Wall clock time and date at job start Fri Apr 10 2020 18:26:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81396 * 1 3 3 C 1.81398 * 103.00000 * 2 1 4 4 C 1.50701 * 109.46809 * 180.02562 * 3 2 1 5 5 C 1.38302 * 119.96879 * 89.99762 * 4 3 2 6 6 C 1.38261 * 120.14144 * 179.97438 * 5 4 3 7 7 C 1.38128 * 120.06913 * 0.02562 * 6 5 4 8 8 C 1.38850 * 119.93487 * 359.97438 * 7 6 5 9 9 N 1.39935 * 120.07580 * 179.97438 * 8 7 6 10 10 C 1.34780 * 119.99812 * 335.19260 * 9 8 7 11 11 O 1.21584 * 119.99936 * 354.38645 * 10 9 8 12 12 N 1.34782 * 119.99847 * 174.39119 * 10 9 8 13 13 C 1.46492 * 120.00200 * 359.97438 * 12 10 9 14 14 C 1.46497 * 119.99740 * 179.97438 * 12 10 9 15 15 H 1.09005 * 109.47481 * 359.97438 * 14 12 10 16 16 C 1.53006 * 109.46932 * 119.99600 * 14 12 10 17 17 C 1.50691 * 109.47459 * 239.99814 * 14 12 10 18 18 H 1.08006 * 120.00101 * 0.02562 * 17 14 12 19 19 C 1.37873 * 120.00379 * 180.02562 * 17 14 12 20 20 N 1.31516 * 120.00295 * 180.02562 * 19 17 14 21 21 Si 1.86806 * 120.00020 * 359.97438 * 19 17 14 22 22 H 1.48494 * 109.47084 * 90.00182 * 21 19 17 23 23 H 1.48501 * 109.47207 * 209.99921 * 21 19 17 24 24 H 1.48502 * 109.46873 * 329.99960 * 21 19 17 25 25 C 1.38093 * 119.96308 * 270.25070 * 4 3 2 26 26 C 1.50706 * 120.03518 * 0.02562 * 25 4 3 27 27 H 1.09004 * 109.47031 * 299.99846 * 1 2 3 28 28 H 1.08995 * 109.47679 * 59.99985 * 1 2 3 29 29 H 1.09001 * 109.47292 * 180.02562 * 1 2 3 30 30 H 1.08991 * 109.47508 * 60.00136 * 3 2 1 31 31 H 1.09005 * 109.46949 * 299.99826 * 3 2 1 32 32 H 1.08005 * 119.92995 * 359.97438 * 5 4 3 33 33 H 1.08002 * 119.96414 * 180.02562 * 6 5 4 34 34 H 1.08004 * 120.03616 * 180.02562 * 7 6 5 35 35 H 0.97004 * 120.00462 * 155.19352 * 9 8 7 36 36 H 1.09000 * 109.47249 * 270.00176 * 13 12 10 37 37 H 1.09002 * 109.47178 * 30.00403 * 13 12 10 38 38 H 1.08997 * 109.47078 * 150.00193 * 13 12 10 39 39 H 1.08992 * 109.47201 * 300.00161 * 16 14 12 40 40 H 1.08997 * 109.46914 * 60.00181 * 16 14 12 41 41 H 1.08997 * 109.47201 * 180.02562 * 16 14 12 42 42 H 0.96999 * 119.99972 * 180.02562 * 20 19 17 43 43 H 1.08991 * 109.47326 * 270.23384 * 26 25 4 44 44 H 1.08995 * 109.46938 * 30.23824 * 26 25 4 45 45 H 1.08999 * 109.46862 * 150.23454 * 26 25 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2220 1.7675 0.0000 4 6 3.7194 1.9373 -0.0006 5 6 4.4054 2.0152 -1.1990 6 6 5.7791 2.1714 -1.2038 7 6 6.4709 2.2497 -0.0108 8 6 5.7853 2.1719 1.1941 9 7 6.4832 2.2503 2.4045 10 6 7.7849 1.9045 2.4554 11 8 8.3261 1.4284 1.4763 12 7 8.4865 2.0864 3.5917 13 6 7.8345 2.6605 4.7712 14 6 9.9012 1.7100 3.6472 15 1 10.2072 1.3036 2.6831 16 6 10.7450 2.9444 3.9718 17 6 10.1023 0.6684 4.7174 18 1 9.2604 0.3211 5.2980 19 6 11.3611 0.1587 4.9555 20 7 11.5365 -0.7507 5.8893 21 14 12.8172 0.7588 3.9509 22 1 13.4348 1.9291 4.6247 23 1 13.8197 -0.3304 3.8330 24 1 12.3546 1.1546 2.5964 25 6 4.4059 2.0096 1.1954 26 6 3.6584 1.9184 2.5009 27 1 -0.3633 0.5138 0.8900 28 1 -0.3634 0.5138 -0.8899 29 1 -0.3634 -1.0277 0.0005 30 1 1.8032 2.2371 0.8899 31 1 1.8031 2.2371 -0.8900 32 1 3.8668 1.9538 -2.1332 33 1 6.3119 2.2324 -2.1413 34 1 7.5440 2.3722 -0.0151 35 1 6.0302 2.5536 3.2069 36 1 7.9359 3.7456 4.7504 37 1 6.7775 2.3942 4.7678 38 1 8.3049 2.2689 5.6731 39 1 10.5996 3.6978 3.1977 40 1 10.4390 3.3504 4.9360 41 1 11.7976 2.6645 4.0127 42 1 12.4221 -1.1090 6.0570 43 1 3.3584 2.9169 2.8184 44 1 2.7723 1.2973 2.3695 45 1 4.3039 1.4747 3.2588 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000095964703.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:26:42 Heat of formation + Delta-G solvation = 11.534931 kcal Electronic energy + Delta-G solvation = -25069.017031 eV Core-core repulsion = 21599.468412 eV Total energy + Delta-G solvation = -3469.548619 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 322.146 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -40.60209 -38.92929 -35.90664 -34.71098 -33.38897 -32.76779 -31.05740 -29.86841 -29.24050 -27.37711 -26.38888 -26.32387 -25.15199 -22.89994 -21.15601 -20.76249 -19.13188 -18.00287 -17.08616 -16.56641 -16.15395 -15.85896 -15.63969 -15.41074 -14.77617 -14.56958 -14.24300 -13.98678 -13.91700 -13.59316 -13.33054 -13.21828 -12.98189 -12.80396 -12.67677 -12.54935 -12.39649 -12.24675 -11.96503 -11.88832 -11.60095 -11.32924 -11.20193 -11.08867 -10.74682 -10.35196 -10.17818 -10.11273 -9.65673 -9.41614 -9.28726 -8.65081 -8.50022 -8.00533 -7.89586 -7.61163 -6.16390 -4.17412 0.94548 1.44704 1.89013 2.39494 3.03174 3.22575 3.36789 3.39285 3.54768 4.01464 4.30573 4.33893 4.50338 4.64044 4.81364 4.84451 4.90475 5.06823 5.16774 5.20444 5.25440 5.38024 5.45591 5.49133 5.53124 5.66590 5.78888 5.83170 5.88705 6.09023 6.17862 6.22060 6.29004 6.38923 6.44451 6.51789 6.63812 6.71215 6.80728 6.87560 7.22430 7.30780 7.50165 7.59856 8.31240 8.46067 8.83491 9.02072 9.44318 10.96271 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.021752 B = 0.002856 C = 0.002768 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1286.956701 B = 9801.966487 C =10114.858699 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 S -0.247 6.247 3 C -0.040 4.040 4 C -0.062 4.062 5 C -0.127 4.127 6 C -0.103 4.103 7 C -0.122 4.122 8 C 0.183 3.817 9 N -0.688 5.688 10 C 0.699 3.301 11 O -0.576 6.576 12 N -0.597 5.597 13 C 0.082 3.918 14 C 0.244 3.756 15 H 0.065 0.935 16 C -0.161 4.161 17 C -0.530 4.530 18 H 0.079 0.921 19 C 0.076 3.924 20 N -0.894 5.894 21 Si 0.883 3.117 22 H -0.277 1.277 23 H -0.294 1.294 24 H -0.262 1.262 25 C -0.108 4.108 26 C -0.120 4.120 27 H 0.075 0.925 28 H 0.074 0.926 29 H 0.100 0.900 30 H 0.090 0.910 31 H 0.088 0.912 32 H 0.119 0.881 33 H 0.124 0.876 34 H 0.151 0.849 35 H 0.404 0.596 36 H 0.046 0.954 37 H 0.048 0.952 38 H 0.091 0.909 39 H 0.033 0.967 40 H 0.055 0.945 41 H 0.051 0.949 42 H 0.266 0.734 43 H 0.067 0.933 44 H 0.076 0.924 45 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.600 9.403 -9.454 24.539 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.298 4.298 2 S -0.019 6.019 3 C -0.188 4.188 4 C -0.064 4.064 5 C -0.148 4.148 6 C -0.122 4.122 7 C -0.144 4.144 8 C 0.086 3.914 9 N -0.336 5.336 10 C 0.401 3.599 11 O -0.454 6.454 12 N -0.330 5.330 13 C -0.062 4.062 14 C 0.142 3.858 15 H 0.083 0.917 16 C -0.219 4.219 17 C -0.568 4.568 18 H 0.097 0.903 19 C -0.127 4.127 20 N -0.532 5.532 21 Si 0.713 3.287 22 H -0.204 1.204 23 H -0.221 1.221 24 H -0.187 1.187 25 C -0.113 4.113 26 C -0.176 4.176 27 H 0.094 0.906 28 H 0.093 0.907 29 H 0.119 0.881 30 H 0.108 0.892 31 H 0.106 0.894 32 H 0.138 0.862 33 H 0.142 0.858 34 H 0.169 0.831 35 H 0.241 0.759 36 H 0.065 0.935 37 H 0.067 0.933 38 H 0.110 0.890 39 H 0.052 0.948 40 H 0.074 0.926 41 H 0.069 0.931 42 H 0.076 0.924 43 H 0.086 0.914 44 H 0.095 0.905 45 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -19.350 8.046 -9.944 23.196 hybrid contribution -0.242 1.333 0.149 1.363 sum -19.592 9.379 -9.795 23.828 Atomic orbital electron populations 1.23418 0.95261 1.06451 1.04685 1.87466 1.05904 1.10627 1.97879 1.22289 0.96218 0.94832 1.05422 1.18646 0.92317 1.02637 0.92799 1.20850 0.94427 1.02694 0.96834 1.20986 0.93705 0.99648 0.97849 1.21587 1.02217 1.00107 0.90444 1.17367 0.89887 0.98422 0.85698 1.42951 1.10528 1.69644 1.10452 1.15918 0.80428 0.79127 0.84412 1.90833 1.69226 1.50249 1.35110 1.47199 1.12399 1.63927 1.09525 1.21622 0.96233 0.97395 0.90978 1.19242 0.74421 0.92383 0.99746 0.91732 1.22459 1.00050 0.98927 1.00436 1.21158 0.95740 1.21422 1.18475 0.90317 1.24852 0.98609 0.94495 0.94719 1.69872 1.23253 1.28425 1.31623 0.86914 0.82514 0.77559 0.81691 1.20394 1.22119 1.18713 1.19295 0.91977 1.04645 0.95361 1.20801 1.00668 1.02003 0.94161 0.90612 0.90659 0.88142 0.89151 0.89374 0.86250 0.85793 0.83142 0.75862 0.93531 0.93314 0.89022 0.94792 0.92574 0.93060 0.92385 0.91433 0.90480 0.91522 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -0.85 10.76 101.05 1.09 0.24 16 2 S -0.25 -2.57 21.98 -107.50 -2.36 -4.93 16 3 C -0.04 -0.37 5.32 36.01 0.19 -0.18 16 4 C -0.06 -0.73 5.14 -104.65 -0.54 -1.27 16 5 C -0.13 -1.51 9.70 -39.55 -0.38 -1.89 16 6 C -0.10 -1.37 10.04 -39.61 -0.40 -1.77 16 7 C -0.12 -1.97 8.71 -39.40 -0.34 -2.31 16 8 C 0.18 2.84 6.41 -83.69 -0.54 2.30 16 9 N -0.69 -10.92 4.85 -14.22 -0.07 -10.99 16 10 C 0.70 14.18 8.09 -86.91 -0.70 13.48 16 11 O -0.58 -13.66 12.83 5.29 0.07 -13.59 16 12 N -0.60 -12.11 2.75 -181.01 -0.50 -12.61 16 13 C 0.08 1.28 9.25 59.84 0.55 1.83 16 14 C 0.24 5.83 2.23 -69.08 -0.15 5.67 16 15 H 0.06 1.72 5.96 -51.93 -0.31 1.41 16 16 C -0.16 -3.40 8.67 37.16 0.32 -3.08 16 17 C -0.53 -14.49 8.57 -34.45 -0.30 -14.79 16 18 H 0.08 2.31 7.58 -52.48 -0.40 1.91 16 19 C 0.08 2.16 5.45 -17.82 -0.10 2.06 16 20 N -0.89 -26.81 13.96 55.43 0.77 -26.03 16 21 Si 0.88 21.72 24.37 -169.99 -4.14 17.57 16 22 H -0.28 -6.49 6.87 56.52 0.39 -6.10 16 23 H -0.29 -7.27 7.11 56.52 0.40 -6.87 16 24 H -0.26 -6.37 6.53 56.52 0.37 -6.00 16 25 C -0.11 -1.39 5.90 -104.43 -0.62 -2.01 16 26 C -0.12 -1.23 8.62 36.01 0.31 -0.92 16 27 H 0.07 0.42 8.14 -51.92 -0.42 0.00 16 28 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 29 H 0.10 0.59 8.14 -51.92 -0.42 0.17 16 30 H 0.09 0.70 6.72 -51.93 -0.35 0.35 16 31 H 0.09 0.66 8.08 -51.92 -0.42 0.24 16 32 H 0.12 1.15 8.06 -52.48 -0.42 0.73 16 33 H 0.12 1.38 8.06 -52.49 -0.42 0.95 16 34 H 0.15 2.76 5.79 -52.48 -0.30 2.46 16 35 H 0.40 5.18 5.11 -40.82 -0.21 4.98 16 36 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 37 H 0.05 0.61 6.29 -51.93 -0.33 0.29 16 38 H 0.09 1.58 7.02 -51.93 -0.36 1.22 16 39 H 0.03 0.64 8.14 -51.93 -0.42 0.22 16 40 H 0.06 1.10 7.67 -51.93 -0.40 0.70 16 41 H 0.05 1.14 3.27 -51.93 -0.17 0.97 16 42 H 0.27 7.50 8.31 -40.82 -0.34 7.16 16 43 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 44 H 0.08 0.75 6.37 -51.93 -0.33 0.42 16 45 H 0.07 0.72 6.99 -51.93 -0.36 0.36 16 LS Contribution 364.21 15.07 5.49 5.49 Total: -1.00 -33.00 364.21 -8.85 -41.84 By element: Atomic # 1 Polarization: 12.38 SS G_CDS: -6.50 Total: 5.88 kcal Atomic # 6 Polarization: -1.02 SS G_CDS: -1.60 Total: -2.62 kcal Atomic # 7 Polarization: -49.84 SS G_CDS: 0.21 Total: -49.64 kcal Atomic # 8 Polarization: -13.66 SS G_CDS: 0.07 Total: -13.59 kcal Atomic # 14 Polarization: 21.72 SS G_CDS: -4.14 Total: 17.57 kcal Atomic # 16 Polarization: -2.57 SS G_CDS: -2.36 Total: -4.93 kcal Total LS contribution 5.49 Total: 5.49 kcal Total: -33.00 -8.85 -41.84 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000095964703.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.379 kcal (2) G-P(sol) polarization free energy of solvation -32.999 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.380 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.845 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.844 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.535 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds