Wall clock time and date at job start Fri Apr 10 2020 18:27:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.34777 * 119.99682 * 2 1 4 4 O 1.21589 * 120.00293 * 359.97438 * 3 2 1 5 5 N 1.34782 * 119.99856 * 179.97438 * 3 2 1 6 6 C 1.46498 * 120.00126 * 179.97438 * 5 3 2 7 7 C 1.50699 * 109.46988 * 180.02562 * 6 5 3 8 8 O 1.21278 * 120.00056 * 359.97438 * 7 6 5 9 9 N 1.34774 * 119.99823 * 180.02562 * 7 6 5 10 10 C 1.39581 * 119.99990 * 179.97438 * 9 7 6 11 11 N 1.32276 * 119.72745 * 0.26696 * 10 9 7 12 12 C 1.31949 * 121.69079 * 180.30946 * 11 10 9 13 13 C 1.38093 * 120.95747 * 359.70619 * 12 11 10 14 14 C 1.38775 * 119.35013 * 359.97438 * 13 12 11 15 15 C 1.38801 * 118.45054 * 359.97438 * 14 13 12 16 16 O 1.35973 * 120.50125 * 179.97438 * 15 14 13 17 17 C 1.42906 * 116.99587 * 0.02562 * 16 15 14 18 18 C 1.53006 * 109.46748 * 179.97438 * 17 16 15 19 19 C 1.50699 * 109.46866 * 179.97438 * 18 17 16 20 20 H 1.08003 * 119.99962 * 359.97438 * 19 18 17 21 21 C 1.37874 * 120.00270 * 180.02562 * 19 18 17 22 22 N 1.31513 * 120.00305 * 179.97438 * 21 19 18 23 23 Si 1.86805 * 119.99832 * 359.97438 * 21 19 18 24 24 H 1.48497 * 109.46901 * 89.99815 * 23 21 19 25 25 H 1.48488 * 109.47487 * 210.00255 * 23 21 19 26 26 H 1.48503 * 109.47026 * 330.00635 * 23 21 19 27 27 H 1.09002 * 109.46906 * 60.00421 * 1 2 3 28 28 H 1.08999 * 109.47282 * 180.02562 * 1 2 3 29 29 H 1.08997 * 109.47480 * 300.00670 * 1 2 3 30 30 H 0.96998 * 119.99732 * 179.97438 * 2 1 3 31 31 H 0.96998 * 119.99557 * 359.97438 * 5 3 2 32 32 H 1.08995 * 109.47298 * 59.99895 * 6 5 3 33 33 H 1.09002 * 109.47147 * 299.99950 * 6 5 3 34 34 H 0.97000 * 120.00150 * 359.97438 * 9 7 6 35 35 H 1.08000 * 119.52722 * 179.72569 * 12 11 10 36 36 H 1.07997 * 120.32692 * 179.97438 * 13 12 11 37 37 H 1.08002 * 120.77560 * 180.02562 * 14 13 12 38 38 H 1.09000 * 109.47490 * 59.99648 * 17 16 15 39 39 H 1.09001 * 109.47232 * 299.99002 * 17 16 15 40 40 H 1.08993 * 109.46955 * 299.99993 * 18 17 16 41 41 H 1.09000 * 109.47050 * 59.99822 * 18 17 16 42 42 H 0.97002 * 120.00008 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1388 1.1672 0.0000 4 8 1.5309 2.2202 -0.0005 5 7 3.4867 1.1673 0.0005 6 6 4.2191 2.4360 0.0000 7 6 5.7007 2.1606 0.0001 8 8 6.1050 1.0172 0.0011 9 7 6.5765 3.1850 0.0001 10 6 7.9488 2.9300 0.0008 11 7 8.3839 1.6808 -0.0040 12 6 9.6721 1.3954 0.0025 13 6 10.6218 2.3979 0.0085 14 6 10.2114 3.7236 0.0072 15 6 8.8501 3.9944 -0.0007 16 8 8.4018 5.2781 -0.0018 17 6 9.3900 6.3103 0.0051 18 6 8.7007 7.6763 0.0021 19 6 9.7428 8.7648 0.0099 20 1 10.7918 8.5081 0.0168 21 6 9.3571 10.0885 0.0094 22 7 10.2666 11.0385 0.0167 23 14 7.5427 10.5327 -0.0018 24 1 7.0528 10.6482 1.3953 25 1 7.3546 11.8290 -0.7011 26 1 6.7782 9.4735 -0.7083 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3634 -1.0276 0.0005 29 1 -0.3634 0.5139 0.8899 30 1 1.9500 -0.8401 0.0004 31 1 3.9716 0.3272 0.0013 32 1 3.9555 3.0082 0.8894 33 1 3.9562 3.0070 -0.8905 34 1 6.2532 4.0995 -0.0003 35 1 9.9885 0.3627 0.0027 36 1 11.6735 2.1527 0.0142 37 1 10.9344 4.5259 0.0115 38 1 10.0176 6.2185 -0.8814 39 1 10.0073 6.2165 0.8985 40 1 8.0837 7.7699 -0.8915 41 1 8.0729 7.7684 0.8884 42 1 9.9951 11.9698 0.0160 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000270486995.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:27:51 Heat of formation + Delta-G solvation = -78.820165 kcal Electronic energy + Delta-G solvation = -25980.238093 eV Core-core repulsion = 21960.478168 eV Total energy + Delta-G solvation = -4019.759925 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 322.147 amu Computer time = 1.23 seconds Orbital eigenvalues (eV) -42.13827 -41.18969 -40.29681 -39.11878 -36.19783 -35.68016 -35.47555 -35.37720 -33.07673 -32.57515 -30.90771 -29.26227 -27.31556 -26.79006 -24.77028 -23.94435 -22.56898 -21.98488 -21.55277 -20.08277 -19.65751 -19.16866 -18.28146 -18.05820 -17.42653 -17.34769 -17.00875 -16.83578 -16.28723 -16.23791 -15.98599 -15.54553 -15.28156 -15.21551 -15.10995 -14.74796 -14.37373 -14.27194 -14.09276 -13.79692 -13.45759 -13.34848 -13.01848 -12.85156 -12.70988 -12.19139 -11.92061 -11.83132 -11.64488 -11.57172 -11.50192 -11.43907 -10.79979 -10.51888 -10.42992 -10.26750 -9.88286 -8.89970 -8.33134 -6.39721 0.04724 0.26897 1.34809 1.38417 1.40469 1.47739 1.51525 1.99639 2.06661 2.08986 2.34488 2.85314 3.02692 3.21792 3.31492 3.60848 3.83845 4.00176 4.11833 4.25034 4.28011 4.29830 4.31036 4.44300 4.48188 4.68207 4.68313 4.93696 4.97574 5.06491 5.13261 5.20992 5.21858 5.33737 5.46638 5.48684 5.58191 5.89829 6.09970 6.16882 6.26135 6.67065 6.80492 6.99198 7.16124 7.25601 7.48793 8.82263 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.010639 B = 0.002818 C = 0.002234 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2631.238252 B = 9932.379077 C =12532.549853 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.103 3.897 2 N -0.737 5.737 3 C 0.700 3.300 4 O -0.633 6.633 5 N -0.729 5.729 6 C 0.127 3.873 7 C 0.508 3.492 8 O -0.506 6.506 9 N -0.645 5.645 10 C 0.312 3.688 11 N -0.469 5.469 12 C 0.076 3.924 13 C -0.144 4.144 14 C -0.150 4.150 15 C 0.045 3.955 16 O -0.324 6.324 17 C 0.087 3.913 18 C -0.007 4.007 19 C -0.535 4.535 20 H 0.043 0.957 21 C 0.012 3.988 22 N -0.943 5.943 23 Si 0.947 3.053 24 H -0.266 1.266 25 H -0.285 1.285 26 H -0.244 1.244 27 H 0.048 0.952 28 H 0.113 0.887 29 H 0.048 0.952 30 H 0.415 0.585 31 H 0.414 0.586 32 H 0.111 0.889 33 H 0.111 0.889 34 H 0.433 0.567 35 H 0.188 0.812 36 H 0.173 0.827 37 H 0.153 0.847 38 H 0.062 0.938 39 H 0.062 0.938 40 H 0.031 0.969 41 H 0.029 0.971 42 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.752 -25.768 -0.041 28.322 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.041 4.041 2 N -0.393 5.393 3 C 0.400 3.600 4 O -0.514 6.514 5 N -0.388 5.388 6 C -0.001 4.001 7 C 0.294 3.706 8 O -0.378 6.378 9 N -0.294 5.294 10 C 0.081 3.919 11 N -0.185 5.185 12 C -0.081 4.081 13 C -0.165 4.165 14 C -0.177 4.177 15 C -0.005 4.005 16 O -0.237 6.237 17 C 0.012 3.988 18 C -0.044 4.044 19 C -0.573 4.573 20 H 0.061 0.939 21 C -0.186 4.186 22 N -0.583 5.583 23 Si 0.770 3.230 24 H -0.192 1.192 25 H -0.211 1.211 26 H -0.168 1.168 27 H 0.067 0.933 28 H 0.132 0.868 29 H 0.067 0.933 30 H 0.251 0.749 31 H 0.252 0.748 32 H 0.129 0.871 33 H 0.129 0.871 34 H 0.272 0.728 35 H 0.205 0.795 36 H 0.190 0.810 37 H 0.170 0.830 38 H 0.080 0.920 39 H 0.081 0.919 40 H 0.049 0.951 41 H 0.048 0.952 42 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -12.907 -26.063 -0.051 29.084 hybrid contribution 0.879 1.369 0.022 1.627 sum -12.029 -24.694 -0.030 27.468 Atomic orbital electron populations 1.21569 0.76948 1.04203 1.01372 1.44845 1.08446 1.06740 1.79294 1.16044 0.81448 0.84796 0.77746 1.90926 1.68691 1.31984 1.59843 1.44634 1.04432 1.09718 1.80009 1.20842 0.85769 0.87292 1.06244 1.20930 0.88807 0.84933 0.75925 1.90759 1.79618 1.21314 1.46140 1.43322 1.02530 1.11806 1.71724 1.17910 0.84411 0.87903 1.01727 1.67657 1.19356 1.17051 1.14407 1.23047 0.86152 1.01627 0.97232 1.22289 1.03042 0.91240 0.99934 1.21907 0.93625 0.99861 1.02316 1.19677 0.93526 0.84641 1.02684 1.85975 1.37437 1.11708 1.88562 1.22754 0.90022 0.84877 1.01124 1.19445 0.96471 0.90372 0.98117 1.21122 0.93587 0.90892 1.51655 0.93869 1.25880 1.02667 0.96245 0.93823 1.70027 1.35893 1.00691 1.51708 0.85708 0.79774 0.78210 0.79317 1.19151 1.21085 1.16784 0.93329 0.86828 0.93335 0.74942 0.74802 0.87109 0.87133 0.72777 0.79516 0.80990 0.82966 0.91956 0.91939 0.95097 0.95219 0.92241 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 1.10 10.70 127.77 1.37 2.46 16 2 N -0.74 -9.77 5.72 -500.18 -2.86 -12.63 16 3 C 0.70 14.83 8.57 179.05 1.53 16.36 16 4 O -0.63 -18.78 16.34 -4.00 -0.07 -18.85 16 5 N -0.73 -13.46 5.53 -482.30 -2.67 -16.12 16 6 C 0.13 2.38 6.15 85.63 0.53 2.91 16 7 C 0.51 11.90 7.86 87.66 0.69 12.59 16 8 O -0.51 -14.43 13.92 -3.02 -0.04 -14.48 16 9 N -0.64 -15.86 5.39 -308.03 -1.66 -17.52 16 10 C 0.31 9.00 7.45 132.98 0.99 9.99 16 11 N -0.47 -13.43 7.88 -192.58 -1.52 -14.94 16 12 C 0.08 1.66 11.17 84.64 0.95 2.61 16 13 C -0.14 -2.85 10.10 22.36 0.23 -2.62 16 14 C -0.15 -3.76 9.14 22.53 0.21 -3.55 16 15 C 0.05 1.32 6.72 22.70 0.15 1.48 16 16 O -0.32 -10.45 9.39 -93.25 -0.88 -11.33 16 17 C 0.09 3.11 4.70 71.98 0.34 3.44 16 18 C -0.01 -0.29 4.41 29.85 0.13 -0.15 16 19 C -0.53 -28.90 9.66 25.60 0.25 -28.65 16 20 H 0.04 2.53 7.99 -2.91 -0.02 2.50 16 21 C 0.01 0.67 5.47 84.65 0.46 1.13 16 22 N -0.94 -56.78 13.96 21.45 0.30 -56.48 16 23 Si 0.95 42.35 27.47 68.60 1.88 44.23 16 24 H -0.27 -11.51 7.11 99.48 0.71 -10.80 16 25 H -0.29 -12.63 7.11 99.48 0.71 -11.93 16 26 H -0.24 -10.12 6.54 99.48 0.65 -9.47 16 27 H 0.05 0.63 8.14 -2.39 -0.02 0.61 16 28 H 0.11 0.33 8.14 -2.39 -0.02 0.31 16 29 H 0.05 0.63 8.14 -2.39 -0.02 0.61 16 30 H 0.41 2.91 8.84 -92.71 -0.82 2.09 16 31 H 0.41 6.77 7.45 -92.71 -0.69 6.08 16 32 H 0.11 1.93 8.14 -2.39 -0.02 1.92 16 33 H 0.11 1.93 8.14 -2.39 -0.02 1.91 16 34 H 0.43 9.16 8.04 -92.71 -0.75 8.42 16 35 H 0.19 2.81 8.06 -2.91 -0.02 2.79 16 36 H 0.17 2.11 8.06 -2.91 -0.02 2.08 16 37 H 0.15 3.58 6.44 -2.91 -0.02 3.56 16 38 H 0.06 2.17 7.70 -2.39 -0.02 2.15 16 39 H 0.06 2.17 7.70 -2.39 -0.02 2.15 16 40 H 0.03 1.34 7.20 -2.39 -0.02 1.32 16 41 H 0.03 1.26 7.57 -2.39 -0.02 1.25 16 42 H 0.27 15.11 8.31 -92.71 -0.77 14.34 16 Total: -1.00 -77.33 362.52 -0.91 -78.23 By element: Atomic # 1 Polarization: 23.11 SS G_CDS: -1.22 Total: 21.89 kcal Atomic # 6 Polarization: 10.17 SS G_CDS: 7.82 Total: 17.99 kcal Atomic # 7 Polarization: -109.29 SS G_CDS: -8.41 Total: -117.70 kcal Atomic # 8 Polarization: -43.67 SS G_CDS: -0.98 Total: -44.65 kcal Atomic # 14 Polarization: 42.35 SS G_CDS: 1.88 Total: 44.23 kcal Total: -77.33 -0.91 -78.23 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000270486995.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.585 kcal (2) G-P(sol) polarization free energy of solvation -77.328 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.914 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.907 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.235 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.820 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.23 seconds