Wall clock time and date at job start Fri Apr 10 2020 18:26:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46506 * 109.47320 * 2 1 4 4 C 1.46499 * 119.99537 * 269.99999 * 3 2 1 5 5 C 1.50697 * 109.46949 * 269.99553 * 4 3 2 6 6 H 1.08004 * 120.00186 * 0.02562 * 5 4 3 7 7 C 1.37881 * 120.00081 * 180.02562 * 5 4 3 8 8 N 1.31517 * 119.99813 * 180.02562 * 7 5 4 9 9 Si 1.86797 * 120.00047 * 0.02562 * 7 5 4 10 10 H 1.48497 * 109.47231 * 89.99796 * 9 7 5 11 11 H 1.48499 * 109.47342 * 210.00322 * 9 7 5 12 12 H 1.48505 * 109.46935 * 330.00024 * 9 7 5 13 13 C 1.34777 * 120.00264 * 89.99349 * 3 2 1 14 14 O 1.21283 * 119.99750 * 180.02562 * 13 3 2 15 15 C 1.50702 * 119.99928 * 0.28128 * 13 3 2 16 16 N 1.46491 * 109.46957 * 179.72354 * 15 13 3 17 17 C 1.46503 * 120.00157 * 269.99880 * 16 15 13 18 18 C 1.39671 * 120.00446 * 89.99835 * 16 15 13 19 19 C 1.39011 * 120.02888 * 359.72605 * 18 16 15 20 20 C 1.38152 * 120.07926 * 179.71908 * 19 18 16 21 21 C 1.38159 * 120.15554 * 0.55454 * 20 19 18 22 22 C 1.39005 * 120.06707 * 359.72448 * 21 20 19 23 23 S 1.76200 * 120.04253 * 179.97438 * 22 21 20 24 24 C 1.81403 * 102.99968 * 0.02562 * 23 22 21 25 25 C 1.38732 * 120.03751 * 180.02562 * 18 16 15 26 26 H 1.09004 * 109.46895 * 60.00075 * 1 2 3 27 27 H 1.08992 * 109.47180 * 180.02562 * 1 2 3 28 28 H 1.08997 * 109.47106 * 300.00561 * 1 2 3 29 29 H 1.08994 * 109.47354 * 239.99891 * 2 1 3 30 30 H 1.09001 * 109.47139 * 119.99465 * 2 1 3 31 31 H 1.09001 * 109.47567 * 29.99407 * 4 3 2 32 32 H 1.09005 * 109.47076 * 149.99913 * 4 3 2 33 33 H 0.97004 * 119.99796 * 179.97438 * 8 7 5 34 34 H 1.09004 * 109.46965 * 299.72211 * 15 13 3 35 35 H 1.08994 * 109.46990 * 59.72065 * 15 13 3 36 36 H 1.08998 * 109.47311 * 89.99613 * 17 16 15 37 37 H 1.09001 * 109.47371 * 210.00280 * 17 16 15 38 38 H 1.09003 * 109.46700 * 329.99774 * 17 16 15 39 39 H 1.07991 * 119.95823 * 359.97438 * 19 18 16 40 40 H 1.07999 * 119.92286 * 180.25589 * 20 19 18 41 41 H 1.07999 * 119.96630 * 179.74151 * 21 20 19 42 42 H 1.08996 * 109.47172 * 300.00225 * 24 23 22 43 43 H 1.08994 * 109.47014 * 60.00214 * 24 23 22 44 44 H 1.09000 * 109.46849 * 180.02562 * 24 23 22 45 45 H 1.07997 * 120.07891 * 359.97438 * 25 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3813 0.0000 4 6 2.2625 2.0717 -1.2688 5 6 3.6858 1.8349 -1.7037 6 1 4.3427 1.2302 -1.0961 7 6 4.1495 2.3903 -2.8775 8 7 5.3915 2.1832 -3.2573 9 14 3.0137 3.4369 -3.9282 10 1 3.1174 4.8568 -3.5060 11 1 3.4067 3.3146 -5.3550 12 1 1.6138 2.9711 -3.7587 13 6 2.2429 2.0167 1.1672 14 8 2.6468 3.1603 1.1671 15 6 1.9977 1.3042 2.4723 16 7 2.3200 2.2001 3.5857 17 6 3.6773 2.2252 4.1364 18 6 1.3333 3.0303 4.1222 19 6 0.0466 3.0113 3.5965 20 6 -0.9317 3.8278 4.1302 21 6 -0.6323 4.6743 5.1803 22 6 0.6537 4.7027 5.7071 23 16 1.0349 5.7830 7.0458 24 6 -0.5449 6.6176 7.3593 25 6 1.6379 3.8794 5.1763 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0276 0.0005 28 1 -0.3633 0.5139 0.8899 29 1 1.8933 -0.5138 -0.8899 30 1 1.8933 -0.5138 0.8900 31 1 1.5818 1.6876 -2.0285 32 1 2.0956 3.1410 -1.1385 33 1 5.7176 2.5736 -4.0832 34 1 0.9499 1.0100 2.5343 35 1 2.6281 0.4167 2.5258 36 1 4.2713 2.9688 3.6051 37 1 3.6353 2.4823 5.1948 38 1 4.1352 1.2429 4.0190 39 1 -0.1897 2.3543 2.7726 40 1 -1.9316 3.8080 3.7225 41 1 -1.3984 5.3144 5.5924 42 1 -0.8562 7.1546 6.4633 43 1 -1.3012 5.8776 7.6205 44 1 -0.4264 7.3226 8.1821 45 1 2.6379 3.8993 5.5837 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000079036776.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:26:23 Heat of formation + Delta-G solvation = 10.474521 kcal Electronic energy + Delta-G solvation = -25130.631539 eV Core-core repulsion = 21661.036937 eV Total energy + Delta-G solvation = -3469.594602 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 322.146 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -39.91344 -38.76520 -36.08713 -35.23547 -32.75648 -31.23527 -30.63561 -30.34237 -29.10947 -28.81483 -27.29749 -25.01533 -23.02879 -22.81389 -22.14053 -20.92196 -18.56838 -17.98416 -16.95985 -16.68057 -16.43501 -15.91144 -15.71495 -15.03110 -14.69602 -14.37600 -14.28157 -14.02478 -13.92245 -13.71397 -13.54464 -13.48510 -13.01829 -12.80755 -12.63589 -12.52401 -12.27472 -12.03511 -11.98309 -11.70913 -11.50955 -11.46537 -11.14891 -11.00236 -10.73827 -10.51716 -10.32521 -10.27869 -10.17033 -9.56852 -9.49442 -9.01774 -8.60277 -7.74783 -7.58512 -7.18866 -6.10449 -4.09047 1.32215 1.40765 1.60537 2.29261 3.06119 3.27988 3.29091 3.34010 3.36367 3.78677 3.92287 4.38348 4.81420 4.82711 4.84456 4.92160 4.96756 5.10566 5.14119 5.19242 5.24068 5.33116 5.35974 5.41254 5.49800 5.52752 5.64198 5.65316 5.67682 5.81892 5.91770 5.94964 6.10368 6.21367 6.31637 6.35132 6.52452 6.66833 6.74512 6.93207 7.21521 7.34307 7.50547 7.60088 8.22808 8.45265 8.90837 8.97050 9.50166 11.02958 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.016520 B = 0.003070 C = 0.002972 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1694.558882 B = 9117.418193 C = 9418.327955 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.105 3.895 3 N -0.594 5.594 4 C 0.217 3.783 5 C -0.527 4.527 6 H 0.073 0.927 7 C 0.072 3.928 8 N -0.898 5.898 9 Si 0.876 3.124 10 H -0.274 1.274 11 H -0.285 1.285 12 H -0.266 1.266 13 C 0.484 3.516 14 O -0.525 6.525 15 C 0.104 3.896 16 N -0.607 5.607 17 C 0.093 3.907 18 C 0.249 3.751 19 C -0.196 4.196 20 C -0.053 4.053 21 C -0.198 4.198 22 C -0.037 4.037 23 S -0.127 6.127 24 C -0.142 4.142 25 C -0.177 4.177 26 H 0.060 0.940 27 H 0.063 0.937 28 H 0.050 0.950 29 H 0.086 0.914 30 H 0.066 0.934 31 H 0.029 0.971 32 H 0.035 0.965 33 H 0.264 0.736 34 H 0.099 0.901 35 H 0.101 0.899 36 H 0.057 0.943 37 H 0.068 0.932 38 H 0.067 0.933 39 H 0.120 0.880 40 H 0.122 0.878 41 H 0.117 0.883 42 H 0.084 0.916 43 H 0.083 0.917 44 H 0.104 0.896 45 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.751 -0.980 19.100 23.556 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C -0.019 4.019 3 N -0.327 5.327 4 C 0.096 3.904 5 C -0.566 4.566 6 H 0.091 0.909 7 C -0.130 4.130 8 N -0.536 5.536 9 Si 0.703 3.297 10 H -0.199 1.199 11 H -0.211 1.211 12 H -0.191 1.191 13 C 0.268 3.732 14 O -0.400 6.400 15 C -0.024 4.024 16 N -0.315 5.315 17 C -0.050 4.050 18 C 0.145 3.855 19 C -0.221 4.221 20 C -0.074 4.074 21 C -0.223 4.223 22 C -0.150 4.150 23 S 0.115 5.885 24 C -0.310 4.310 25 C -0.205 4.205 26 H 0.079 0.921 27 H 0.082 0.918 28 H 0.069 0.931 29 H 0.104 0.896 30 H 0.085 0.915 31 H 0.047 0.953 32 H 0.053 0.947 33 H 0.074 0.926 34 H 0.117 0.883 35 H 0.119 0.881 36 H 0.076 0.924 37 H 0.087 0.913 38 H 0.086 0.914 39 H 0.138 0.862 40 H 0.140 0.860 41 H 0.135 0.865 42 H 0.103 0.897 43 H 0.102 0.898 44 H 0.123 0.877 45 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges -12.225 -0.176 19.552 23.060 hybrid contribution -1.549 0.295 -1.601 2.247 sum -13.774 0.120 17.951 22.627 Atomic orbital electron populations 1.22246 0.96736 1.01672 1.02228 1.21460 0.93425 0.83905 1.03139 1.48000 1.64351 1.13314 1.07020 1.19626 0.97258 0.93355 0.80117 1.21314 0.95340 1.32849 1.07095 0.90857 1.24857 0.94989 0.95788 0.97376 1.69897 1.15137 1.45021 1.23582 0.86854 0.81459 0.81655 0.79747 1.19929 1.21058 1.19082 1.21039 0.79028 0.87590 0.85514 1.90692 1.44551 1.17877 1.86890 1.21474 1.03037 0.92669 0.85186 1.45999 1.08985 1.42303 1.34193 1.21708 0.82345 1.02407 0.98521 1.17578 0.88239 0.88890 0.90841 1.20680 0.92342 1.05182 1.03852 1.20704 0.98438 0.93862 0.94384 1.20799 0.95222 1.04672 1.01628 1.21299 0.96287 0.98900 0.98519 1.85407 1.17506 1.46364 1.39237 1.23630 0.98197 1.03380 1.05814 1.20120 0.99293 1.00681 1.00428 0.92118 0.91843 0.93109 0.89577 0.91533 0.95320 0.94739 0.92563 0.88299 0.88085 0.92444 0.91334 0.91400 0.86187 0.86028 0.86540 0.89739 0.89813 0.87704 0.85507 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.99 10.24 37.16 0.38 -1.61 16 2 C 0.10 1.52 5.94 -4.04 -0.02 1.50 16 3 N -0.59 -11.78 2.46 -175.06 -0.43 -12.21 16 4 C 0.22 5.27 4.23 -5.20 -0.02 5.25 16 5 C -0.53 -15.08 9.94 -34.44 -0.34 -15.42 16 6 H 0.07 2.29 8.06 -52.48 -0.42 1.87 16 7 C 0.07 2.11 5.47 -17.82 -0.10 2.01 16 8 N -0.90 -27.73 13.96 55.43 0.77 -26.95 16 9 Si 0.88 21.73 27.47 -169.99 -4.67 17.06 16 10 H -0.27 -6.89 7.11 56.52 0.40 -6.48 16 11 H -0.28 -6.91 7.11 56.52 0.40 -6.51 16 12 H -0.27 -6.20 6.54 56.52 0.37 -5.83 16 13 C 0.48 9.59 7.74 -10.98 -0.09 9.51 16 14 O -0.52 -13.02 16.01 5.55 0.09 -12.93 16 15 C 0.10 1.48 4.23 -5.20 -0.02 1.45 16 16 N -0.61 -8.93 2.50 -181.03 -0.45 -9.38 16 17 C 0.09 1.20 10.23 59.85 0.61 1.81 16 18 C 0.25 3.73 6.55 -83.82 -0.55 3.18 16 19 C -0.20 -2.76 9.20 -39.33 -0.36 -3.12 16 20 C -0.05 -0.66 10.03 -39.64 -0.40 -1.06 16 21 C -0.20 -2.42 9.36 -39.33 -0.37 -2.79 16 22 C -0.04 -0.49 6.11 -39.07 -0.24 -0.73 16 23 S -0.13 -1.41 22.56 -107.50 -2.43 -3.84 16 24 C -0.14 -1.05 9.15 101.05 0.92 -0.13 16 25 C -0.18 -2.53 8.95 -39.17 -0.35 -2.88 16 26 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 27 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 28 H 0.05 0.55 7.24 -51.93 -0.38 0.17 16 29 H 0.09 1.33 8.07 -51.93 -0.42 0.91 16 30 H 0.07 0.78 6.43 -51.93 -0.33 0.45 16 31 H 0.03 0.66 7.13 -51.93 -0.37 0.29 16 32 H 0.03 0.91 6.85 -51.93 -0.36 0.56 16 33 H 0.26 7.64 8.31 -40.82 -0.34 7.30 16 34 H 0.10 1.17 5.28 -51.93 -0.27 0.90 16 35 H 0.10 1.21 7.15 -51.93 -0.37 0.84 16 36 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 37 H 0.07 0.74 6.20 -51.93 -0.32 0.42 16 38 H 0.07 0.74 7.89 -51.93 -0.41 0.33 16 39 H 0.12 1.60 6.14 -52.49 -0.32 1.28 16 40 H 0.12 1.20 8.06 -52.49 -0.42 0.77 16 41 H 0.12 1.15 5.87 -52.49 -0.31 0.84 16 42 H 0.08 0.61 7.74 -51.93 -0.40 0.21 16 43 H 0.08 0.55 7.75 -51.93 -0.40 0.15 16 44 H 0.10 0.59 8.14 -51.92 -0.42 0.17 16 45 H 0.13 1.70 6.14 -52.49 -0.32 1.38 16 LS Contribution 375.93 15.07 5.67 5.67 Total: -1.00 -35.56 375.93 -9.08 -44.64 By element: Atomic # 1 Polarization: 7.66 SS G_CDS: -6.69 Total: 0.97 kcal Atomic # 6 Polarization: -2.08 SS G_CDS: -0.94 Total: -3.02 kcal Atomic # 7 Polarization: -48.44 SS G_CDS: -0.11 Total: -48.54 kcal Atomic # 8 Polarization: -13.02 SS G_CDS: 0.09 Total: -12.93 kcal Atomic # 14 Polarization: 21.73 SS G_CDS: -4.67 Total: 17.06 kcal Atomic # 16 Polarization: -1.41 SS G_CDS: -2.43 Total: -3.84 kcal Total LS contribution 5.67 Total: 5.67 kcal Total: -35.56 -9.08 -44.64 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000079036776.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.114 kcal (2) G-P(sol) polarization free energy of solvation -35.557 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.557 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.082 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.639 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.475 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds