Wall clock time and date at job start Fri Apr 10 2020 18:26:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81396 * 1 3 3 C 1.81398 * 103.00000 * 2 1 4 4 C 1.50701 * 109.46809 * 180.02562 * 3 2 1 5 5 C 1.38302 * 119.96879 * 89.99762 * 4 3 2 6 6 C 1.38261 * 120.14144 * 179.97438 * 5 4 3 7 7 C 1.38128 * 120.06913 * 0.02562 * 6 5 4 8 8 C 1.38850 * 119.93487 * 359.97438 * 7 6 5 9 9 N 1.39935 * 120.07580 * 179.97438 * 8 7 6 10 10 C 1.34780 * 119.99812 * 335.19260 * 9 8 7 11 11 O 1.21584 * 119.99936 * 354.38645 * 10 9 8 12 12 N 1.34782 * 119.99847 * 174.39119 * 10 9 8 13 13 C 1.46492 * 120.00200 * 359.97438 * 12 10 9 14 14 C 1.46497 * 119.99740 * 179.97438 * 12 10 9 15 15 H 1.09005 * 109.47481 * 359.97438 * 14 12 10 16 16 C 1.53006 * 109.46932 * 119.99600 * 14 12 10 17 17 C 1.50691 * 109.47459 * 239.99814 * 14 12 10 18 18 H 1.08006 * 120.00101 * 0.02562 * 17 14 12 19 19 C 1.37873 * 120.00379 * 180.02562 * 17 14 12 20 20 N 1.31516 * 120.00295 * 180.02562 * 19 17 14 21 21 Si 1.86806 * 120.00020 * 359.97438 * 19 17 14 22 22 H 1.48494 * 109.47084 * 90.00182 * 21 19 17 23 23 H 1.48501 * 109.47207 * 209.99921 * 21 19 17 24 24 H 1.48502 * 109.46873 * 329.99960 * 21 19 17 25 25 C 1.38093 * 119.96308 * 270.25070 * 4 3 2 26 26 C 1.50706 * 120.03518 * 0.02562 * 25 4 3 27 27 H 1.09004 * 109.47031 * 299.99846 * 1 2 3 28 28 H 1.08995 * 109.47679 * 59.99985 * 1 2 3 29 29 H 1.09001 * 109.47292 * 180.02562 * 1 2 3 30 30 H 1.08991 * 109.47508 * 60.00136 * 3 2 1 31 31 H 1.09005 * 109.46949 * 299.99826 * 3 2 1 32 32 H 1.08005 * 119.92995 * 359.97438 * 5 4 3 33 33 H 1.08002 * 119.96414 * 180.02562 * 6 5 4 34 34 H 1.08004 * 120.03616 * 180.02562 * 7 6 5 35 35 H 0.97004 * 120.00462 * 155.19352 * 9 8 7 36 36 H 1.09000 * 109.47249 * 270.00176 * 13 12 10 37 37 H 1.09002 * 109.47178 * 30.00403 * 13 12 10 38 38 H 1.08997 * 109.47078 * 150.00193 * 13 12 10 39 39 H 1.08992 * 109.47201 * 300.00161 * 16 14 12 40 40 H 1.08997 * 109.46914 * 60.00181 * 16 14 12 41 41 H 1.08997 * 109.47201 * 180.02562 * 16 14 12 42 42 H 0.96999 * 119.99972 * 180.02562 * 20 19 17 43 43 H 1.08991 * 109.47326 * 270.23384 * 26 25 4 44 44 H 1.08995 * 109.46938 * 30.23824 * 26 25 4 45 45 H 1.08999 * 109.46862 * 150.23454 * 26 25 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2220 1.7675 0.0000 4 6 3.7194 1.9373 -0.0006 5 6 4.4054 2.0152 -1.1990 6 6 5.7791 2.1714 -1.2038 7 6 6.4709 2.2497 -0.0108 8 6 5.7853 2.1719 1.1941 9 7 6.4832 2.2503 2.4045 10 6 7.7849 1.9045 2.4554 11 8 8.3261 1.4284 1.4763 12 7 8.4865 2.0864 3.5917 13 6 7.8345 2.6605 4.7712 14 6 9.9012 1.7100 3.6472 15 1 10.2072 1.3036 2.6831 16 6 10.7450 2.9444 3.9718 17 6 10.1023 0.6684 4.7174 18 1 9.2604 0.3211 5.2980 19 6 11.3611 0.1587 4.9555 20 7 11.5365 -0.7507 5.8893 21 14 12.8172 0.7588 3.9509 22 1 13.4348 1.9291 4.6247 23 1 13.8197 -0.3304 3.8330 24 1 12.3546 1.1546 2.5964 25 6 4.4059 2.0096 1.1954 26 6 3.6584 1.9184 2.5009 27 1 -0.3633 0.5138 0.8900 28 1 -0.3634 0.5138 -0.8899 29 1 -0.3634 -1.0277 0.0005 30 1 1.8032 2.2371 0.8899 31 1 1.8031 2.2371 -0.8900 32 1 3.8668 1.9538 -2.1332 33 1 6.3119 2.2324 -2.1413 34 1 7.5440 2.3722 -0.0151 35 1 6.0302 2.5536 3.2069 36 1 7.9359 3.7456 4.7504 37 1 6.7775 2.3942 4.7678 38 1 8.3049 2.2689 5.6731 39 1 10.5996 3.6978 3.1977 40 1 10.4390 3.3504 4.9360 41 1 11.7976 2.6645 4.0127 42 1 12.4221 -1.1090 6.0570 43 1 3.3584 2.9169 2.8184 44 1 2.7723 1.2973 2.3695 45 1 4.3039 1.4747 3.2588 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000095964703.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:26:41 Heat of formation + Delta-G solvation = -8.457221 kcal Electronic energy + Delta-G solvation = -25069.883956 eV Core-core repulsion = 21599.468412 eV Total energy + Delta-G solvation = -3470.415544 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 322.146 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -41.93170 -40.17383 -37.52459 -36.11165 -34.76044 -34.30265 -32.60338 -31.17440 -29.78459 -28.34264 -27.72450 -27.29228 -27.16410 -24.33211 -22.22964 -22.19503 -20.58562 -19.46106 -18.80071 -18.03390 -17.33052 -16.97611 -16.93825 -16.77127 -16.18234 -15.93398 -15.28849 -15.09859 -14.83021 -14.66934 -14.57250 -14.37012 -14.16809 -14.14494 -13.97489 -13.68438 -13.54863 -13.42597 -13.15108 -13.07629 -13.03399 -12.86612 -12.66082 -12.32271 -12.07862 -12.04014 -11.59070 -11.49711 -11.33495 -10.95464 -10.88197 -10.79864 -9.54937 -9.49161 -8.86269 -8.65482 -8.35713 -6.40292 0.05767 0.38901 1.08459 1.26041 1.36219 1.44740 1.62249 1.74110 2.10007 2.27481 2.91411 2.93986 3.00556 3.64519 3.86677 4.01462 4.15999 4.23193 4.30545 4.39428 4.40347 4.40830 4.49949 4.55063 4.56185 4.56863 4.67904 4.72561 4.78267 4.82248 4.86553 4.93102 4.95455 5.04904 5.17226 5.27385 5.36238 5.47846 5.48307 5.60381 5.61413 5.69164 5.96058 6.11639 6.30408 6.61462 6.94132 7.23447 7.50271 8.80328 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.021752 B = 0.002856 C = 0.002768 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1286.956701 B = 9801.966487 C =10114.858699 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 S -0.316 6.316 3 C -0.027 4.027 4 C -0.063 4.063 5 C -0.121 4.121 6 C -0.109 4.109 7 C -0.150 4.150 8 C 0.153 3.847 9 N -0.670 5.670 10 C 0.694 3.306 11 O -0.619 6.619 12 N -0.605 5.605 13 C 0.078 3.922 14 C 0.248 3.752 15 H 0.032 0.968 16 C -0.152 4.152 17 C -0.527 4.527 18 H 0.046 0.954 19 C 0.024 3.976 20 N -0.939 5.939 21 Si 0.941 3.059 22 H -0.251 1.251 23 H -0.297 1.297 24 H -0.262 1.262 25 C -0.105 4.105 26 C -0.118 4.118 27 H 0.089 0.911 28 H 0.090 0.910 29 H 0.105 0.895 30 H 0.108 0.892 31 H 0.110 0.890 32 H 0.147 0.853 33 H 0.139 0.861 34 H 0.119 0.881 35 H 0.418 0.582 36 H 0.078 0.922 37 H 0.079 0.921 38 H 0.072 0.928 39 H 0.055 0.945 40 H 0.072 0.928 41 H 0.043 0.957 42 H 0.269 0.731 43 H 0.095 0.905 44 H 0.084 0.916 45 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.265 11.477 -10.226 27.885 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.280 4.280 2 S -0.089 6.089 3 C -0.174 4.174 4 C -0.065 4.065 5 C -0.142 4.142 6 C -0.128 4.128 7 C -0.171 4.171 8 C 0.058 3.942 9 N -0.319 5.319 10 C 0.396 3.604 11 O -0.500 6.500 12 N -0.339 5.339 13 C -0.065 4.065 14 C 0.144 3.856 15 H 0.050 0.950 16 C -0.210 4.210 17 C -0.565 4.565 18 H 0.064 0.936 19 C -0.175 4.175 20 N -0.579 5.579 21 Si 0.768 3.232 22 H -0.177 1.177 23 H -0.224 1.224 24 H -0.187 1.187 25 C -0.110 4.110 26 C -0.175 4.175 27 H 0.108 0.892 28 H 0.109 0.891 29 H 0.123 0.877 30 H 0.126 0.874 31 H 0.128 0.872 32 H 0.165 0.835 33 H 0.157 0.843 34 H 0.137 0.863 35 H 0.258 0.742 36 H 0.097 0.903 37 H 0.097 0.903 38 H 0.090 0.910 39 H 0.074 0.926 40 H 0.091 0.909 41 H 0.061 0.939 42 H 0.078 0.922 43 H 0.113 0.887 44 H 0.103 0.897 45 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -22.079 10.165 -10.696 26.556 hybrid contribution 0.360 0.630 0.335 0.800 sum -21.719 10.795 -10.361 26.374 Atomic orbital electron populations 1.23443 0.91165 1.07258 1.06120 1.87724 1.10511 1.12529 1.98105 1.22276 0.94042 0.93623 1.07416 1.19017 0.94079 1.01129 0.92249 1.21192 0.93803 1.00936 0.98226 1.21182 0.94662 0.99432 0.97487 1.21475 1.01025 1.02421 0.92189 1.17599 0.91017 1.00551 0.85067 1.42624 1.08848 1.68995 1.11464 1.16092 0.81624 0.78938 0.83784 1.90808 1.70511 1.52104 1.36609 1.47134 1.11470 1.64270 1.11029 1.21853 0.97401 0.98959 0.88246 1.18888 0.77269 0.92843 0.96553 0.94992 1.22302 0.98728 0.97900 1.02070 1.21370 0.94693 1.22051 1.18422 0.93593 1.25626 1.01497 0.94680 0.95715 1.69998 1.24074 1.30180 1.33630 0.85989 0.79161 0.77784 0.80312 1.17652 1.22429 1.18686 1.19589 0.90915 1.03295 0.97179 1.20867 1.00371 1.03742 0.92495 0.89227 0.89137 0.87666 0.87367 0.87210 0.83539 0.84278 0.86318 0.74161 0.90350 0.90257 0.90951 0.92593 0.90945 0.93854 0.92228 0.88672 0.89678 0.92320 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.09 10.76 113.37 1.22 0.13 16 2 S -0.32 -5.86 21.98 -56.49 -1.24 -7.10 16 3 C -0.03 -0.39 5.32 71.24 0.38 -0.01 16 4 C -0.06 -1.33 5.14 -19.88 -0.10 -1.44 16 5 C -0.12 -2.62 9.70 22.29 0.22 -2.41 16 6 C -0.11 -2.86 10.04 22.25 0.22 -2.63 16 7 C -0.15 -4.97 8.71 22.39 0.20 -4.77 16 8 C 0.15 4.74 6.41 38.15 0.24 4.99 16 9 N -0.67 -21.18 4.85 -317.17 -1.54 -22.72 16 10 C 0.69 28.80 8.09 179.05 1.45 30.25 16 11 O -0.62 -30.86 12.83 -3.98 -0.05 -30.91 16 12 N -0.61 -24.76 2.75 -844.86 -2.33 -27.08 16 13 C 0.08 2.34 9.25 127.77 1.18 3.53 16 14 C 0.25 12.03 2.23 44.24 0.10 12.12 16 15 H 0.03 1.77 5.96 -2.38 -0.01 1.75 16 16 C -0.15 -6.25 8.67 71.98 0.62 -5.62 16 17 C -0.53 -29.72 8.57 25.60 0.22 -29.50 16 18 H 0.05 2.82 7.58 -2.91 -0.02 2.80 16 19 C 0.02 1.37 5.45 84.65 0.46 1.83 16 20 N -0.94 -57.94 13.96 21.45 0.30 -57.64 16 21 Si 0.94 45.31 24.37 68.60 1.67 46.98 16 22 H -0.25 -11.01 6.87 99.48 0.68 -10.32 16 23 H -0.30 -14.31 7.11 99.48 0.71 -13.60 16 24 H -0.26 -12.53 6.53 99.48 0.65 -11.88 16 25 C -0.10 -2.54 5.90 -19.74 -0.12 -2.66 16 26 C -0.12 -2.13 8.62 71.24 0.61 -1.51 16 27 H 0.09 0.65 8.14 -2.39 -0.02 0.63 16 28 H 0.09 0.63 8.14 -2.39 -0.02 0.61 16 29 H 0.10 0.95 8.14 -2.39 -0.02 0.93 16 30 H 0.11 1.22 6.72 -2.40 -0.02 1.20 16 31 H 0.11 1.17 8.08 -2.39 -0.02 1.15 16 32 H 0.15 2.35 8.06 -2.91 -0.02 2.32 16 33 H 0.14 3.05 8.06 -2.91 -0.02 3.03 16 34 H 0.12 4.69 5.79 -2.91 -0.02 4.67 16 35 H 0.42 10.17 5.11 -92.71 -0.47 9.69 16 36 H 0.08 1.88 8.14 -2.39 -0.02 1.86 16 37 H 0.08 1.86 6.29 -2.39 -0.01 1.84 16 38 H 0.07 2.49 7.02 -2.39 -0.02 2.47 16 39 H 0.06 2.04 8.14 -2.39 -0.02 2.02 16 40 H 0.07 2.71 7.67 -2.39 -0.02 2.69 16 41 H 0.04 1.84 3.27 -2.39 -0.01 1.83 16 42 H 0.27 15.53 8.31 -92.71 -0.77 14.76 16 43 H 0.09 1.20 8.14 -2.39 -0.02 1.18 16 44 H 0.08 1.42 6.37 -2.39 -0.02 1.40 16 45 H 0.06 1.16 6.99 -2.39 -0.02 1.14 16 Total: -1.00 -76.18 364.21 4.18 -72.00 By element: Atomic # 1 Polarization: 23.73 SS G_CDS: 0.45 Total: 24.18 kcal Atomic # 6 Polarization: -4.63 SS G_CDS: 6.91 Total: 2.28 kcal Atomic # 7 Polarization: -103.87 SS G_CDS: -3.56 Total: -107.44 kcal Atomic # 8 Polarization: -30.86 SS G_CDS: -0.05 Total: -30.91 kcal Atomic # 14 Polarization: 45.31 SS G_CDS: 1.67 Total: 46.98 kcal Atomic # 16 Polarization: -5.86 SS G_CDS: -1.24 Total: -7.10 kcal Total: -76.18 4.18 -72.00 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000095964703.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.544 kcal (2) G-P(sol) polarization free energy of solvation -76.176 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.632 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.175 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.001 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.457 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds