Wall clock time and date at job start Fri Apr 10 2020 18:26:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 N 1.46500 * 109.47120 * 2 1 4 4 C 1.46503 * 119.99570 * 269.99432 * 3 2 1 5 5 C 1.50694 * 109.47143 * 270.00492 * 4 3 2 6 6 H 1.07998 * 120.00206 * 359.97438 * 5 4 3 7 7 C 1.37885 * 119.99767 * 180.02562 * 5 4 3 8 8 N 1.31509 * 120.00064 * 359.97438 * 7 5 4 9 9 Si 1.86797 * 119.99606 * 179.97438 * 7 5 4 10 10 H 1.48500 * 109.47778 * 59.99797 * 9 7 5 11 11 H 1.48510 * 109.47052 * 179.97438 * 9 7 5 12 12 H 1.48504 * 109.47415 * 299.99671 * 9 7 5 13 13 C 1.34769 * 120.00466 * 90.00036 * 3 2 1 14 14 O 1.21588 * 120.00191 * 180.02562 * 13 3 2 15 15 N 1.34777 * 119.99797 * 0.26957 * 13 3 2 16 16 C 1.40199 * 120.00009 * 174.32421 * 15 13 3 17 17 C 1.38624 * 120.09654 * 33.56830 * 16 15 13 18 18 C 1.38263 * 120.00910 * 180.02562 * 17 16 15 19 19 C 1.38288 * 120.20767 * 0.02562 * 18 17 16 20 20 C 1.38211 * 120.19610 * 0.02562 * 19 18 17 21 21 C 1.38775 * 119.98409 * 359.67852 * 20 19 18 22 22 S 1.76199 * 120.10286 * 180.29698 * 21 20 19 23 23 C 1.81398 * 103.00071 * 359.83837 * 22 21 20 24 24 C 1.52998 * 109.47511 * 166.30467 * 23 22 21 25 25 C 1.53006 * 109.46927 * 286.30278 * 23 22 21 26 26 H 1.08998 * 109.46871 * 60.00060 * 1 2 3 27 27 H 1.09000 * 109.47461 * 180.02562 * 1 2 3 28 28 H 1.08998 * 109.47262 * 300.00608 * 1 2 3 29 29 H 1.08995 * 109.46589 * 239.99104 * 2 1 3 30 30 H 1.09006 * 109.46772 * 119.99652 * 2 1 3 31 31 H 1.09000 * 109.47097 * 30.00251 * 4 3 2 32 32 H 1.08996 * 109.46651 * 149.99916 * 4 3 2 33 33 H 0.97004 * 119.99682 * 180.02562 * 8 7 5 34 34 H 0.97005 * 120.00190 * 354.32726 * 15 13 3 35 35 H 1.08002 * 119.99715 * 359.97438 * 17 16 15 36 36 H 1.08003 * 119.89921 * 180.02562 * 18 17 16 37 37 H 1.08003 * 119.90511 * 179.97438 * 19 18 17 38 38 H 1.07999 * 120.00942 * 179.97438 * 20 19 18 39 39 H 1.08998 * 109.47372 * 46.29392 * 23 22 21 40 40 H 1.08997 * 109.47181 * 59.99260 * 24 23 22 41 41 H 1.09003 * 109.47077 * 180.02562 * 24 23 22 42 42 H 1.09005 * 109.46877 * 299.99366 * 24 23 22 43 43 H 1.09000 * 109.47533 * 64.37844 * 25 23 22 44 44 H 1.09001 * 109.47308 * 184.38131 * 25 23 22 45 45 H 1.09006 * 109.47106 * 304.38077 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.2626 2.0717 -1.2688 5 6 3.6859 1.8348 -1.7038 6 1 4.3429 1.2307 -1.0957 7 6 4.1495 2.3902 -2.8776 8 7 3.3496 3.1262 -3.6177 9 14 5.9139 2.0970 -3.4163 10 1 6.1419 0.6404 -3.5941 11 1 6.1615 2.7969 -4.7026 12 1 6.8411 2.6204 -2.3811 13 6 2.2430 2.0166 1.1671 14 8 2.6479 3.1631 1.1670 15 7 2.0236 1.3795 2.3343 16 6 2.3690 1.9960 3.5452 17 6 2.2659 3.3719 3.6789 18 6 2.6075 3.9781 4.8737 19 6 3.0530 3.2160 5.9381 20 6 3.1600 1.8437 5.8139 21 6 2.8135 1.2262 4.6203 22 16 2.9413 -0.5239 4.4611 23 6 3.5600 -1.0375 6.0871 24 6 3.4069 -2.5526 6.2358 25 6 5.0372 -0.6594 6.2133 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3634 -1.0276 0.0005 28 1 -0.3634 0.5139 0.8899 29 1 1.8933 -0.5140 -0.8899 30 1 1.8933 -0.5138 0.8901 31 1 1.5819 1.6875 -2.0284 32 1 2.0956 3.1409 -1.1385 33 1 3.6757 3.5166 -4.4437 34 1 1.6268 0.4943 2.3366 35 1 1.9196 3.9706 2.8494 36 1 2.5262 5.0502 4.9760 37 1 3.3189 3.6947 6.8691 38 1 3.5087 1.2514 6.6470 39 1 2.9887 -0.5361 6.8682 40 1 3.9782 -3.0539 5.4546 41 1 3.7783 -2.8611 7.2131 42 1 2.3545 -2.8219 6.1459 43 1 5.1383 0.4255 6.1853 44 1 5.4294 -1.0366 7.1578 45 1 5.5964 -1.0979 5.3867 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000096474190.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:26:59 Heat of formation + Delta-G solvation = -2.514155 kcal Electronic energy + Delta-G solvation = -25209.619080 eV Core-core repulsion = 21739.461247 eV Total energy + Delta-G solvation = -3470.157834 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 322.146 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -40.23814 -38.43389 -35.53337 -35.18649 -34.30156 -32.67311 -30.97435 -30.13286 -29.41077 -27.52951 -26.80598 -23.53633 -23.04877 -22.86385 -22.41494 -21.35611 -19.30333 -18.09278 -17.10801 -16.91252 -16.38325 -16.15333 -15.20337 -15.00480 -14.86498 -14.52266 -14.34324 -14.00163 -13.89312 -13.56232 -13.35332 -13.03380 -12.93877 -12.57363 -12.46454 -12.33295 -12.04579 -11.72447 -11.71956 -11.64948 -11.60461 -11.18304 -10.99779 -10.92825 -10.75678 -10.50659 -10.19976 -10.09440 -10.03285 -9.64580 -9.58022 -9.17512 -8.40131 -8.17296 -7.67958 -7.21975 -6.01374 -4.05579 1.30275 1.40938 1.50841 2.33949 3.19522 3.34816 3.38746 3.43452 3.68111 4.04092 4.38835 4.43808 4.52135 4.52438 4.83867 4.92875 5.13121 5.25527 5.28782 5.32464 5.34425 5.37799 5.43444 5.50866 5.57189 5.59045 5.66043 5.69584 5.77936 5.89385 5.94991 6.01355 6.21058 6.31394 6.37178 6.47537 6.62159 6.76835 6.84184 7.22388 7.36972 7.52751 7.68554 7.96686 8.26344 8.58974 8.94934 9.24617 9.59600 11.06523 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.012832 B = 0.003671 C = 0.003543 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2181.467674 B = 7625.013714 C = 7901.829840 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.105 3.895 3 N -0.604 5.604 4 C 0.261 3.739 5 C -0.526 4.526 6 H 0.057 0.943 7 C 0.062 3.938 8 N -0.896 5.896 9 Si 0.897 3.103 10 H -0.277 1.277 11 H -0.286 1.286 12 H -0.277 1.277 13 C 0.700 3.300 14 O -0.568 6.568 15 N -0.691 5.691 16 C 0.203 3.797 17 C -0.109 4.109 18 C -0.103 4.103 19 C -0.131 4.131 20 C -0.119 4.119 21 C -0.122 4.122 22 S -0.121 6.121 23 C -0.079 4.079 24 C -0.133 4.133 25 C -0.153 4.153 26 H 0.063 0.937 27 H 0.061 0.939 28 H 0.049 0.951 29 H 0.087 0.913 30 H 0.059 0.941 31 H 0.034 0.966 32 H 0.045 0.955 33 H 0.263 0.737 34 H 0.403 0.597 35 H 0.152 0.848 36 H 0.125 0.875 37 H 0.121 0.879 38 H 0.125 0.875 39 H 0.092 0.908 40 H 0.066 0.934 41 H 0.072 0.928 42 H 0.066 0.934 43 H 0.065 0.935 44 H 0.064 0.936 45 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.727 -9.209 20.972 23.206 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C -0.020 4.020 3 N -0.339 5.339 4 C 0.142 3.858 5 C -0.565 4.565 6 H 0.075 0.925 7 C -0.140 4.140 8 N -0.535 5.535 9 Si 0.725 3.275 10 H -0.203 1.203 11 H -0.212 1.212 12 H -0.202 1.202 13 C 0.402 3.598 14 O -0.444 6.444 15 N -0.341 5.341 16 C 0.100 3.900 17 C -0.131 4.131 18 C -0.124 4.124 19 C -0.152 4.152 20 C -0.143 4.143 21 C -0.237 4.237 22 S 0.121 5.879 23 C -0.208 4.208 24 C -0.192 4.192 25 C -0.212 4.212 26 H 0.083 0.917 27 H 0.080 0.920 28 H 0.068 0.932 29 H 0.106 0.894 30 H 0.077 0.923 31 H 0.052 0.948 32 H 0.063 0.937 33 H 0.073 0.927 34 H 0.240 0.760 35 H 0.169 0.831 36 H 0.143 0.857 37 H 0.139 0.861 38 H 0.143 0.857 39 H 0.111 0.889 40 H 0.085 0.915 41 H 0.090 0.910 42 H 0.085 0.915 43 H 0.084 0.916 44 H 0.083 0.917 45 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -3.679 -9.114 19.700 22.015 hybrid contribution 1.137 0.231 0.669 1.340 sum -2.541 -8.883 20.369 22.366 Atomic orbital electron populations 1.22254 0.96649 1.01568 1.02477 1.21401 0.93564 0.84331 1.02681 1.47610 1.66870 1.13228 1.06155 1.19226 0.96225 0.93460 0.76858 1.21427 0.96981 1.31897 1.06206 0.92524 1.24908 0.97792 0.94915 0.96366 1.69919 1.35706 1.33468 1.14379 0.86570 0.84911 0.78235 0.77769 1.20275 1.21189 1.20208 1.15897 0.79041 0.84832 0.80001 1.90864 1.51776 1.16359 1.85423 1.43047 1.65960 1.21418 1.03642 1.17078 0.96991 0.91822 0.84067 1.21482 1.00082 0.93095 0.98411 1.21110 0.98792 0.99907 0.92587 1.20926 1.02027 0.93224 0.99040 1.20925 1.02183 0.95410 0.95736 1.21363 1.08047 0.96585 0.97746 1.85326 1.82934 0.99461 1.20173 1.23336 1.00085 1.00535 0.96840 1.21621 1.03054 0.91820 1.02689 1.22199 0.93610 1.02654 1.02733 0.91742 0.91980 0.93182 0.89420 0.92294 0.94768 0.93731 0.92692 0.75972 0.83080 0.85710 0.86128 0.85731 0.88947 0.91524 0.90958 0.91499 0.91609 0.91737 0.91130 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.35 10.24 37.16 0.38 -1.97 16 2 C 0.10 1.74 5.85 -4.04 -0.02 1.71 16 3 N -0.60 -13.09 2.46 -180.80 -0.44 -13.54 16 4 C 0.26 6.87 5.16 -5.19 -0.03 6.84 16 5 C -0.53 -15.11 9.39 -34.44 -0.32 -15.43 16 6 H 0.06 1.65 7.81 -52.49 -0.41 1.24 16 7 C 0.06 1.79 5.46 -17.82 -0.10 1.70 16 8 N -0.90 -26.72 13.29 55.43 0.74 -25.99 16 9 Si 0.90 22.21 29.54 -169.99 -5.02 17.19 16 10 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 11 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 12 H -0.28 -6.92 7.11 56.52 0.40 -6.52 16 13 C 0.70 15.40 8.14 -86.92 -0.71 14.69 16 14 O -0.57 -14.60 13.25 5.29 0.07 -14.53 16 15 N -0.69 -12.25 4.88 -14.07 -0.07 -12.32 16 16 C 0.20 3.44 6.34 -83.42 -0.53 2.91 16 17 C -0.11 -1.84 8.72 -39.43 -0.34 -2.18 16 18 C -0.10 -1.41 10.04 -39.55 -0.40 -1.81 16 19 C -0.13 -1.57 10.04 -39.57 -0.40 -1.97 16 20 C -0.12 -1.46 8.27 -39.39 -0.33 -1.78 16 21 C -0.12 -1.75 6.11 -38.91 -0.24 -1.99 16 22 S -0.12 -1.50 20.14 -107.50 -2.17 -3.66 16 23 C -0.08 -0.69 2.59 -26.73 -0.07 -0.76 16 24 C -0.13 -0.94 9.20 37.16 0.34 -0.59 16 25 C -0.15 -1.31 8.81 37.16 0.33 -0.98 16 26 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16 27 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 28 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 29 H 0.09 1.49 8.07 -51.93 -0.42 1.07 16 30 H 0.06 0.86 6.44 -51.93 -0.33 0.53 16 31 H 0.03 0.90 8.07 -51.93 -0.42 0.48 16 32 H 0.04 1.32 7.42 -51.93 -0.39 0.93 16 33 H 0.26 7.45 8.31 -40.82 -0.34 7.11 16 34 H 0.40 6.20 5.73 -40.82 -0.23 5.96 16 35 H 0.15 2.89 6.08 -52.49 -0.32 2.57 16 36 H 0.12 1.41 8.06 -52.48 -0.42 0.99 16 37 H 0.12 1.09 8.06 -52.48 -0.42 0.67 16 38 H 0.12 1.22 4.65 -52.49 -0.24 0.98 16 39 H 0.09 0.75 6.87 -51.92 -0.36 0.39 16 40 H 0.07 0.50 8.14 -51.93 -0.42 0.07 16 41 H 0.07 0.39 8.14 -51.93 -0.42 -0.04 16 42 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 43 H 0.06 0.63 6.05 -51.93 -0.31 0.31 16 44 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 45 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 LS Contribution 375.97 15.07 5.67 5.67 Total: -1.00 -33.07 375.97 -10.45 -43.52 By element: Atomic # 1 Polarization: 12.08 SS G_CDS: -6.80 Total: 5.28 kcal Atomic # 6 Polarization: 0.80 SS G_CDS: -2.43 Total: -1.62 kcal Atomic # 7 Polarization: -52.07 SS G_CDS: 0.22 Total: -51.84 kcal Atomic # 8 Polarization: -14.60 SS G_CDS: 0.07 Total: -14.53 kcal Atomic # 14 Polarization: 22.21 SS G_CDS: -5.02 Total: 17.19 kcal Atomic # 16 Polarization: -1.50 SS G_CDS: -2.17 Total: -3.66 kcal Total LS contribution 5.67 Total: 5.67 kcal Total: -33.07 -10.45 -43.52 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000096474190.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.007 kcal (2) G-P(sol) polarization free energy of solvation -33.068 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.939 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.454 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.522 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.514 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds