 -52.49 -0.42 1.87 16 34 H 0.13 1.65 8.06 -52.48 -0.42 1.23 16 35 H 0.13 1.45 8.06 -52.49 -0.42 1.02 16 36 H 0.15 2.01 8.06 -52.49 -0.42 1.59 16 37 H 0.14 2.82 4.22 -52.49 -0.22 2.60 16 38 H 0.13 2.21 7.52 -52.49 -0.39 1.81 16 39 H 0.13 2.20 6.17 -52.48 -0.32 1.88 16 40 H 0.12 1.43 8.06 -52.49 -0.42 1.01 16 41 H 0.12 1.09 8.06 -52.48 -0.42 0.67 16 42 H 0.12 1.09 8.06 -52.48 -0.42 0.66 16 43 H 0.12 1.41 8.06 -52.48 -0.42 0.99 16 LS Contribution 373.98 15.07 5.64 5.64 Total: -1.00 -30.44 373.98 -10.18 -40.62 By element: Atomic # 1 Polarization: 13.60 SS G_CDS: -5.38 Total: 8.22 kcal Atomic # 6 Polarization: -6.41 SS G_CDS: -5.70 Total: -12.11 kcal Atomic # 7 Polarization: -45.05 SS G_CDS: 0.20 Total: -44.84 kcal Atomic # 8 Polarization: -12.95 SS G_CDS: 0.08 Total: -12.87 kcal Atomic # 14 Polarization: 20.37 SS G_CDS: -5.02 Total: 15.35 kcal Total LS contribution 5.64 Total: 5.64 kcal Total: -30.44 -10.18 -40.62 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000069769535.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.314 kcal (2) G-P(sol) polarization free energy of solvation -30.438 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 55.876 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.183 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.621 kcal (6) G-S(sol) free energy of system = (1) + (5) 45.693 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds