Wall clock time and date at job start Fri Apr 10 2020 18:26:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31525 * 1 3 3 Si 1.86794 * 119.99896 * 2 1 4 4 H 1.48504 * 109.47107 * 179.97438 * 3 2 1 5 5 H 1.48502 * 109.47192 * 299.99299 * 3 2 1 6 6 H 1.48495 * 109.47648 * 59.99878 * 3 2 1 7 7 C 1.37879 * 119.99562 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99185 * 180.02562 * 7 2 1 9 9 C 1.50693 * 120.00395 * 0.02562 * 7 2 1 10 10 N 1.46496 * 109.47193 * 179.97438 * 9 7 2 11 11 C 1.46504 * 120.00259 * 90.00245 * 10 9 7 12 12 C 1.50707 * 109.46520 * 270.00173 * 11 10 9 13 13 C 1.38227 * 119.62024 * 94.97709 * 12 11 10 14 14 C 1.38627 * 119.15702 * 179.78495 * 13 12 11 15 15 C 1.38669 * 118.42389 * 0.47826 * 14 13 12 16 16 C 1.38186 * 119.16143 * 359.49762 * 15 14 13 17 17 N 1.31856 * 119.61172 * 274.99461 * 12 11 10 18 18 C 1.34774 * 120.00232 * 269.99704 * 10 9 7 19 19 O 1.21696 * 120.00639 * 180.02562 * 18 10 9 20 20 C 1.46435 * 119.99784 * 359.97438 * 18 10 9 21 21 C 1.34809 * 119.99993 * 179.97438 * 20 18 10 22 22 C 1.47209 * 119.99691 * 180.02562 * 21 20 18 23 23 C 1.39832 * 120.17316 * 359.72770 * 22 21 20 24 24 C 1.37891 * 119.82846 * 179.74717 * 23 22 21 25 25 C 1.38404 * 120.16563 * 0.55136 * 24 23 22 26 26 C 1.38396 * 120.34701 * 359.69654 * 25 24 23 27 27 C 1.37890 * 120.17085 * 0.02730 * 26 25 24 28 28 H 0.96998 * 119.99878 * 0.02562 * 1 2 3 29 29 H 1.09003 * 109.47239 * 59.99385 * 9 7 2 30 30 H 1.09003 * 109.46946 * 299.99978 * 9 7 2 31 31 H 1.08993 * 109.47601 * 149.99751 * 11 10 9 32 32 H 1.08997 * 109.47191 * 29.99284 * 11 10 9 33 33 H 1.07998 * 120.41916 * 359.97438 * 13 12 11 34 34 H 1.08008 * 120.78688 * 180.22921 * 14 13 12 35 35 H 1.08002 * 120.42244 * 179.78279 * 15 14 13 36 36 H 1.07996 * 119.61757 * 180.25243 * 16 15 14 37 37 H 1.07997 * 119.99832 * 0.02562 * 20 18 10 38 38 H 1.07997 * 120.00175 * 0.02562 * 21 20 18 39 39 H 1.08006 * 120.08711 * 0.02562 * 23 22 21 40 40 H 1.08000 * 119.91333 * 180.27332 * 24 23 22 41 41 H 1.08006 * 119.82302 * 179.72553 * 25 24 23 42 42 H 1.08005 * 119.91554 * 180.02562 * 26 25 24 43 43 H 1.08006 * 120.08485 * 180.02562 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3153 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3464 0.0006 5 1 1.8906 2.3963 -1.2126 6 1 1.8905 2.3965 1.2124 7 6 2.0046 -1.1941 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2511 -2.4992 0.0005 10 7 2.2030 -3.6127 0.0005 11 6 2.6790 -4.1695 1.2693 12 6 3.9222 -3.4370 1.7043 13 6 3.8176 -2.3770 2.5852 14 6 4.9678 -1.7129 2.9824 15 6 6.1846 -2.1353 2.4687 16 6 6.2112 -3.2033 1.5923 17 7 5.0971 -3.8147 1.2398 18 6 2.6409 -4.1249 -1.1666 19 8 3.4313 -5.0502 -1.1667 20 6 2.1647 -3.5688 -2.4348 21 6 2.6030 -4.0809 -3.6023 22 6 2.1246 -3.5214 -4.8771 23 6 1.2112 -2.4627 -4.8813 24 6 0.7718 -1.9406 -6.0795 25 6 1.2238 -2.4694 -7.2760 26 6 2.1239 -3.5207 -7.2802 27 6 2.5769 -4.0498 -6.0902 28 1 -0.4850 0.8400 -0.0004 29 1 0.6247 -2.5571 -0.8896 30 1 0.6241 -2.5567 0.8903 31 1 2.9073 -5.2273 1.1390 32 1 1.9057 -4.0556 2.0289 33 1 2.8524 -2.0720 2.9615 34 1 4.9169 -0.8836 3.6725 35 1 7.1004 -1.6388 2.7536 36 1 7.1553 -3.5410 1.1910 37 1 1.4629 -2.7480 -2.4347 38 1 3.3051 -4.9015 -3.6023 39 1 0.8542 -2.0519 -3.9483 40 1 0.0697 -1.1199 -6.0843 41 1 0.8726 -2.0591 -8.2113 42 1 2.4724 -3.9277 -8.2179 43 1 3.2797 -4.8700 -6.0950 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000069769535.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:26:06 Heat of formation + Delta-G solvation = 30.956168 kcal Electronic energy + Delta-G solvation = -26172.023080 eV Core-core repulsion = 22567.872677 eV Total energy + Delta-G solvation = -3604.150403 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 322.142 amu Computer time = 1.40 seconds Orbital eigenvalues (eV) -41.30243 -40.45645 -39.86593 -36.85082 -35.09937 -34.58332 -33.32197 -32.71647 -31.89193 -30.55113 -29.42325 -27.72252 -25.24856 -24.65457 -24.25098 -23.50785 -22.97114 -21.42828 -19.44863 -18.64684 -18.57404 -17.73133 -17.49076 -17.10200 -16.88597 -16.51852 -16.36535 -15.96515 -15.62542 -15.47535 -14.79752 -14.58222 -14.30425 -14.25247 -14.20195 -14.04248 -13.94282 -13.81840 -13.55475 -13.12482 -12.96667 -12.79333 -12.64323 -12.47192 -12.13293 -12.07975 -11.78204 -11.70362 -11.27796 -10.87658 -10.70419 -10.56194 -10.32177 -9.87778 -9.86662 -9.50965 -9.13319 -8.19218 -6.30155 -0.37509 0.22641 0.47591 0.49709 1.09454 1.34124 1.39271 1.48288 2.23640 2.42521 2.48119 2.99812 3.06182 3.11725 3.46878 3.63422 3.86305 3.89984 4.04723 4.09553 4.15391 4.24590 4.28631 4.32397 4.40116 4.51282 4.55801 4.58864 4.63460 4.81669 4.87663 4.92991 5.00585 5.08041 5.17762 5.24074 5.28178 5.33420 5.35273 5.56034 5.59608 5.68652 5.75377 5.84253 5.88353 6.07438 6.07932 6.54906 6.82567 7.19934 7.31945 7.43586 8.86561 Molecular weight = 322.14amu Principal moments of inertia in cm(-1) A = 0.010483 B = 0.004413 C = 0.003549 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2670.347861 B = 6343.625564 C = 7886.944250 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.916 5.916 2 C 0.031 3.969 3 Si 0.941 3.059 4 H -0.280 1.280 5 H -0.281 1.281 6 H -0.273 1.273 7 C -0.521 4.521 8 H 0.040 0.960 9 C 0.251 3.749 10 N -0.588 5.588 11 C 0.168 3.832 12 C 0.102 3.898 13 C -0.147 4.147 14 C -0.088 4.088 15 C -0.170 4.170 16 C 0.072 3.928 17 N -0.498 5.498 18 C 0.541 3.459 19 O -0.580 6.580 20 C -0.205 4.205 21 C -0.032 4.032 22 C -0.087 4.087 23 C -0.120 4.120 24 C -0.131 4.131 25 C -0.110 4.110 26 C -0.123 4.123 27 C -0.104 4.104 28 H 0.267 0.733 29 H 0.030 0.970 30 H 0.031 0.969 31 H 0.081 0.919 32 H 0.106 0.894 33 H 0.136 0.864 34 H 0.158 0.842 35 H 0.166 0.834 36 H 0.170 0.830 37 H 0.130 0.870 38 H 0.132 0.868 39 H 0.112 0.888 40 H 0.137 0.863 41 H 0.153 0.847 42 H 0.157 0.843 43 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.892 -2.926 -5.474 7.903 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.555 5.555 2 C -0.170 4.170 3 Si 0.767 3.233 4 H -0.205 1.205 5 H -0.206 1.206 6 H -0.198 1.198 7 C -0.560 4.560 8 H 0.058 0.942 9 C 0.130 3.870 10 N -0.317 5.317 11 C 0.044 3.956 12 C -0.037 4.037 13 C -0.167 4.167 14 C -0.114 4.114 15 C -0.189 4.189 16 C -0.085 4.085 17 N -0.208 5.208 18 C 0.332 3.668 19 O -0.464 6.464 20 C -0.225 4.225 21 C -0.051 4.051 22 C -0.088 4.088 23 C -0.138 4.138 24 C -0.149 4.149 25 C -0.128 4.128 26 C -0.141 4.141 27 C -0.122 4.122 28 H 0.076 0.924 29 H 0.048 0.952 30 H 0.049 0.951 31 H 0.100 0.900 32 H 0.125 0.875 33 H 0.154 0.846 34 H 0.176 0.824 35 H 0.184 0.816 36 H 0.187 0.813 37 H 0.148 0.852 38 H 0.149 0.851 39 H 0.130 0.870 40 H 0.155 0.845 41 H 0.171 0.829 42 H 0.174 0.826 43 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges 5.129 -3.982 -6.006 8.845 hybrid contribution 0.112 1.888 0.964 2.123 sum 5.242 -2.094 -5.041 7.568 Atomic orbital electron populations 1.69995 1.06757 1.27835 1.50956 1.25423 0.95360 1.01388 0.94805 0.85765 0.78720 0.80729 0.78066 1.20489 1.20645 1.19790 1.21442 0.92448 0.91279 1.50813 0.94214 1.19220 0.87296 0.82698 0.97760 1.48025 1.44482 1.34676 1.04567 1.20243 0.92175 0.97023 0.86166 1.21591 0.93476 0.95086 0.93527 1.22094 1.00550 0.95708 0.98355 1.21927 0.92104 0.98820 0.98527 1.22447 0.99889 0.98088 0.98496 1.23176 0.96701 0.93479 0.95191 1.67512 0.99188 1.31180 1.22956 1.18561 0.80551 0.82322 0.85319 1.90701 1.36246 1.31130 1.88278 1.23146 1.04332 1.02873 0.92135 1.22383 0.95357 0.96611 0.90786 1.19132 0.98978 0.97590 0.93054 1.21615 0.96933 0.96034 0.99217 1.21368 1.00693 1.00616 0.92217 1.21673 0.96536 0.96039 0.98519 1.21469 0.97425 0.96689 0.98512 1.21631 0.99433 0.99863 0.91273 0.92388 0.95232 0.95109 0.90034 0.87544 0.84584 0.82422 0.81625 0.81264 0.85234 0.85070 0.87032 0.84518 0.82892 0.82551 0.83941 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -49.06 13.29 21.45 0.28 -48.77 16 2 C 0.03 1.58 5.46 84.65 0.46 2.04 16 3 Si 0.94 41.85 29.54 68.60 2.03 43.88 16 4 H -0.28 -12.68 7.11 99.48 0.71 -11.97 16 5 H -0.28 -12.35 7.11 99.48 0.71 -11.65 16 6 H -0.27 -11.64 7.11 99.48 0.71 -10.93 16 7 C -0.52 -26.83 9.23 25.60 0.24 -26.59 16 8 H 0.04 2.19 7.81 -2.91 -0.02 2.17 16 9 C 0.25 11.98 4.92 85.63 0.42 12.40 16 10 N -0.59 -26.20 2.44 -835.54 -2.04 -28.24 16 11 C 0.17 6.65 5.76 85.63 0.49 7.14 16 12 C 0.10 4.02 6.36 42.55 0.27 4.29 16 13 C -0.15 -5.19 9.57 22.36 0.21 -4.98 16 14 C -0.09 -2.60 10.18 22.47 0.23 -2.37 16 15 C -0.17 -4.64 10.11 22.36 0.23 -4.42 16 16 C 0.07 2.33 11.18 84.67 0.95 3.28 16 17 N -0.50 -20.18 10.27 -183.88 -1.89 -22.07 16 18 C 0.54 24.84 7.60 86.38 0.66 25.50 16 19 O -0.58 -28.46 15.81 -4.34 -0.07 -28.53 16 20 C -0.20 -8.54 8.61 23.62 0.20 -8.34 16 21 C -0.03 -1.14 9.46 23.84 0.23 -0.91 16 22 C -0.09 -2.74 5.87 -20.15 -0.12 -2.86 16 23 C -0.12 -3.81 9.41 22.57 0.21 -3.60 16 24 C -0.13 -3.34 10.03 22.23 0.22 -3.12 16 25 C -0.11 -2.22 10.04 22.35 0.22 -2.00 16 26 C -0.12 -2.44 10.03 22.22 0.22 -2.21 16 27 C -0.10 -2.55 9.80 22.57 0.22 -2.33 16 28 H 0.27 13.58 8.31 -92.71 -0.77 12.81 16 29 H 0.03 1.48 6.09 -2.39 -0.01 1.47 16 30 H 0.03 1.50 7.90 -2.39 -0.02 1.48 16 31 H 0.08 3.29 7.42 -2.39 -0.02 3.28 16 32 H 0.11 3.65 7.79 -2.39 -0.02 3.63 16 33 H 0.14 4.67 8.06 -2.91 -0.02 4.65 16 34 H 0.16 3.62 8.06 -2.91 -0.02 3.59 16 35 H 0.17 3.14 8.06 -2.91 -0.02 3.12 16 36 H 0.17 4.44 8.06 -2.91 -0.02 4.42 16 37 H 0.13 5.66 4.22 -2.91 -0.01 5.65 16 38 H 0.13 4.60 7.52 -2.91 -0.02 4.58 16 39 H 0.11 3.97 6.17 -2.91 -0.02 3.96 16 40 H 0.14 3.01 8.06 -2.91 -0.02 2.98 16 41 H 0.15 2.06 8.06 -2.91 -0.02 2.03 16 42 H 0.16 1.99 8.06 -2.91 -0.02 1.97 16 43 H 0.14 2.88 8.06 -2.91 -0.02 2.86 16 Total: -1.00 -67.62 373.98 4.90 -62.71 By element: Atomic # 1 Polarization: 29.08 SS G_CDS: 1.02 Total: 30.10 kcal Atomic # 6 Polarization: -14.65 SS G_CDS: 5.57 Total: -9.08 kcal Atomic # 7 Polarization: -95.45 SS G_CDS: -3.64 Total: -99.09 kcal Atomic # 8 Polarization: -28.46 SS G_CDS: -0.07 Total: -28.53 kcal Atomic # 14 Polarization: 41.85 SS G_CDS: 2.03 Total: 43.88 kcal Total: -67.62 4.90 -62.71 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000069769535.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 93.671 kcal (2) G-P(sol) polarization free energy of solvation -67.619 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.052 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.904 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.715 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.956 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.40 seconds