Wall clock time and date at job start Fri Apr 10 2020 18:26:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46506 * 109.47320 * 2 1 4 4 C 1.46499 * 119.99537 * 269.99999 * 3 2 1 5 5 C 1.50697 * 109.46949 * 269.99553 * 4 3 2 6 6 H 1.08004 * 120.00186 * 0.02562 * 5 4 3 7 7 C 1.37881 * 120.00081 * 180.02562 * 5 4 3 8 8 N 1.31517 * 119.99813 * 180.02562 * 7 5 4 9 9 Si 1.86797 * 120.00047 * 0.02562 * 7 5 4 10 10 H 1.48497 * 109.47231 * 89.99796 * 9 7 5 11 11 H 1.48499 * 109.47342 * 210.00322 * 9 7 5 12 12 H 1.48505 * 109.46935 * 330.00024 * 9 7 5 13 13 C 1.34777 * 120.00264 * 89.99349 * 3 2 1 14 14 O 1.21283 * 119.99750 * 180.02562 * 13 3 2 15 15 C 1.50702 * 119.99928 * 0.28128 * 13 3 2 16 16 N 1.46491 * 109.46957 * 179.72354 * 15 13 3 17 17 C 1.46503 * 120.00157 * 269.99880 * 16 15 13 18 18 C 1.39671 * 120.00446 * 89.99835 * 16 15 13 19 19 C 1.39011 * 120.02888 * 359.72605 * 18 16 15 20 20 C 1.38152 * 120.07926 * 179.71908 * 19 18 16 21 21 C 1.38159 * 120.15554 * 0.55454 * 20 19 18 22 22 C 1.39005 * 120.06707 * 359.72448 * 21 20 19 23 23 S 1.76200 * 120.04253 * 179.97438 * 22 21 20 24 24 C 1.81403 * 102.99968 * 0.02562 * 23 22 21 25 25 C 1.38732 * 120.03751 * 180.02562 * 18 16 15 26 26 H 1.09004 * 109.46895 * 60.00075 * 1 2 3 27 27 H 1.08992 * 109.47180 * 180.02562 * 1 2 3 28 28 H 1.08997 * 109.47106 * 300.00561 * 1 2 3 29 29 H 1.08994 * 109.47354 * 239.99891 * 2 1 3 30 30 H 1.09001 * 109.47139 * 119.99465 * 2 1 3 31 31 H 1.09001 * 109.47567 * 29.99407 * 4 3 2 32 32 H 1.09005 * 109.47076 * 149.99913 * 4 3 2 33 33 H 0.97004 * 119.99796 * 179.97438 * 8 7 5 34 34 H 1.09004 * 109.46965 * 299.72211 * 15 13 3 35 35 H 1.08994 * 109.46990 * 59.72065 * 15 13 3 36 36 H 1.08998 * 109.47311 * 89.99613 * 17 16 15 37 37 H 1.09001 * 109.47371 * 210.00280 * 17 16 15 38 38 H 1.09003 * 109.46700 * 329.99774 * 17 16 15 39 39 H 1.07991 * 119.95823 * 359.97438 * 19 18 16 40 40 H 1.07999 * 119.92286 * 180.25589 * 20 19 18 41 41 H 1.07999 * 119.96630 * 179.74151 * 21 20 19 42 42 H 1.08996 * 109.47172 * 300.00225 * 24 23 22 43 43 H 1.08994 * 109.47014 * 60.00214 * 24 23 22 44 44 H 1.09000 * 109.46849 * 180.02562 * 24 23 22 45 45 H 1.07997 * 120.07891 * 359.97438 * 25 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3813 0.0000 4 6 2.2625 2.0717 -1.2688 5 6 3.6858 1.8349 -1.7037 6 1 4.3427 1.2302 -1.0961 7 6 4.1495 2.3903 -2.8775 8 7 5.3915 2.1832 -3.2573 9 14 3.0137 3.4369 -3.9282 10 1 3.1174 4.8568 -3.5060 11 1 3.4067 3.3146 -5.3550 12 1 1.6138 2.9711 -3.7587 13 6 2.2429 2.0167 1.1672 14 8 2.6468 3.1603 1.1671 15 6 1.9977 1.3042 2.4723 16 7 2.3200 2.2001 3.5857 17 6 3.6773 2.2252 4.1364 18 6 1.3333 3.0303 4.1222 19 6 0.0466 3.0113 3.5965 20 6 -0.9317 3.8278 4.1302 21 6 -0.6323 4.6743 5.1803 22 6 0.6537 4.7027 5.7071 23 16 1.0349 5.7830 7.0458 24 6 -0.5449 6.6176 7.3593 25 6 1.6379 3.8794 5.1763 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0276 0.0005 28 1 -0.3633 0.5139 0.8899 29 1 1.8933 -0.5138 -0.8899 30 1 1.8933 -0.5138 0.8900 31 1 1.5818 1.6876 -2.0285 32 1 2.0956 3.1410 -1.1385 33 1 5.7176 2.5736 -4.0832 34 1 0.9499 1.0100 2.5343 35 1 2.6281 0.4167 2.5258 36 1 4.2713 2.9688 3.6051 37 1 3.6353 2.4823 5.1948 38 1 4.1352 1.2429 4.0190 39 1 -0.1897 2.3543 2.7726 40 1 -1.9316 3.8080 3.7225 41 1 -1.3984 5.3144 5.5924 42 1 -0.8562 7.1546 6.4633 43 1 -1.3012 5.8776 7.6205 44 1 -0.4264 7.3226 8.1821 45 1 2.6379 3.8993 5.5837 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000079036776.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:26:22 Heat of formation + Delta-G solvation = -11.303948 kcal Electronic energy + Delta-G solvation = -25131.575925 eV Core-core repulsion = 21661.036937 eV Total energy + Delta-G solvation = -3470.538988 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 322.146 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -41.17970 -40.03129 -37.29459 -36.69011 -34.87507 -32.32640 -31.91741 -31.46095 -30.31751 -29.57850 -28.88304 -26.19085 -24.49390 -24.10018 -23.39419 -22.03655 -19.99189 -19.17501 -18.98788 -18.11830 -17.46300 -17.20306 -16.76551 -16.49806 -16.04893 -15.82419 -15.37652 -15.20099 -14.83888 -14.72528 -14.64535 -14.58182 -14.47876 -14.19937 -13.82453 -13.62582 -13.54056 -13.34874 -13.20480 -12.98534 -12.86108 -12.57576 -12.44863 -12.40475 -12.09848 -12.04993 -11.87341 -11.76199 -11.42696 -11.12202 -10.85708 -10.66616 -10.34693 -9.41042 -8.54478 -8.36631 -8.21300 -6.40896 0.32124 0.58438 0.61755 1.28939 1.33411 1.41349 1.52327 1.78881 1.96261 2.28000 2.44909 2.84680 2.98057 3.68700 3.88354 3.93042 4.06409 4.17552 4.22590 4.29336 4.30990 4.31826 4.37193 4.43522 4.52828 4.63529 4.64819 4.69863 4.79024 4.83333 4.87115 4.88015 4.90509 5.01441 5.03077 5.21991 5.34181 5.40586 5.46055 5.54590 5.64894 5.78347 6.15336 6.24214 6.44798 6.60310 6.73886 7.20202 7.44519 8.80337 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.016520 B = 0.003070 C = 0.002972 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1694.558882 B = 9117.418193 C = 9418.327955 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.096 3.904 3 N -0.600 5.600 4 C 0.227 3.773 5 C -0.532 4.532 6 H 0.030 0.970 7 C 0.011 3.989 8 N -0.945 5.945 9 Si 0.945 3.055 10 H -0.280 1.280 11 H -0.273 1.273 12 H -0.238 1.238 13 C 0.475 3.525 14 O -0.587 6.587 15 C 0.115 3.885 16 N -0.615 5.615 17 C 0.092 3.908 18 C 0.228 3.772 19 C -0.212 4.212 20 C -0.055 4.055 21 C -0.199 4.199 22 C -0.047 4.047 23 S -0.156 6.156 24 C -0.132 4.132 25 C -0.196 4.196 26 H 0.044 0.956 27 H 0.096 0.904 28 H 0.062 0.938 29 H 0.072 0.928 30 H 0.100 0.900 31 H 0.047 0.953 32 H 0.011 0.989 33 H 0.268 0.732 34 H 0.131 0.869 35 H 0.129 0.871 36 H 0.023 0.977 37 H 0.086 0.914 38 H 0.088 0.912 39 H 0.126 0.874 40 H 0.150 0.850 41 H 0.142 0.858 42 H 0.089 0.911 43 H 0.096 0.904 44 H 0.125 0.875 45 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.235 -1.435 20.172 26.571 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C -0.026 4.026 3 N -0.332 5.332 4 C 0.104 3.896 5 C -0.571 4.571 6 H 0.048 0.952 7 C -0.187 4.187 8 N -0.585 5.585 9 Si 0.768 3.232 10 H -0.206 1.206 11 H -0.198 1.198 12 H -0.161 1.161 13 C 0.262 3.738 14 O -0.467 6.467 15 C -0.012 4.012 16 N -0.323 5.323 17 C -0.050 4.050 18 C 0.124 3.876 19 C -0.236 4.236 20 C -0.075 4.075 21 C -0.224 4.224 22 C -0.160 4.160 23 S 0.086 5.914 24 C -0.300 4.300 25 C -0.224 4.224 26 H 0.064 0.936 27 H 0.115 0.885 28 H 0.081 0.919 29 H 0.091 0.909 30 H 0.118 0.882 31 H 0.065 0.935 32 H 0.029 0.971 33 H 0.077 0.923 34 H 0.148 0.852 35 H 0.147 0.853 36 H 0.041 0.959 37 H 0.105 0.895 38 H 0.107 0.893 39 H 0.144 0.856 40 H 0.168 0.832 41 H 0.160 0.840 42 H 0.108 0.892 43 H 0.115 0.885 44 H 0.144 0.856 45 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -15.746 -0.682 20.655 25.981 hybrid contribution -0.431 0.464 -1.825 1.931 sum -16.177 -0.219 18.831 24.826 Atomic orbital electron populations 1.22176 0.93929 1.03780 1.02085 1.21827 0.95675 0.80940 1.04200 1.48133 1.64195 1.15232 1.05629 1.19236 0.94739 0.92736 0.82865 1.21557 0.97073 1.31882 1.06570 0.95206 1.25829 0.96662 0.97193 0.99014 1.70046 1.17354 1.46639 1.24508 0.85756 0.80599 0.78903 0.77940 1.20614 1.19817 1.16119 1.22174 0.77347 0.87095 0.87137 1.90656 1.47324 1.20789 1.87904 1.21549 1.05486 0.92427 0.81734 1.46149 1.09383 1.42679 1.34122 1.21748 0.81674 1.02554 0.99050 1.17847 0.88862 0.89456 0.91438 1.20898 0.92427 1.06030 1.04272 1.21077 0.99379 0.92995 0.94055 1.21164 0.95342 1.04599 1.01289 1.21547 0.96593 0.98875 0.98999 1.85505 1.21001 1.46477 1.38465 1.23753 0.95841 1.03624 1.06811 1.20267 0.99718 1.01434 1.01005 0.93649 0.88544 0.91890 0.90914 0.88205 0.93478 0.97107 0.92298 0.85182 0.85338 0.95873 0.89528 0.89317 0.85639 0.83248 0.84007 0.89211 0.88481 0.85623 0.85785 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.23 10.24 71.98 0.74 -2.50 16 2 C 0.10 2.58 5.94 86.38 0.51 3.10 16 3 N -0.60 -23.62 2.46 -826.15 -2.03 -25.65 16 4 C 0.23 11.13 4.23 85.63 0.36 11.49 16 5 C -0.53 -31.51 9.94 25.60 0.25 -31.25 16 6 H 0.03 1.96 8.06 -2.91 -0.02 1.94 16 7 C 0.01 0.65 5.47 84.66 0.46 1.12 16 8 N -0.95 -60.33 13.96 21.45 0.30 -60.03 16 9 Si 0.95 45.25 27.47 68.60 1.88 47.14 16 10 H -0.28 -13.66 7.11 99.48 0.71 -12.95 16 11 H -0.27 -12.47 7.11 99.48 0.71 -11.76 16 12 H -0.24 -10.22 6.54 99.48 0.65 -9.57 16 13 C 0.48 18.90 7.74 87.66 0.68 19.58 16 14 O -0.59 -30.26 16.01 -3.04 -0.05 -30.31 16 15 C 0.12 3.09 4.23 85.64 0.36 3.46 16 16 N -0.61 -17.85 2.50 -726.65 -1.81 -19.66 16 17 C 0.09 2.42 10.23 127.77 1.31 3.73 16 18 C 0.23 6.73 6.55 38.20 0.25 6.98 16 19 C -0.21 -5.65 9.20 22.43 0.21 -5.45 16 20 C -0.05 -1.24 10.03 22.23 0.22 -1.01 16 21 C -0.20 -4.43 9.36 22.44 0.21 -4.22 16 22 C -0.05 -1.20 6.11 22.60 0.14 -1.07 16 23 S -0.16 -3.32 22.56 -56.49 -1.27 -4.59 16 24 C -0.13 -1.60 9.15 113.37 1.04 -0.56 16 25 C -0.20 -5.64 8.95 22.54 0.20 -5.44 16 26 H 0.04 1.05 8.14 -2.38 -0.02 1.03 16 27 H 0.10 1.33 8.14 -2.39 -0.02 1.31 16 28 H 0.06 1.12 7.24 -2.39 -0.02 1.10 16 29 H 0.07 2.16 8.07 -2.39 -0.02 2.14 16 30 H 0.10 2.02 6.43 -2.39 -0.02 2.01 16 31 H 0.05 2.13 7.13 -2.39 -0.02 2.11 16 32 H 0.01 0.58 6.85 -2.38 -0.02 0.57 16 33 H 0.27 15.91 8.31 -92.71 -0.77 15.14 16 34 H 0.13 2.68 5.28 -2.38 -0.01 2.66 16 35 H 0.13 2.74 7.15 -2.39 -0.02 2.72 16 36 H 0.02 0.74 8.14 -2.39 -0.02 0.72 16 37 H 0.09 1.90 6.20 -2.39 -0.01 1.88 16 38 H 0.09 1.89 7.89 -2.39 -0.02 1.87 16 39 H 0.13 3.08 6.14 -2.92 -0.02 3.06 16 40 H 0.15 2.43 8.06 -2.91 -0.02 2.41 16 41 H 0.14 2.33 5.87 -2.91 -0.02 2.32 16 42 H 0.09 1.03 7.74 -2.39 -0.02 1.01 16 43 H 0.10 0.95 7.75 -2.39 -0.02 0.93 16 44 H 0.13 1.02 8.14 -2.39 -0.02 1.00 16 45 H 0.12 3.46 6.14 -2.91 -0.02 3.44 16 Total: -1.00 -82.95 375.93 4.89 -78.06 By element: Atomic # 1 Polarization: 16.17 SS G_CDS: 0.93 Total: 17.10 kcal Atomic # 6 Polarization: -8.99 SS G_CDS: 6.94 Total: -2.04 kcal Atomic # 7 Polarization: -101.80 SS G_CDS: -3.54 Total: -105.34 kcal Atomic # 8 Polarization: -30.26 SS G_CDS: -0.05 Total: -30.31 kcal Atomic # 14 Polarization: 45.25 SS G_CDS: 1.88 Total: 47.14 kcal Atomic # 16 Polarization: -3.32 SS G_CDS: -1.27 Total: -4.59 kcal Total: -82.95 4.89 -78.06 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000079036776.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.752 kcal (2) G-P(sol) polarization free energy of solvation -82.948 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.196 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.892 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.056 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.304 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds