Wall clock time and date at job start Fri Apr 10 2020 18:26:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31616 * 1 3 3 Si 1.86795 * 120.00190 * 2 1 4 4 H 1.48497 * 109.47307 * 275.28350 * 3 2 1 5 5 H 1.48499 * 109.46918 * 35.28176 * 3 2 1 6 6 H 1.48500 * 109.47058 * 155.28202 * 3 2 1 7 7 C 1.38818 * 120.00013 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99510 * 37.07536 * 7 2 1 9 9 N 1.36929 * 120.00276 * 217.35632 * 7 2 1 10 10 C 1.46972 * 120.59073 * 26.23339 * 9 7 2 11 11 C 1.53815 * 108.39473 * 124.76046 * 10 9 7 12 12 N 1.46973 * 108.57877 * 49.63763 * 11 10 9 13 13 C 1.34775 * 120.59035 * 124.66342 * 12 11 10 14 14 O 1.21284 * 119.99753 * 179.97438 * 13 12 11 15 15 C 1.50694 * 120.00363 * 359.97438 * 13 12 11 16 16 C 1.53002 * 109.47230 * 179.97438 * 15 13 12 17 17 H 1.08996 * 109.46933 * 55.00369 * 16 15 13 18 18 O 1.42899 * 109.47447 * 294.99902 * 16 15 13 19 19 C 1.50700 * 109.46955 * 174.99755 * 16 15 13 20 20 C 1.38271 * 119.98819 * 264.99961 * 19 16 15 21 21 C 1.38229 * 120.05004 * 179.97438 * 20 19 16 22 22 C 1.38222 * 120.02296 * 0.02562 * 21 20 19 23 23 C 1.38431 * 119.97606 * 359.97438 * 22 21 20 24 24 F 1.35100 * 120.02568 * 180.02562 * 23 22 21 25 25 C 1.38178 * 119.98531 * 84.73243 * 19 16 15 26 26 C 1.46957 * 118.81406 * 304.64856 * 12 11 10 27 27 C 1.46960 * 120.59772 * 206.52209 * 9 7 2 28 28 H 0.97000 * 120.00046 * 0.02562 * 1 2 3 29 29 H 1.09002 * 109.61298 * 244.54233 * 10 9 7 30 30 H 1.08995 * 109.61261 * 5.05756 * 10 9 7 31 31 H 1.08994 * 109.74454 * 289.85281 * 11 10 9 32 32 H 1.09004 * 109.67411 * 169.38330 * 11 10 9 33 33 H 1.09000 * 109.47333 * 299.99748 * 15 13 12 34 34 H 1.09000 * 109.47189 * 59.99446 * 15 13 12 35 35 H 0.96691 * 114.00100 * 300.00089 * 18 16 15 36 36 H 1.07997 * 119.97292 * 0.02691 * 20 19 16 37 37 H 1.08000 * 119.98734 * 180.02562 * 21 20 19 38 38 H 1.08006 * 120.00658 * 180.02562 * 22 21 20 39 39 H 1.07998 * 120.01384 * 359.97438 * 25 19 16 40 40 H 1.09004 * 109.60829 * 295.48016 * 26 12 11 41 41 H 1.08995 * 109.61517 * 174.97194 * 26 12 11 42 42 H 1.09001 * 109.60662 * 354.94142 * 27 9 7 43 43 H 1.08998 * 109.61756 * 115.28412 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.3861 2.1108 -1.3941 5 1 1.5079 2.6178 0.8087 6 1 3.5991 1.4104 0.5854 7 6 2.0102 -1.2022 -0.0005 8 1 1.6339 -2.0427 -0.5648 9 7 3.1689 -1.3242 0.7189 10 6 3.4071 -0.4842 1.9012 11 6 3.7059 -1.4036 3.0976 12 7 4.7362 -2.3725 2.6978 13 6 5.8767 -2.4924 3.4059 14 8 6.7195 -3.2958 3.0666 15 6 6.1047 -1.6282 4.6192 16 6 7.4650 -1.9621 5.2348 17 1 8.2416 -1.8604 4.4767 18 8 7.4500 -3.3045 5.7243 19 6 7.7472 -1.0155 6.3730 20 6 8.4964 0.1257 6.1532 21 6 8.7556 0.9950 7.1962 22 6 8.2663 0.7241 8.4602 23 6 7.5161 -0.4181 8.6813 24 9 7.0370 -0.6836 9.9163 25 6 7.2525 -1.2855 7.6346 26 6 4.5005 -3.2084 1.5123 27 6 4.1992 -2.2929 0.3191 28 1 -0.4850 0.8400 -0.0004 29 1 4.2586 0.1714 1.7186 30 1 2.5201 0.1137 2.1099 31 1 2.7995 -1.9334 3.3902 32 1 4.0688 -0.8087 3.9359 33 1 6.0857 -0.5785 4.3264 34 1 5.3192 -1.8154 5.3514 35 1 6.7816 -3.4679 6.4036 36 1 8.8787 0.3383 5.1658 37 1 9.3406 1.8863 7.0233 38 1 8.4687 1.4038 9.2748 39 1 6.6633 -2.1745 7.8049 40 1 3.6505 -3.8667 1.6921 41 1 5.3890 -3.8034 1.3016 42 1 3.8352 -2.8898 -0.5171 43 1 5.1047 -1.7631 0.0236 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000089246953.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:26:36 Heat of formation + Delta-G solvation = -87.316881 kcal Electronic energy + Delta-G solvation = -27199.448770 eV Core-core repulsion = 23159.400438 eV Total energy + Delta-G solvation = -4040.048332 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 322.148 amu Computer time = 1.37 seconds Orbital eigenvalues (eV) -49.90527 -41.35631 -40.29807 -38.66416 -37.58022 -35.59301 -33.70563 -33.11186 -32.28133 -31.59457 -30.67127 -28.75349 -26.10782 -24.95334 -24.63475 -23.64015 -22.61316 -21.96127 -20.22147 -19.23458 -18.52046 -17.86991 -17.60679 -17.28458 -17.12069 -16.87620 -16.60991 -16.58368 -16.31803 -16.00066 -15.54130 -15.26720 -15.09652 -14.73025 -14.70629 -14.53606 -14.23455 -14.12310 -13.89598 -13.45050 -13.40899 -12.86662 -12.83016 -12.76789 -12.51579 -12.36970 -12.26116 -12.16263 -12.00499 -11.86845 -11.41464 -11.18797 -10.75638 -10.65679 -9.96456 -9.83100 -9.67162 -8.87279 -8.23419 -5.39184 0.12451 0.21454 1.36155 1.48806 1.54422 1.68376 2.00773 2.44985 2.57229 2.93307 3.14717 3.38820 3.41829 3.49431 3.70300 3.77356 3.92480 4.10832 4.12948 4.16612 4.19379 4.31603 4.36603 4.39038 4.43821 4.56661 4.62075 4.71692 4.78305 4.80110 4.83337 4.88751 5.01527 5.07757 5.14476 5.19325 5.34600 5.48283 5.53336 5.85323 5.90210 6.10739 6.50905 6.76058 6.90087 7.22357 7.62451 8.04797 8.94626 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.015815 B = 0.003141 C = 0.002852 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1770.021811 B = 8913.366829 C = 9814.054870 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.926 5.926 2 C -0.010 4.010 3 Si 0.900 3.100 4 H -0.306 1.306 5 H -0.292 1.292 6 H -0.234 1.234 7 C -0.268 4.268 8 H 0.048 0.952 9 N -0.613 5.613 10 C 0.124 3.876 11 C 0.097 3.903 12 N -0.606 5.606 13 C 0.512 3.488 14 O -0.573 6.573 15 C -0.163 4.163 16 C 0.173 3.827 17 H 0.105 0.895 18 O -0.559 6.559 19 C -0.091 4.091 20 C -0.123 4.123 21 C -0.085 4.085 22 C -0.157 4.157 23 C 0.079 3.921 24 F -0.150 7.150 25 C -0.151 4.151 26 C 0.105 3.895 27 C 0.133 3.867 28 H 0.263 0.737 29 H 0.040 0.960 30 H 0.062 0.938 31 H 0.067 0.933 32 H 0.118 0.882 33 H 0.124 0.876 34 H 0.121 0.879 35 H 0.381 0.619 36 H 0.147 0.853 37 H 0.161 0.839 38 H 0.151 0.849 39 H 0.145 0.855 40 H 0.062 0.938 41 H 0.088 0.912 42 H 0.070 0.930 43 H 0.030 0.970 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.174 2.332 18.079 25.045 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.569 5.569 2 C -0.209 4.209 3 Si 0.727 3.273 4 H -0.234 1.234 5 H -0.219 1.219 6 H -0.157 1.157 7 C -0.397 4.397 8 H 0.066 0.934 9 N -0.337 5.337 10 C -0.001 4.001 11 C -0.027 4.027 12 N -0.338 5.338 13 C 0.301 3.699 14 O -0.453 6.453 15 C -0.203 4.203 16 C 0.114 3.886 17 H 0.123 0.877 18 O -0.366 6.366 19 C -0.092 4.092 20 C -0.141 4.141 21 C -0.103 4.103 22 C -0.175 4.175 23 C 0.060 3.940 24 F -0.129 7.129 25 C -0.170 4.170 26 C -0.019 4.019 27 C 0.007 3.993 28 H 0.072 0.928 29 H 0.058 0.942 30 H 0.080 0.920 31 H 0.085 0.915 32 H 0.136 0.864 33 H 0.142 0.858 34 H 0.139 0.861 35 H 0.230 0.770 36 H 0.165 0.835 37 H 0.179 0.821 38 H 0.169 0.831 39 H 0.163 0.837 40 H 0.080 0.920 41 H 0.107 0.893 42 H 0.088 0.912 43 H 0.048 0.952 Dipole moment (debyes) X Y Z Total from point charges 17.919 1.891 17.518 25.131 hybrid contribution -0.972 0.810 -0.008 1.265 sum 16.947 2.701 17.510 24.518 Atomic orbital electron populations 1.70202 1.07820 1.27627 1.51280 1.25705 0.95209 1.00396 0.99544 0.86569 0.81812 0.81682 0.77236 1.23422 1.21880 1.15709 1.18687 0.97495 0.95880 1.27607 0.93404 1.44410 1.17739 1.43644 1.27949 1.21869 0.99092 0.92738 0.86447 1.22459 0.91101 0.91205 0.97958 1.48115 1.18542 1.38977 1.28212 1.21012 0.80420 0.83573 0.84865 1.90693 1.44652 1.39138 1.70793 1.22499 1.00171 1.01834 0.95791 1.20422 0.96053 0.80200 0.91969 0.87748 1.86739 1.61289 1.28093 1.60448 1.20352 0.97876 0.96613 0.94321 1.21398 0.98075 0.93624 1.00977 1.21349 0.98035 0.99958 0.90981 1.21482 0.99326 0.96776 0.99954 1.17894 0.99171 0.97017 0.79896 1.91487 1.86671 1.94063 1.40632 1.20994 1.03056 1.00891 0.92018 1.21941 1.01200 0.93202 0.85544 1.21408 0.90958 0.91394 0.95524 0.92755 0.94226 0.91988 0.91473 0.86400 0.85769 0.86136 0.76961 0.83509 0.82111 0.83143 0.83738 0.92007 0.89334 0.91168 0.95198 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -54.93 13.97 21.65 0.30 -54.63 16 2 C -0.01 -0.57 4.80 84.86 0.41 -0.16 16 3 Si 0.90 41.71 26.47 68.60 1.82 43.53 16 4 H -0.31 -14.78 7.11 99.48 0.71 -14.08 16 5 H -0.29 -13.39 7.11 99.48 0.71 -12.69 16 6 H -0.23 -9.76 4.99 99.48 0.50 -9.26 16 7 C -0.27 -14.38 9.84 84.04 0.83 -13.55 16 8 H 0.05 2.83 8.05 -2.91 -0.02 2.81 16 9 N -0.61 -27.06 2.71 -697.32 -1.89 -28.95 16 10 C 0.12 4.64 4.58 86.56 0.40 5.03 16 11 C 0.10 2.75 6.52 86.56 0.56 3.31 16 12 N -0.61 -18.15 2.95 -817.14 -2.41 -20.56 16 13 C 0.51 14.27 7.58 87.66 0.66 14.93 16 14 O -0.57 -20.19 14.83 10.73 0.16 -20.03 16 15 C -0.16 -2.93 3.71 29.85 0.11 -2.82 16 16 C 0.17 3.21 2.76 29.85 0.08 3.29 16 17 H 0.10 2.22 7.86 -2.39 -0.02 2.21 16 18 O -0.56 -12.19 12.37 -135.21 -1.67 -13.86 16 19 C -0.09 -1.39 5.00 -19.87 -0.10 -1.49 16 20 C -0.12 -1.57 9.68 22.28 0.22 -1.36 16 21 C -0.09 -0.93 10.04 22.26 0.22 -0.70 16 22 C -0.16 -2.04 10.03 22.31 0.22 -1.81 16 23 C 0.08 1.31 7.30 22.37 0.16 1.47 16 24 F -0.15 -2.84 17.27 44.97 0.78 -2.06 16 25 C -0.15 -2.31 9.31 22.31 0.21 -2.10 16 26 C 0.11 3.49 6.59 86.42 0.57 4.06 16 27 C 0.13 5.00 6.67 86.42 0.58 5.58 16 28 H 0.26 14.80 8.31 -92.71 -0.77 14.03 16 29 H 0.04 1.43 6.78 -2.39 -0.02 1.42 16 30 H 0.06 2.52 5.60 -2.39 -0.01 2.50 16 31 H 0.07 2.02 8.14 -2.39 -0.02 2.00 16 32 H 0.12 2.30 5.91 -2.39 -0.01 2.29 16 33 H 0.12 1.80 7.72 -2.39 -0.02 1.78 16 34 H 0.12 1.64 7.91 -2.39 -0.02 1.62 16 35 H 0.38 5.44 7.40 -74.06 -0.55 4.89 16 36 H 0.15 1.42 8.06 -2.91 -0.02 1.40 16 37 H 0.16 0.86 8.06 -2.91 -0.02 0.83 16 38 H 0.15 1.39 8.06 -2.91 -0.02 1.37 16 39 H 0.14 1.75 6.62 -2.91 -0.02 1.73 16 40 H 0.06 2.09 8.14 -2.39 -0.02 2.07 16 41 H 0.09 2.89 6.99 -2.39 -0.02 2.88 16 42 H 0.07 2.65 7.93 -2.39 -0.02 2.63 16 43 H 0.03 1.11 8.14 -2.39 -0.02 1.09 16 Total: -1.00 -71.86 349.85 2.50 -69.36 By element: Atomic # 1 Polarization: 13.24 SS G_CDS: 0.29 Total: 13.52 kcal Atomic # 6 Polarization: 8.56 SS G_CDS: 5.13 Total: 13.69 kcal Atomic # 7 Polarization: -100.14 SS G_CDS: -3.99 Total: -104.13 kcal Atomic # 8 Polarization: -32.38 SS G_CDS: -1.51 Total: -33.89 kcal Atomic # 9 Polarization: -2.84 SS G_CDS: 0.78 Total: -2.06 kcal Atomic # 14 Polarization: 41.71 SS G_CDS: 1.82 Total: 43.53 kcal Total: -71.86 2.50 -69.36 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000089246953.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.960 kcal (2) G-P(sol) polarization free energy of solvation -71.860 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.820 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.503 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.357 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.317 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.37 seconds