Wall clock time and date at job start Fri Apr 10 2020 18:27:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45198 * 1 3 3 C 1.34755 * 117.00311 * 2 1 4 4 O 1.21519 * 119.99767 * 0.02562 * 3 2 1 5 5 C 1.47388 * 120.00112 * 179.97438 * 3 2 1 6 6 C 1.36656 * 125.78094 * 179.97438 * 5 3 2 7 7 N 1.34783 * 106.83577 * 180.02562 * 6 5 3 8 8 C 1.46503 * 126.58474 * 180.02562 * 7 6 5 9 9 C 1.50701 * 109.46983 * 124.98589 * 8 7 6 10 10 O 1.21280 * 120.00294 * 359.97438 * 9 8 7 11 11 N 1.34783 * 119.99907 * 180.02562 * 9 8 7 12 12 C 1.46499 * 120.00011 * 180.02562 * 11 9 8 13 13 C 1.50700 * 109.47460 * 89.99236 * 12 11 9 14 14 H 1.08005 * 119.99738 * 0.02562 * 13 12 11 15 15 C 1.37871 * 119.99869 * 179.97438 * 13 12 11 16 16 N 1.31508 * 120.00449 * 0.02562 * 15 13 12 17 17 Si 1.86806 * 119.99835 * 180.02562 * 15 13 12 18 18 H 1.48499 * 109.46922 * 359.97438 * 17 15 13 19 19 H 1.48498 * 109.47132 * 120.00369 * 17 15 13 20 20 H 1.48501 * 109.47232 * 240.00125 * 17 15 13 21 21 C 1.46500 * 119.99960 * 359.97438 * 11 9 8 22 22 C 1.52994 * 109.47272 * 90.00372 * 21 11 9 23 23 C 1.52995 * 117.50106 * 243.62532 * 22 21 11 24 24 C 1.52994 * 117.50269 * 174.99878 * 22 21 11 25 25 N 1.40202 * 106.83032 * 0.02562 * 7 6 5 26 26 N 1.28764 * 108.38062 * 359.97438 * 25 7 6 27 27 H 1.08997 * 109.47509 * 179.97438 * 1 2 3 28 28 H 1.09001 * 109.46975 * 299.99991 * 1 2 3 29 29 H 1.08997 * 109.46966 * 59.99271 * 1 2 3 30 30 H 1.08001 * 126.58261 * 0.04755 * 6 5 3 31 31 H 1.09004 * 109.46919 * 244.98384 * 8 7 6 32 32 H 1.08995 * 109.47262 * 4.98110 * 8 7 6 33 33 H 1.08997 * 109.47270 * 209.99830 * 12 11 9 34 34 H 1.09008 * 109.46949 * 329.99418 * 12 11 9 35 35 H 0.97001 * 120.00778 * 179.97438 * 16 15 13 36 36 H 1.09003 * 109.47154 * 210.00168 * 21 11 9 37 37 H 1.09001 * 109.47124 * 330.00571 * 21 11 9 38 38 H 1.09006 * 115.54718 * 29.32557 * 22 21 11 39 39 H 1.08999 * 117.49933 * 359.97438 * 23 22 21 40 40 H 1.09003 * 117.50745 * 145.02158 * 23 22 21 41 41 H 1.09001 * 117.50193 * 214.98191 * 24 22 21 42 42 H 1.09005 * 117.50074 * 359.97438 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0638 1.2006 0.0000 4 8 1.4020 2.2198 0.0005 5 6 3.5357 1.2777 0.0006 6 6 4.2756 2.4266 0.0001 7 7 5.5716 2.0563 0.0003 8 6 6.7343 2.9475 0.0006 9 6 7.6284 2.6065 1.1648 10 8 7.3241 1.7078 1.9202 11 7 8.7658 3.3008 1.3671 12 6 9.6352 2.9689 2.4985 13 6 10.6418 1.9319 2.0714 14 1 10.6348 1.5578 1.0582 15 6 11.5721 1.4616 2.9736 16 7 11.5809 1.9174 4.2071 17 14 12.8203 0.1766 2.4439 18 1 12.5998 -0.1688 1.0166 19 1 14.1921 0.7184 2.6165 20 1 12.6608 -1.0418 3.2778 21 6 9.1331 4.3867 0.4549 22 6 8.5415 5.7026 0.9640 23 6 7.5024 6.3979 0.0822 24 6 8.9109 6.9817 0.2102 25 7 5.5932 0.6545 0.0003 26 7 4.3776 0.2297 0.0007 27 1 -0.3634 -1.0276 -0.0005 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5139 -0.8899 30 1 3.8950 3.4374 0.0000 31 1 7.2872 2.8236 -0.9307 32 1 6.4000 3.9811 0.0898 33 1 10.1568 3.8662 2.8313 34 1 9.0323 2.5747 3.3166 35 1 12.2352 1.5863 4.8420 36 1 10.2189 4.4705 0.4083 37 1 8.7421 4.1734 -0.5400 38 1 8.4141 5.7739 2.0442 39 1 7.2406 5.9182 -0.8608 40 1 6.6910 6.9270 0.5821 41 1 9.0261 7.8947 0.7944 42 1 9.5758 6.8859 -0.6483 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000266991506.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:27:49 Heat of formation + Delta-G solvation = 16.221205 kcal Electronic energy + Delta-G solvation = -26838.238675 eV Core-core repulsion = 22822.600053 eV Total energy + Delta-G solvation = -4015.638622 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 322.147 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -42.28565 -40.23736 -39.45474 -37.42493 -36.58316 -34.86405 -34.38665 -32.64486 -31.25777 -29.41371 -27.99860 -27.51327 -26.12080 -23.95285 -23.40270 -22.51033 -22.08968 -21.06609 -20.87270 -19.13587 -18.01785 -17.28322 -17.18350 -16.63110 -16.57669 -16.38495 -15.61794 -15.34500 -15.00823 -14.89089 -14.68285 -14.17258 -14.09328 -13.87981 -13.43397 -13.09139 -12.87381 -12.44392 -12.42589 -12.12942 -11.94094 -11.70574 -11.61389 -11.33818 -11.26857 -10.97156 -10.95706 -10.84438 -10.76580 -10.65970 -10.48944 -10.20662 -10.05415 -9.71587 -9.44075 -9.15151 -8.50752 -7.92884 -6.12040 -4.17174 0.95273 1.54759 1.82809 2.55923 2.94309 2.97427 3.26822 3.35538 3.37973 3.48272 3.72126 4.11139 4.28925 4.40963 4.50871 4.56733 4.75065 4.77263 4.80918 4.83618 4.91331 4.99311 5.03233 5.21113 5.23959 5.26568 5.32206 5.47698 5.62378 5.64480 5.78515 5.87244 5.98729 6.11803 6.13499 6.25634 6.84372 7.25756 7.34488 7.48852 7.83150 8.00573 8.09112 8.12479 8.65698 8.88118 9.48578 10.96272 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.012132 B = 0.003327 C = 0.002733 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2307.478519 B = 8412.770093 C =10242.907690 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.036 3.964 2 O -0.339 6.339 3 C 0.563 3.437 4 O -0.511 6.511 5 C -0.099 4.099 6 C 0.102 3.898 7 N -0.340 5.340 8 C 0.095 3.905 9 C 0.496 3.504 10 O -0.508 6.508 11 N -0.587 5.587 12 C 0.248 3.752 13 C -0.529 4.529 14 H 0.059 0.941 15 C 0.063 3.937 16 N -0.893 5.893 17 Si 0.899 3.101 18 H -0.272 1.272 19 H -0.283 1.283 20 H -0.282 1.282 21 C 0.136 3.864 22 C -0.170 4.170 23 C -0.192 4.192 24 C -0.171 4.171 25 N -0.014 5.014 26 N -0.192 5.192 27 H 0.103 0.897 28 H 0.064 0.936 29 H 0.063 0.937 30 H 0.207 0.793 31 H 0.125 0.875 32 H 0.130 0.870 33 H 0.037 0.963 34 H 0.044 0.956 35 H 0.264 0.736 36 H 0.095 0.905 37 H 0.066 0.934 38 H 0.111 0.889 39 H 0.092 0.908 40 H 0.093 0.907 41 H 0.094 0.906 42 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.800 8.526 -11.742 20.727 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 O -0.254 6.254 3 C 0.406 3.594 4 O -0.399 6.399 5 C -0.235 4.235 6 C -0.055 4.055 7 N -0.122 5.122 8 C -0.030 4.030 9 C 0.279 3.721 10 O -0.382 6.382 11 N -0.318 5.318 12 C 0.130 3.870 13 C -0.568 4.568 14 H 0.077 0.923 15 C -0.140 4.140 16 N -0.532 5.532 17 Si 0.726 3.274 18 H -0.197 1.197 19 H -0.210 1.210 20 H -0.208 1.208 21 C 0.012 3.988 22 C -0.189 4.189 23 C -0.229 4.229 24 C -0.209 4.209 25 N 0.004 4.996 26 N -0.067 5.067 27 H 0.122 0.878 28 H 0.083 0.917 29 H 0.082 0.918 30 H 0.224 0.776 31 H 0.143 0.857 32 H 0.148 0.852 33 H 0.055 0.945 34 H 0.062 0.938 35 H 0.073 0.927 36 H 0.113 0.887 37 H 0.085 0.915 38 H 0.130 0.870 39 H 0.111 0.889 40 H 0.111 0.889 41 H 0.112 0.888 42 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -14.158 7.084 -11.128 19.351 hybrid contribution 0.138 0.527 -0.161 0.569 sum -14.020 7.612 -11.289 19.543 Atomic orbital electron populations 1.23327 0.75882 1.03950 1.02585 1.86664 1.23339 1.31667 1.83730 1.19423 0.86163 0.81713 0.72062 1.90861 1.65799 1.35976 1.47223 1.20090 0.92369 0.89954 1.21136 1.23233 0.83490 1.01202 0.97599 1.50058 1.05636 1.08230 1.48299 1.22158 0.85463 0.93019 1.02333 1.19867 0.82532 0.83707 0.86021 1.90811 1.72260 1.29128 1.46048 1.48177 1.21363 1.32030 1.30279 1.19370 0.88252 0.96354 0.83055 1.21419 1.14389 1.23234 0.97746 0.92268 1.24920 0.97703 0.96614 0.94724 1.69927 1.36115 1.43390 1.03788 0.86432 0.80648 0.81425 0.78880 1.19706 1.20955 1.20794 1.21133 1.01779 0.84282 0.91609 1.22978 1.02993 0.93639 0.99293 1.23117 0.93169 1.05113 1.01522 1.22889 0.97854 0.97119 1.03000 1.82344 1.12583 0.85661 1.18993 1.74840 0.96830 1.25612 1.09445 0.87822 0.91709 0.91777 0.77629 0.85748 0.85211 0.94523 0.93758 0.92663 0.88672 0.91535 0.87048 0.88915 0.88880 0.88791 0.88555 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.30 10.57 101.05 1.07 1.37 16 2 O -0.34 -4.32 10.57 -40.64 -0.43 -4.75 16 3 C 0.56 7.72 7.96 34.45 0.27 8.00 16 4 O -0.51 -7.21 16.65 -19.28 -0.32 -7.53 16 5 C -0.10 -1.45 7.02 -83.57 -0.59 -2.04 16 6 C 0.10 1.24 11.27 -16.83 -0.19 1.05 16 7 N -0.34 -4.91 3.41 -62.23 -0.21 -5.12 16 8 C 0.10 1.17 5.57 -5.19 -0.03 1.14 16 9 C 0.50 9.22 7.71 -10.98 -0.08 9.14 16 10 O -0.51 -12.28 15.31 5.56 0.09 -12.20 16 11 N -0.59 -10.87 2.46 -175.06 -0.43 -11.30 16 12 C 0.25 6.04 5.16 -5.19 -0.03 6.01 16 13 C -0.53 -14.35 9.39 -34.44 -0.32 -14.67 16 14 H 0.06 1.61 7.81 -52.48 -0.41 1.20 16 15 C 0.06 1.75 5.46 -17.82 -0.10 1.65 16 16 N -0.89 -25.91 13.29 55.43 0.74 -25.18 16 17 Si 0.90 21.53 29.54 -169.99 -5.02 16.51 16 18 H -0.27 -6.44 7.11 56.52 0.40 -6.04 16 19 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 20 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 21 C 0.14 1.80 5.49 -4.05 -0.02 1.77 16 22 C -0.17 -1.87 5.95 -90.63 -0.54 -2.41 16 23 C -0.19 -1.53 9.18 -26.73 -0.25 -1.78 16 24 C -0.17 -1.50 10.25 -26.73 -0.27 -1.78 16 25 N -0.01 -0.26 12.89 60.35 0.78 0.52 16 26 N -0.19 -3.35 12.39 32.83 0.41 -2.95 16 27 H 0.10 0.58 8.14 -51.93 -0.42 0.16 16 28 H 0.06 0.51 8.14 -51.93 -0.42 0.08 16 29 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 30 H 0.21 1.55 8.06 -52.49 -0.42 1.13 16 31 H 0.12 1.22 7.40 -51.93 -0.38 0.84 16 32 H 0.13 1.07 6.78 -51.93 -0.35 0.72 16 33 H 0.04 0.90 8.07 -51.93 -0.42 0.48 16 34 H 0.04 1.24 7.42 -51.92 -0.39 0.86 16 35 H 0.26 7.24 8.31 -40.82 -0.34 6.90 16 36 H 0.10 1.36 8.07 -51.93 -0.42 0.94 16 37 H 0.07 0.66 6.17 -51.93 -0.32 0.34 16 38 H 0.11 1.45 8.14 -51.93 -0.42 1.03 16 39 H 0.09 0.58 7.87 -51.93 -0.41 0.18 16 40 H 0.09 0.69 8.14 -51.93 -0.42 0.27 16 41 H 0.09 0.79 8.14 -51.93 -0.42 0.36 16 42 H 0.10 0.77 8.14 -51.93 -0.42 0.34 16 LS Contribution 371.75 15.07 5.60 5.60 Total: -1.00 -36.26 371.75 -5.50 -41.76 By element: Atomic # 1 Polarization: 2.81 SS G_CDS: -5.62 Total: -2.81 kcal Atomic # 6 Polarization: 8.52 SS G_CDS: -1.08 Total: 7.45 kcal Atomic # 7 Polarization: -45.31 SS G_CDS: 1.28 Total: -44.03 kcal Atomic # 8 Polarization: -23.81 SS G_CDS: -0.67 Total: -24.47 kcal Atomic # 14 Polarization: 21.53 SS G_CDS: -5.02 Total: 16.51 kcal Total LS contribution 5.60 Total: 5.60 kcal Total: -36.26 -5.50 -41.76 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000266991506.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.979 kcal (2) G-P(sol) polarization free energy of solvation -36.259 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.719 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.498 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.757 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.221 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds