Wall clock time and date at job start Fri Apr 10 2020 18:26:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81403 * 1 3 3 C 1.81397 * 102.99957 * 2 1 4 4 C 1.50700 * 109.47305 * 179.97438 * 3 2 1 5 5 C 1.38298 * 119.96787 * 269.97716 * 4 3 2 6 6 C 1.38261 * 120.13921 * 180.02562 * 5 4 3 7 7 C 1.38135 * 120.06958 * 359.67603 * 6 5 4 8 8 C 1.38840 * 119.92964 * 0.62458 * 7 6 5 9 9 N 1.39945 * 120.07141 * 179.67878 * 8 7 6 10 10 C 1.34779 * 119.99639 * 329.86478 * 9 8 7 11 11 O 1.21590 * 120.00263 * 4.87424 * 10 9 8 12 12 N 1.34781 * 119.99877 * 184.88347 * 10 9 8 13 13 C 1.46497 * 119.99727 * 359.97438 * 12 10 9 14 14 C 1.46496 * 119.99978 * 179.97438 * 12 10 9 15 15 H 1.09007 * 109.47070 * 0.02562 * 14 12 10 16 16 C 1.52996 * 109.47143 * 239.99600 * 14 12 10 17 17 C 1.50697 * 109.47124 * 119.99452 * 14 12 10 18 18 H 1.07998 * 120.00092 * 5.42432 * 17 14 12 19 19 C 1.37880 * 120.00203 * 185.41736 * 17 14 12 20 20 N 1.31513 * 119.99760 * 9.10274 * 19 17 14 21 21 Si 1.86796 * 120.00083 * 189.10802 * 19 17 14 22 22 H 1.48503 * 109.47497 * 84.99260 * 21 19 17 23 23 H 1.48504 * 109.47482 * 204.99093 * 21 19 17 24 24 H 1.48504 * 109.47557 * 324.99529 * 21 19 17 25 25 C 1.38100 * 119.96104 * 89.99784 * 4 3 2 26 26 C 1.50694 * 120.03458 * 359.97438 * 25 4 3 27 27 H 1.09002 * 109.46912 * 179.97438 * 1 2 3 28 28 H 1.08998 * 109.47228 * 300.00167 * 1 2 3 29 29 H 1.08995 * 109.46707 * 59.99991 * 1 2 3 30 30 H 1.09002 * 109.47488 * 59.99653 * 3 2 1 31 31 H 1.08997 * 109.47104 * 300.00032 * 3 2 1 32 32 H 1.08001 * 119.93085 * 0.02562 * 5 4 3 33 33 H 1.08002 * 119.96161 * 180.02562 * 6 5 4 34 34 H 1.08004 * 120.03300 * 180.30082 * 7 6 5 35 35 H 0.96999 * 120.00433 * 149.86695 * 9 8 7 36 36 H 1.09000 * 109.46994 * 269.99753 * 13 12 10 37 37 H 1.08993 * 109.47651 * 30.00486 * 13 12 10 38 38 H 1.09001 * 109.47069 * 150.00345 * 13 12 10 39 39 H 1.09001 * 109.46991 * 62.61528 * 16 14 12 40 40 H 1.09003 * 109.47321 * 182.60588 * 16 14 12 41 41 H 1.08991 * 109.47318 * 302.60773 * 16 14 12 42 42 H 0.97003 * 119.99783 * 179.97438 * 20 19 17 43 43 H 1.08997 * 109.47136 * 270.01569 * 26 25 4 44 44 H 1.08997 * 109.47515 * 30.02061 * 26 25 4 45 45 H 1.09004 * 109.47297 * 150.02313 * 26 25 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2221 1.7675 0.0000 4 6 3.7195 1.9374 0.0006 5 6 4.4053 2.0159 1.1990 6 6 5.7790 2.1723 1.2037 7 6 6.4716 2.2439 0.0107 8 6 5.7853 2.1718 -1.1941 9 7 6.4832 2.2508 -2.4045 10 6 7.6237 2.9651 -2.4793 11 8 8.0936 3.4671 -1.4765 12 7 8.2433 3.1230 -3.6658 13 6 7.6773 2.5179 -4.8739 14 6 9.4827 3.8999 -3.7472 15 1 9.7468 4.2677 -2.7556 16 6 9.2808 5.0844 -4.6942 17 6 10.5917 3.0230 -4.2689 18 1 10.3757 2.0172 -4.5976 19 6 11.8823 3.5049 -4.3266 20 7 12.1801 4.6562 -3.7649 21 14 13.2078 2.5225 -5.2026 22 1 13.1776 2.8348 -6.6541 23 1 14.5377 2.8800 -4.6470 24 1 12.9618 1.0716 -5.0034 25 6 4.4053 2.0150 -1.1955 26 6 3.6571 1.9293 -2.5008 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3633 0.5138 0.8899 29 1 -0.3632 0.5138 -0.8900 30 1 1.8031 2.2372 0.8899 31 1 1.8031 2.2371 -0.8900 32 1 3.8667 1.9548 2.1331 33 1 6.3118 2.2328 2.1413 34 1 7.5452 2.3613 0.0151 35 1 6.1462 1.7916 -3.1896 36 1 8.0832 1.5144 -5.0020 37 1 6.5930 2.4619 -4.7786 38 1 7.9348 3.1272 -5.7403 39 1 8.5106 5.7432 -4.2930 40 1 10.2161 5.6358 -4.7909 41 1 8.9720 4.7184 -5.6733 42 1 13.0881 4.9950 -3.8052 43 1 3.5928 0.8875 -2.8150 44 1 2.6528 2.3324 -2.3712 45 1 4.1848 2.5058 -3.2606 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000095964704.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:26:46 Heat of formation + Delta-G solvation = -14.159274 kcal Electronic energy + Delta-G solvation = -24976.340920 eV Core-core repulsion = 21505.678117 eV Total energy + Delta-G solvation = -3470.662804 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 322.146 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -41.85503 -40.12205 -37.37164 -36.05584 -34.74815 -34.29919 -32.14166 -30.80675 -29.75727 -28.30859 -27.66985 -27.29151 -27.23171 -24.21346 -22.22528 -22.15581 -20.58033 -19.32757 -18.51840 -17.89661 -17.21260 -17.00085 -16.83306 -16.60659 -16.27691 -15.76932 -15.38687 -14.93471 -14.75103 -14.56542 -14.46982 -14.30405 -14.27182 -13.98273 -13.65222 -13.57372 -13.50053 -13.11349 -13.01513 -12.88985 -12.85249 -12.77243 -12.56100 -12.32815 -12.25114 -12.07899 -11.97065 -11.43458 -11.24130 -10.98287 -10.76298 -10.49912 -9.50374 -9.47666 -8.88075 -8.61195 -8.16048 -6.29768 0.06814 0.39081 1.10299 1.41921 1.42788 1.52119 1.71334 1.76488 2.16102 2.42371 2.90855 3.04812 3.13392 3.63884 3.87342 4.00012 4.15412 4.25217 4.35137 4.41641 4.42518 4.46472 4.54910 4.60216 4.70561 4.73106 4.81762 4.84483 4.85016 4.90831 4.96158 4.96836 5.01340 5.23869 5.33355 5.42024 5.46452 5.56044 5.61483 5.61589 5.68890 5.93879 6.09777 6.12677 6.24198 6.78549 7.05573 7.36316 7.60932 8.90349 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.026109 B = 0.002650 C = 0.002570 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1072.170407 B =10565.154438 C =10894.359622 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 S -0.301 6.301 3 C -0.031 4.031 4 C -0.064 4.064 5 C -0.118 4.118 6 C -0.112 4.112 7 C -0.149 4.149 8 C 0.151 3.849 9 N -0.671 5.671 10 C 0.690 3.310 11 O -0.623 6.623 12 N -0.611 5.611 13 C 0.079 3.921 14 C 0.275 3.725 15 H 0.015 0.985 16 C -0.127 4.127 17 C -0.539 4.539 18 H 0.061 0.939 19 C 0.016 3.984 20 N -0.919 5.919 21 Si 0.964 3.036 22 H -0.265 1.265 23 H -0.288 1.288 24 H -0.271 1.271 25 C -0.101 4.101 26 C -0.113 4.113 27 H 0.107 0.893 28 H 0.087 0.913 29 H 0.088 0.912 30 H 0.105 0.895 31 H 0.107 0.893 32 H 0.147 0.853 33 H 0.136 0.864 34 H 0.113 0.887 35 H 0.417 0.583 36 H 0.056 0.944 37 H 0.086 0.914 38 H 0.082 0.918 39 H 0.023 0.977 40 H 0.052 0.948 41 H 0.057 0.943 42 H 0.264 0.736 43 H 0.086 0.914 44 H 0.088 0.912 45 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.555 -7.797 2.947 26.880 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.283 4.283 2 S -0.074 6.074 3 C -0.178 4.178 4 C -0.066 4.066 5 C -0.139 4.139 6 C -0.131 4.131 7 C -0.170 4.170 8 C 0.056 3.944 9 N -0.321 5.321 10 C 0.392 3.608 11 O -0.505 6.505 12 N -0.345 5.345 13 C -0.063 4.063 14 C 0.173 3.827 15 H 0.033 0.967 16 C -0.185 4.185 17 C -0.578 4.578 18 H 0.079 0.921 19 C -0.184 4.184 20 N -0.558 5.558 21 Si 0.789 3.211 22 H -0.190 1.190 23 H -0.214 1.214 24 H -0.196 1.196 25 C -0.106 4.106 26 C -0.169 4.169 27 H 0.126 0.874 28 H 0.106 0.894 29 H 0.107 0.893 30 H 0.124 0.876 31 H 0.126 0.874 32 H 0.165 0.835 33 H 0.154 0.846 34 H 0.131 0.869 35 H 0.257 0.743 36 H 0.075 0.925 37 H 0.105 0.895 38 H 0.100 0.900 39 H 0.042 0.958 40 H 0.071 0.929 41 H 0.076 0.924 42 H 0.073 0.927 43 H 0.104 0.896 44 H 0.107 0.893 45 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -24.398 -8.176 3.552 25.976 hybrid contribution 0.640 0.659 -0.503 1.048 sum -23.758 -7.517 3.049 25.104 Atomic orbital electron populations 1.23456 0.91510 1.07305 1.05988 1.87480 1.10092 1.11610 1.98180 1.22291 0.93927 0.94336 1.07222 1.19014 0.94119 1.01239 0.92221 1.21186 0.93645 1.00702 0.98353 1.21177 0.94893 0.99624 0.97385 1.21524 1.00997 1.01945 0.92553 1.17582 0.90749 1.01098 0.84991 1.42584 1.24253 1.52776 1.12502 1.16187 0.80671 0.79690 0.84233 1.90811 1.67694 1.56142 1.35805 1.47465 1.26422 1.54435 1.06139 1.21806 0.98117 0.98790 0.87588 1.18496 0.79477 0.89026 0.95685 0.96746 1.21825 0.99726 0.97761 0.99238 1.21550 0.92949 1.00083 1.43181 0.92058 1.25750 1.00570 0.96360 0.95738 1.70114 1.20612 1.21607 1.43425 0.85494 0.77728 0.78748 0.79176 1.18951 1.21389 1.19613 1.19632 0.90165 1.03502 0.97306 1.20831 1.00321 1.03361 0.92384 0.87428 0.89433 0.89328 0.87647 0.87445 0.83494 0.84565 0.86934 0.74266 0.92532 0.89537 0.89981 0.95765 0.92892 0.92365 0.92667 0.89593 0.89331 0.91714 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.98 10.76 113.37 1.22 0.24 16 2 S -0.30 -4.97 22.36 -56.49 -1.26 -6.23 16 3 C -0.03 -0.46 5.66 71.24 0.40 -0.06 16 4 C -0.06 -1.40 5.14 -19.88 -0.10 -1.50 16 5 C -0.12 -2.72 9.70 22.29 0.22 -2.50 16 6 C -0.11 -3.19 10.04 22.25 0.22 -2.97 16 7 C -0.15 -5.36 8.74 22.39 0.20 -5.17 16 8 C 0.15 4.92 6.37 38.15 0.24 5.17 16 9 N -0.67 -22.30 4.70 -317.17 -1.49 -23.79 16 10 C 0.69 30.36 8.15 179.05 1.46 31.82 16 11 O -0.62 -33.35 12.80 -4.00 -0.05 -33.40 16 12 N -0.61 -26.26 2.75 -844.86 -2.33 -28.59 16 13 C 0.08 2.43 9.35 127.77 1.19 3.62 16 14 C 0.28 14.46 2.50 44.24 0.11 14.57 16 15 H 0.01 0.93 6.85 -2.38 -0.02 0.91 16 16 C -0.13 -5.99 9.09 71.98 0.65 -5.33 16 17 C -0.54 -29.49 8.33 25.60 0.21 -29.27 16 18 H 0.06 3.25 7.53 -2.91 -0.02 3.23 16 19 C 0.02 0.87 5.19 84.66 0.44 1.31 16 20 N -0.92 -54.25 12.14 21.45 0.26 -53.99 16 21 Si 0.96 43.33 29.55 68.60 2.03 45.36 16 22 H -0.26 -11.22 7.11 99.48 0.71 -10.51 16 23 H -0.29 -12.95 7.11 99.48 0.71 -12.24 16 24 H -0.27 -11.94 7.11 99.48 0.71 -11.23 16 25 C -0.10 -2.50 5.90 -19.74 -0.12 -2.62 16 26 C -0.11 -1.96 9.05 71.23 0.64 -1.32 16 27 H 0.11 0.79 8.14 -2.39 -0.02 0.77 16 28 H 0.09 0.57 8.14 -2.39 -0.02 0.55 16 29 H 0.09 0.56 8.14 -2.39 -0.02 0.54 16 30 H 0.11 1.23 8.08 -2.39 -0.02 1.21 16 31 H 0.11 1.27 5.95 -2.39 -0.01 1.26 16 32 H 0.15 2.51 8.06 -2.91 -0.02 2.49 16 33 H 0.14 3.35 8.06 -2.91 -0.02 3.33 16 34 H 0.11 4.97 5.83 -2.91 -0.02 4.96 16 35 H 0.42 10.70 5.43 -92.71 -0.50 10.20 16 36 H 0.06 1.67 8.09 -2.39 -0.02 1.65 16 37 H 0.09 1.90 6.44 -2.39 -0.02 1.88 16 38 H 0.08 2.46 6.38 -2.39 -0.02 2.44 16 39 H 0.02 1.06 8.14 -2.39 -0.02 1.04 16 40 H 0.05 2.76 6.83 -2.39 -0.02 2.74 16 41 H 0.06 2.40 6.56 -2.39 -0.02 2.38 16 42 H 0.26 14.77 8.31 -92.71 -0.77 14.00 16 43 H 0.09 1.34 8.14 -2.39 -0.02 1.32 16 44 H 0.09 1.18 5.95 -2.39 -0.01 1.17 16 45 H 0.06 1.12 7.08 -2.38 -0.02 1.11 16 Total: -1.00 -74.13 371.69 4.66 -69.47 By element: Atomic # 1 Polarization: 24.68 SS G_CDS: 0.50 Total: 25.18 kcal Atomic # 6 Polarization: -1.01 SS G_CDS: 7.00 Total: 5.99 kcal Atomic # 7 Polarization: -102.82 SS G_CDS: -3.56 Total: -106.37 kcal Atomic # 8 Polarization: -33.35 SS G_CDS: -0.05 Total: -33.40 kcal Atomic # 14 Polarization: 43.33 SS G_CDS: 2.03 Total: 45.36 kcal Atomic # 16 Polarization: -4.97 SS G_CDS: -1.26 Total: -6.23 kcal Total: -74.13 4.66 -69.47 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000095964704.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.312 kcal (2) G-P(sol) polarization free energy of solvation -74.126 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.815 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.655 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.471 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.159 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds