Wall clock time and date at job start Fri Apr 10 2020 18:27:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.34777 * 119.99682 * 2 1 4 4 O 1.21589 * 120.00293 * 359.97438 * 3 2 1 5 5 N 1.34782 * 119.99856 * 179.97438 * 3 2 1 6 6 C 1.46498 * 120.00126 * 179.97438 * 5 3 2 7 7 C 1.50699 * 109.46988 * 180.02562 * 6 5 3 8 8 O 1.21278 * 120.00056 * 359.97438 * 7 6 5 9 9 N 1.34774 * 119.99823 * 180.02562 * 7 6 5 10 10 C 1.39581 * 119.99990 * 179.97438 * 9 7 6 11 11 N 1.32276 * 119.72745 * 0.26696 * 10 9 7 12 12 C 1.31949 * 121.69079 * 180.30946 * 11 10 9 13 13 C 1.38093 * 120.95747 * 359.70619 * 12 11 10 14 14 C 1.38775 * 119.35013 * 359.97438 * 13 12 11 15 15 C 1.38801 * 118.45054 * 359.97438 * 14 13 12 16 16 O 1.35973 * 120.50125 * 179.97438 * 15 14 13 17 17 C 1.42906 * 116.99587 * 0.02562 * 16 15 14 18 18 C 1.53006 * 109.46748 * 179.97438 * 17 16 15 19 19 C 1.50699 * 109.46866 * 179.97438 * 18 17 16 20 20 H 1.08003 * 119.99962 * 359.97438 * 19 18 17 21 21 C 1.37874 * 120.00270 * 180.02562 * 19 18 17 22 22 N 1.31513 * 120.00305 * 179.97438 * 21 19 18 23 23 Si 1.86805 * 119.99832 * 359.97438 * 21 19 18 24 24 H 1.48497 * 109.46901 * 89.99815 * 23 21 19 25 25 H 1.48488 * 109.47487 * 210.00255 * 23 21 19 26 26 H 1.48503 * 109.47026 * 330.00635 * 23 21 19 27 27 H 1.09002 * 109.46906 * 60.00421 * 1 2 3 28 28 H 1.08999 * 109.47282 * 180.02562 * 1 2 3 29 29 H 1.08997 * 109.47480 * 300.00670 * 1 2 3 30 30 H 0.96998 * 119.99732 * 179.97438 * 2 1 3 31 31 H 0.96998 * 119.99557 * 359.97438 * 5 3 2 32 32 H 1.08995 * 109.47298 * 59.99895 * 6 5 3 33 33 H 1.09002 * 109.47147 * 299.99950 * 6 5 3 34 34 H 0.97000 * 120.00150 * 359.97438 * 9 7 6 35 35 H 1.08000 * 119.52722 * 179.72569 * 12 11 10 36 36 H 1.07997 * 120.32692 * 179.97438 * 13 12 11 37 37 H 1.08002 * 120.77560 * 180.02562 * 14 13 12 38 38 H 1.09000 * 109.47490 * 59.99648 * 17 16 15 39 39 H 1.09001 * 109.47232 * 299.99002 * 17 16 15 40 40 H 1.08993 * 109.46955 * 299.99993 * 18 17 16 41 41 H 1.09000 * 109.47050 * 59.99822 * 18 17 16 42 42 H 0.97002 * 120.00008 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1388 1.1672 0.0000 4 8 1.5309 2.2202 -0.0005 5 7 3.4867 1.1673 0.0005 6 6 4.2191 2.4360 0.0000 7 6 5.7007 2.1606 0.0001 8 8 6.1050 1.0172 0.0011 9 7 6.5765 3.1850 0.0001 10 6 7.9488 2.9300 0.0008 11 7 8.3839 1.6808 -0.0040 12 6 9.6721 1.3954 0.0025 13 6 10.6218 2.3979 0.0085 14 6 10.2114 3.7236 0.0072 15 6 8.8501 3.9944 -0.0007 16 8 8.4018 5.2781 -0.0018 17 6 9.3900 6.3103 0.0051 18 6 8.7007 7.6763 0.0021 19 6 9.7428 8.7648 0.0099 20 1 10.7918 8.5081 0.0168 21 6 9.3571 10.0885 0.0094 22 7 10.2666 11.0385 0.0167 23 14 7.5427 10.5327 -0.0018 24 1 7.0528 10.6482 1.3953 25 1 7.3546 11.8290 -0.7011 26 1 6.7782 9.4735 -0.7083 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3634 -1.0276 0.0005 29 1 -0.3634 0.5139 0.8899 30 1 1.9500 -0.8401 0.0004 31 1 3.9716 0.3272 0.0013 32 1 3.9555 3.0082 0.8894 33 1 3.9562 3.0070 -0.8905 34 1 6.2532 4.0995 -0.0003 35 1 9.9885 0.3627 0.0027 36 1 11.6735 2.1527 0.0142 37 1 10.9344 4.5259 0.0115 38 1 10.0176 6.2185 -0.8814 39 1 10.0073 6.2165 0.8985 40 1 8.0837 7.7699 -0.8915 41 1 8.0729 7.7684 0.8884 42 1 9.9951 11.9698 0.0160 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000270486995.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:27:53 Heat of formation + Delta-G solvation = -51.177515 kcal Electronic energy + Delta-G solvation = -25979.039417 eV Core-core repulsion = 21960.478168 eV Total energy + Delta-G solvation = -4018.561250 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 322.147 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -41.11814 -40.30157 -39.29702 -37.93875 -35.26888 -34.92822 -34.54348 -33.47042 -31.81906 -31.05972 -29.79094 -28.43097 -26.14600 -25.66857 -23.55252 -22.88592 -21.26828 -20.95517 -20.45634 -19.24982 -18.52580 -17.81356 -17.07653 -16.74580 -16.49261 -16.38484 -15.86542 -15.75442 -15.28287 -15.11112 -14.67948 -14.52636 -14.26862 -14.09227 -14.07015 -13.48215 -13.43891 -13.12217 -12.66928 -12.60905 -12.58612 -12.25020 -12.13301 -11.28299 -11.01205 -10.90078 -10.62405 -10.52861 -10.33545 -10.18769 -9.94755 -9.67700 -9.46821 -9.36703 -9.23428 -9.21740 -8.70625 -7.83446 -6.21465 -4.23558 1.04695 1.31533 2.15713 2.41966 2.82497 2.90464 3.22656 3.30546 3.33797 3.35884 3.86820 3.96099 4.12344 4.31361 4.60295 4.83292 4.83821 4.96176 5.04895 5.08087 5.12234 5.12392 5.19512 5.34381 5.44702 5.70618 5.74890 5.91897 6.00479 6.06730 6.07635 6.16962 6.30427 6.44035 6.54673 6.89719 7.02696 7.09589 7.44590 7.57695 7.65587 7.81453 8.13598 8.26784 8.29015 8.78343 9.38077 10.90805 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.010639 B = 0.002818 C = 0.002234 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2631.238252 B = 9932.379077 C =12532.549853 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.107 3.893 2 N -0.750 5.750 3 C 0.706 3.294 4 O -0.590 6.590 5 N -0.734 5.734 6 C 0.121 3.879 7 C 0.502 3.498 8 O -0.480 6.480 9 N -0.647 5.647 10 C 0.325 3.675 11 N -0.444 5.444 12 C 0.076 3.924 13 C -0.156 4.156 14 C -0.146 4.146 15 C 0.070 3.930 16 O -0.319 6.319 17 C 0.073 3.927 18 C -0.008 4.008 19 C -0.530 4.530 20 H 0.074 0.926 21 C 0.073 3.927 22 N -0.895 5.895 23 Si 0.881 3.119 24 H -0.275 1.275 25 H -0.286 1.286 26 H -0.263 1.263 27 H 0.059 0.941 28 H 0.075 0.925 29 H 0.058 0.942 30 H 0.399 0.601 31 H 0.408 0.592 32 H 0.103 0.897 33 H 0.103 0.897 34 H 0.427 0.573 35 H 0.158 0.842 36 H 0.136 0.864 37 H 0.148 0.852 38 H 0.059 0.941 39 H 0.059 0.941 40 H 0.029 0.971 41 H 0.024 0.976 42 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.807 -23.642 -0.042 25.995 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.037 4.037 2 N -0.405 5.405 3 C 0.405 3.595 4 O -0.467 6.467 5 N -0.393 5.393 6 C -0.007 4.007 7 C 0.287 3.713 8 O -0.350 6.350 9 N -0.295 5.295 10 C 0.093 3.907 11 N -0.158 5.158 12 C -0.081 4.081 13 C -0.177 4.177 14 C -0.173 4.173 15 C 0.019 3.981 16 O -0.232 6.232 17 C -0.001 4.001 18 C -0.045 4.045 19 C -0.568 4.568 20 H 0.093 0.907 21 C -0.130 4.130 22 N -0.533 5.533 23 Si 0.708 3.292 24 H -0.200 1.200 25 H -0.211 1.211 26 H -0.187 1.187 27 H 0.077 0.923 28 H 0.094 0.906 29 H 0.077 0.923 30 H 0.232 0.768 31 H 0.245 0.755 32 H 0.121 0.879 33 H 0.120 0.880 34 H 0.265 0.735 35 H 0.175 0.825 36 H 0.154 0.846 37 H 0.165 0.835 38 H 0.078 0.922 39 H 0.077 0.923 40 H 0.047 0.953 41 H 0.043 0.957 42 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -11.959 -23.876 -0.052 26.704 hybrid contribution 0.455 0.871 0.020 0.983 sum -11.504 -23.005 -0.032 25.721 Atomic orbital electron populations 1.21409 0.77895 1.02030 1.02407 1.44867 1.07831 1.07113 1.80737 1.15819 0.81299 0.84452 0.77900 1.90958 1.67868 1.30211 1.57707 1.44695 1.04712 1.09522 1.80403 1.20857 0.87441 0.86995 1.05455 1.20648 0.88199 0.85491 0.76936 1.90781 1.79039 1.20363 1.44839 1.43271 1.02960 1.11281 1.71983 1.17734 0.83657 0.87898 1.01417 1.67585 1.17798 1.17038 1.13423 1.22423 0.86822 0.99868 0.98981 1.21936 1.01320 0.92533 1.01897 1.21660 0.94205 0.98537 1.02861 1.19540 0.92504 0.85531 1.00546 1.86056 1.38194 1.11212 1.87716 1.23167 0.90312 0.85854 1.00728 1.19590 0.97523 0.89429 0.97984 1.20797 0.93781 0.89390 1.52811 0.90741 1.24939 0.97831 0.96205 0.94012 1.69885 1.33450 1.00188 1.49783 0.86754 0.85477 0.78193 0.78802 1.20021 1.21144 1.18729 0.92274 0.90602 0.92283 0.76757 0.75458 0.87941 0.87952 0.73481 0.82484 0.84579 0.83473 0.92249 0.92270 0.95313 0.95748 0.92349 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.11 0.65 10.70 59.85 0.64 1.29 16 2 N -0.75 -5.52 5.72 -72.07 -0.41 -5.93 16 3 C 0.71 7.76 8.57 -86.91 -0.74 7.02 16 4 O -0.59 -8.81 16.34 5.29 0.09 -8.73 16 5 N -0.73 -7.13 5.53 -66.42 -0.37 -7.50 16 6 C 0.12 1.19 6.15 -5.20 -0.03 1.16 16 7 C 0.50 6.08 7.86 -10.99 -0.09 5.99 16 8 O -0.48 -7.03 13.92 5.56 0.08 -6.96 16 9 N -0.65 -8.17 5.39 -11.29 -0.06 -8.23 16 10 C 0.33 4.84 7.45 -154.43 -1.15 3.69 16 11 N -0.44 -6.67 7.88 -12.22 -0.10 -6.76 16 12 C 0.08 0.93 11.17 -17.55 -0.20 0.73 16 13 C -0.16 -1.76 10.10 -39.44 -0.40 -2.16 16 14 C -0.15 -1.95 9.14 -39.17 -0.36 -2.31 16 15 C 0.07 1.06 6.72 -38.91 -0.26 0.80 16 16 O -0.32 -5.30 9.39 -19.66 -0.18 -5.48 16 17 C 0.07 1.34 4.70 37.16 0.17 1.51 16 18 C -0.01 -0.17 4.41 -27.88 -0.12 -0.30 16 19 C -0.53 -14.16 9.66 -34.44 -0.33 -14.50 16 20 H 0.07 2.11 7.99 -52.48 -0.42 1.69 16 21 C 0.07 2.02 5.47 -17.82 -0.10 1.92 16 22 N -0.90 -26.39 13.96 55.43 0.77 -25.61 16 23 Si 0.88 20.71 27.47 -169.99 -4.67 16.04 16 24 H -0.27 -6.36 7.11 56.52 0.40 -5.96 16 25 H -0.29 -6.69 7.11 56.52 0.40 -6.29 16 26 H -0.26 -5.92 6.54 56.52 0.37 -5.55 16 27 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 28 H 0.08 0.22 8.14 -51.93 -0.42 -0.21 16 29 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 30 H 0.40 1.81 8.84 -40.82 -0.36 1.45 16 31 H 0.41 3.57 7.45 -40.82 -0.30 3.27 16 32 H 0.10 0.94 8.14 -51.93 -0.42 0.52 16 33 H 0.10 0.94 8.14 -51.93 -0.42 0.52 16 34 H 0.43 4.65 8.04 -40.82 -0.33 4.33 16 35 H 0.16 1.45 8.06 -52.49 -0.42 1.03 16 36 H 0.14 1.12 8.06 -52.49 -0.42 0.70 16 37 H 0.15 1.84 6.44 -52.49 -0.34 1.50 16 38 H 0.06 1.05 7.70 -51.93 -0.40 0.65 16 39 H 0.06 1.04 7.70 -51.93 -0.40 0.64 16 40 H 0.03 0.64 7.20 -51.93 -0.37 0.27 16 41 H 0.02 0.54 7.57 -51.93 -0.39 0.14 16 42 H 0.27 7.35 8.31 -40.82 -0.34 7.01 16 LS Contribution 362.52 15.07 5.46 5.46 Total: -1.00 -35.37 362.52 -7.80 -43.16 By element: Atomic # 1 Polarization: 11.12 SS G_CDS: -5.44 Total: 5.68 kcal Atomic # 6 Polarization: 7.82 SS G_CDS: -2.96 Total: 4.86 kcal Atomic # 7 Polarization: -53.88 SS G_CDS: -0.16 Total: -54.05 kcal Atomic # 8 Polarization: -21.14 SS G_CDS: -0.02 Total: -21.16 kcal Atomic # 14 Polarization: 20.71 SS G_CDS: -4.67 Total: 16.04 kcal Total LS contribution 5.46 Total: 5.46 kcal Total: -35.37 -7.80 -43.16 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000270486995.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.013 kcal (2) G-P(sol) polarization free energy of solvation -35.367 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.380 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.798 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.165 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.178 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds