Wall clock time and date at job start Fri Apr 10 2020 18:27:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46494 * 1 3 3 C 1.34776 * 120.00227 * 2 1 4 4 O 1.21283 * 119.99606 * 359.97438 * 3 2 1 5 5 C 1.50704 * 120.00328 * 179.97438 * 3 2 1 6 6 N 1.46496 * 109.47076 * 179.97438 * 5 3 2 7 7 C 1.34775 * 119.99986 * 180.02562 * 6 5 3 8 8 O 1.21589 * 120.00064 * 359.97438 * 7 6 5 9 9 N 1.34774 * 120.00006 * 180.02562 * 7 6 5 10 10 C 1.39594 * 119.99891 * 179.97438 * 9 7 6 11 11 N 1.32266 * 119.72727 * 0.26464 * 10 9 7 12 12 C 1.31963 * 121.69068 * 180.26509 * 11 10 9 13 13 C 1.38075 * 120.95403 * 359.72759 * 12 11 10 14 14 C 1.38794 * 119.35183 * 359.97438 * 13 12 11 15 15 C 1.38781 * 118.44752 * 359.97438 * 14 13 12 16 16 O 1.35983 * 120.49767 * 179.97438 * 15 14 13 17 17 C 1.42906 * 116.99537 * 0.02562 * 16 15 14 18 18 C 1.53006 * 109.46748 * 179.97438 * 17 16 15 19 19 C 1.50699 * 109.46866 * 179.97438 * 18 17 16 20 20 H 1.08003 * 119.99962 * 359.97438 * 19 18 17 21 21 C 1.37874 * 120.00270 * 180.02562 * 19 18 17 22 22 N 1.31522 * 119.99834 * 359.97438 * 21 19 18 23 23 Si 1.86793 * 120.00496 * 180.02562 * 21 19 18 24 24 H 1.48494 * 109.47325 * 59.99531 * 23 21 19 25 25 H 1.48496 * 109.47425 * 179.97438 * 23 21 19 26 26 H 1.48505 * 109.47183 * 299.99726 * 23 21 19 27 27 H 1.08999 * 109.47095 * 180.02562 * 1 2 3 28 28 H 1.09002 * 109.47560 * 299.99903 * 1 2 3 29 29 H 1.09002 * 109.47222 * 60.00299 * 1 2 3 30 30 H 0.97006 * 120.00158 * 179.97438 * 2 1 3 31 31 H 1.08998 * 109.46536 * 60.00279 * 5 3 2 32 32 H 1.09003 * 109.47038 * 300.00320 * 5 3 2 33 33 H 0.97000 * 120.00232 * 0.02562 * 6 5 3 34 34 H 0.97000 * 120.00212 * 359.97438 * 9 7 6 35 35 H 1.08000 * 119.52770 * 179.74706 * 12 11 10 36 36 H 1.07997 * 120.32417 * 179.97438 * 13 12 11 37 37 H 1.07993 * 120.77636 * 180.02562 * 14 13 12 38 38 H 1.09000 * 109.47490 * 59.99651 * 17 16 15 39 39 H 1.09001 * 109.47232 * 299.99005 * 17 16 15 40 40 H 1.08993 * 109.46955 * 299.99993 * 18 17 16 41 41 H 1.09000 * 109.47050 * 59.99822 * 18 17 16 42 42 H 0.96992 * 120.00032 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1389 1.1672 0.0000 4 8 1.5324 2.2175 -0.0005 5 6 3.6459 1.1672 0.0006 6 7 4.1342 2.5484 -0.0002 7 6 5.4592 2.7947 -0.0003 8 8 6.2494 1.8705 0.0006 9 7 5.9085 4.0654 -0.0005 10 6 7.2809 4.3204 -0.0001 11 7 8.1356 3.3111 -0.0049 12 6 9.4405 3.5076 0.0004 13 6 9.9664 4.7842 0.0057 14 6 9.1070 5.8741 0.0048 15 6 7.7395 5.6376 -0.0020 16 8 6.8598 6.6746 -0.0026 17 6 7.4112 7.9930 0.0034 18 6 6.2771 9.0200 0.0011 19 6 6.8585 10.4103 0.0081 20 1 7.9297 10.5476 0.0140 21 6 6.0229 11.5070 0.0080 22 7 4.7184 11.3398 0.0012 23 14 6.7435 13.2303 0.0159 24 1 7.5852 13.4205 -1.1926 25 1 5.6429 14.2272 0.0137 26 1 7.5754 13.4135 1.2323 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3634 0.5138 0.8900 29 1 -0.3634 0.5138 -0.8900 30 1 1.9500 -0.8401 0.0004 31 1 4.0095 0.6532 -0.8892 32 1 4.0089 0.6535 0.8908 33 1 3.5039 3.2857 -0.0005 34 1 5.2781 4.8026 -0.0008 35 1 10.1068 2.6576 0.0003 36 1 11.0360 4.9333 0.0104 37 1 9.4934 6.8825 0.0084 38 1 8.0291 8.1325 -0.8836 39 1 8.0217 8.1274 0.8964 40 1 5.6669 8.8854 -0.8919 41 1 5.6589 8.8806 0.8880 42 1 4.1306 12.1113 0.0008 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000276097403.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:27:55 Heat of formation + Delta-G solvation = -81.296949 kcal Electronic energy + Delta-G solvation = -25968.122975 eV Core-core repulsion = 21948.255648 eV Total energy + Delta-G solvation = -4019.867326 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 322.147 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -42.10633 -41.14001 -40.31094 -39.09165 -36.10283 -35.82125 -35.47329 -35.38961 -32.86633 -32.26422 -30.70911 -29.48894 -27.16037 -26.68055 -24.88625 -23.92210 -22.80153 -21.83546 -21.70574 -20.07282 -19.56825 -18.93584 -18.04636 -17.84965 -17.33054 -17.30439 -17.11021 -16.98290 -16.48605 -16.23371 -16.07524 -15.53715 -15.26615 -15.12442 -15.02625 -14.34381 -14.32500 -14.25856 -14.12624 -13.64904 -13.41925 -13.27238 -13.09542 -12.80077 -12.71678 -12.44375 -11.87142 -11.69963 -11.68405 -11.59722 -11.42188 -11.21553 -10.60106 -10.45159 -10.29139 -10.24907 -10.13881 -8.81524 -8.25209 -6.38263 0.16316 0.32762 1.25462 1.42270 1.42719 1.45431 1.53265 2.03903 2.13437 2.18783 2.45051 2.93126 2.93722 3.09798 3.57345 3.67119 3.88871 3.98412 4.15800 4.30644 4.32548 4.33679 4.35043 4.46459 4.50773 4.62518 4.75734 4.95839 4.97839 5.15499 5.21622 5.27794 5.32179 5.32515 5.50401 5.51557 5.68805 5.79121 6.08124 6.36328 6.40376 6.63251 6.76826 7.09102 7.12885 7.31860 7.45150 8.87334 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.010513 B = 0.002704 C = 0.002156 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2662.695919 B =10351.265458 C =12982.897141 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.083 3.917 2 N -0.714 5.714 3 C 0.508 3.492 4 O -0.578 6.578 5 C 0.122 3.878 6 N -0.731 5.731 7 C 0.701 3.299 8 O -0.566 6.566 9 N -0.662 5.662 10 C 0.328 3.672 11 N -0.470 5.470 12 C 0.076 3.924 13 C -0.146 4.146 14 C -0.146 4.146 15 C 0.038 3.962 16 O -0.331 6.331 17 C 0.084 3.916 18 C 0.029 3.971 19 C -0.544 4.544 20 H 0.073 0.927 21 C 0.002 3.998 22 N -0.931 5.931 23 Si 0.972 3.028 24 H -0.264 1.264 25 H -0.286 1.286 26 H -0.264 1.264 27 H 0.115 0.885 28 H 0.050 0.950 29 H 0.050 0.950 30 H 0.424 0.576 31 H 0.114 0.886 32 H 0.114 0.886 33 H 0.410 0.590 34 H 0.424 0.576 35 H 0.189 0.811 36 H 0.176 0.824 37 H 0.157 0.843 38 H 0.065 0.935 39 H 0.065 0.935 40 H 0.000 1.000 41 H 0.000 1.000 42 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.172 -24.270 0.026 24.298 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 N -0.366 5.366 3 C 0.294 3.706 4 O -0.457 6.457 5 C -0.005 4.005 6 N -0.390 5.390 7 C 0.400 3.600 8 O -0.441 6.441 9 N -0.311 5.311 10 C 0.095 3.905 11 N -0.185 5.185 12 C -0.081 4.081 13 C -0.167 4.167 14 C -0.173 4.173 15 C -0.013 4.013 16 O -0.245 6.245 17 C 0.010 3.990 18 C -0.008 4.008 19 C -0.582 4.582 20 H 0.091 0.909 21 C -0.197 4.197 22 N -0.570 5.570 23 Si 0.796 3.204 24 H -0.189 1.189 25 H -0.211 1.211 26 H -0.188 1.188 27 H 0.133 0.867 28 H 0.069 0.931 29 H 0.069 0.931 30 H 0.261 0.739 31 H 0.132 0.868 32 H 0.132 0.868 33 H 0.247 0.753 34 H 0.261 0.739 35 H 0.206 0.794 36 H 0.194 0.806 37 H 0.175 0.825 38 H 0.083 0.917 39 H 0.083 0.917 40 H 0.018 0.982 41 H 0.018 0.982 42 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 0.616 -25.204 0.018 25.211 hybrid contribution -0.264 2.364 0.003 2.379 sum 0.352 -22.839 0.021 22.842 Atomic orbital electron populations 1.21717 0.78272 1.04558 1.01532 1.45579 1.08562 1.08358 1.74136 1.20711 0.90095 0.84322 0.75491 1.90736 1.70727 1.32932 1.51355 1.21024 0.89832 0.83288 1.06322 1.44768 1.04764 1.09673 1.79821 1.15876 0.82815 0.82851 0.78430 1.90985 1.54801 1.42680 1.55586 1.42485 1.05000 1.08263 1.75388 1.17656 0.84937 0.86523 1.01361 1.67665 1.04767 1.31517 1.14528 1.23089 0.89582 0.98214 0.97173 1.22285 1.02547 0.91556 1.00325 1.21890 0.90664 1.02498 1.02250 1.19707 0.91077 0.87144 1.03330 1.86037 1.34972 1.14842 1.88630 1.22945 0.97757 0.77364 1.00949 1.18950 0.93561 0.92191 0.96141 1.21380 0.93939 0.90963 1.51943 0.90926 1.26003 0.95101 1.04251 0.94318 1.70107 1.03991 1.32204 1.50701 0.85389 0.77912 0.77680 0.79418 1.18854 1.21106 1.18841 0.86668 0.93149 0.93142 0.73897 0.86849 0.86836 0.75288 0.73865 0.79444 0.80611 0.82543 0.91697 0.91692 0.98189 0.98194 0.92548 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.76 10.70 127.77 1.37 2.12 16 2 N -0.71 -7.18 5.71 -484.53 -2.77 -9.95 16 3 C 0.51 9.19 7.90 87.66 0.69 9.88 16 4 O -0.58 -15.79 15.67 -3.04 -0.05 -15.84 16 5 C 0.12 2.12 6.15 85.64 0.53 2.65 16 6 N -0.73 -17.84 5.53 -482.30 -2.67 -20.51 16 7 C 0.70 21.69 8.53 179.06 1.53 23.21 16 8 O -0.57 -20.20 14.59 -4.00 -0.06 -20.26 16 9 N -0.66 -21.27 5.40 -321.76 -1.74 -23.01 16 10 C 0.33 11.27 7.45 132.98 0.99 12.26 16 11 N -0.47 -15.57 7.87 -192.58 -1.52 -17.08 16 12 C 0.08 1.89 11.17 84.63 0.95 2.84 16 13 C -0.15 -3.17 10.10 22.36 0.23 -2.95 16 14 C -0.15 -4.02 9.14 22.53 0.21 -3.81 16 15 C 0.04 1.30 6.72 22.70 0.15 1.45 16 16 O -0.33 -12.79 9.39 -93.36 -0.88 -13.67 16 17 C 0.08 3.38 4.70 71.98 0.34 3.72 16 18 C 0.03 1.50 5.34 29.85 0.16 1.66 16 19 C -0.54 -29.59 9.11 25.60 0.23 -29.36 16 20 H 0.07 3.64 7.74 -2.91 -0.02 3.62 16 21 C 0.00 0.11 5.46 84.65 0.46 0.57 16 22 N -0.93 -55.73 13.29 21.45 0.28 -55.45 16 23 Si 0.97 42.64 29.54 68.60 2.03 44.67 16 24 H -0.26 -11.01 7.11 99.48 0.71 -10.31 16 25 H -0.29 -12.41 7.11 99.48 0.71 -11.71 16 26 H -0.26 -11.01 7.11 99.48 0.71 -10.30 16 27 H 0.11 0.19 8.14 -2.39 -0.02 0.17 16 28 H 0.05 0.61 8.14 -2.39 -0.02 0.59 16 29 H 0.05 0.61 8.14 -2.39 -0.02 0.59 16 30 H 0.42 1.18 8.83 -92.70 -0.82 0.36 16 31 H 0.11 1.66 8.14 -2.39 -0.02 1.64 16 32 H 0.11 1.66 8.14 -2.39 -0.02 1.64 16 33 H 0.41 10.14 7.45 -92.71 -0.69 9.45 16 34 H 0.42 12.85 8.06 -92.71 -0.75 12.11 16 35 H 0.19 3.28 8.06 -2.91 -0.02 3.26 16 36 H 0.18 2.32 8.06 -2.91 -0.02 2.30 16 37 H 0.16 3.86 6.44 -2.91 -0.02 3.84 16 38 H 0.06 2.42 7.70 -2.39 -0.02 2.40 16 39 H 0.06 2.42 7.70 -2.39 -0.02 2.40 16 40 H 0.00 -0.02 8.14 -2.39 -0.02 -0.04 16 41 H 0.00 -0.02 8.14 -2.39 -0.02 -0.04 16 42 H 0.27 14.98 8.31 -92.71 -0.77 14.21 16 Total: -1.00 -79.98 366.12 -0.70 -80.68 By element: Atomic # 1 Polarization: 27.35 SS G_CDS: -1.17 Total: 26.19 kcal Atomic # 6 Polarization: 16.41 SS G_CDS: 7.83 Total: 24.23 kcal Atomic # 7 Polarization: -117.60 SS G_CDS: -8.40 Total: -126.00 kcal Atomic # 8 Polarization: -48.79 SS G_CDS: -0.98 Total: -49.77 kcal Atomic # 14 Polarization: 42.64 SS G_CDS: 2.03 Total: 44.67 kcal Total: -79.98 -0.70 -80.68 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000276097403.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.621 kcal (2) G-P(sol) polarization free energy of solvation -79.977 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.598 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.699 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.676 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.297 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds