Wall clock time and date at job start Fri Apr 10 2020 18:28:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31001 * 1 3 3 C 1.50703 * 119.99899 * 2 1 4 4 N 1.46496 * 109.47067 * 124.99726 * 3 2 1 5 5 C 1.46499 * 119.99934 * 269.99675 * 4 3 2 6 6 C 1.50700 * 109.46912 * 270.00300 * 5 4 3 7 7 H 1.08000 * 120.00441 * 359.97438 * 6 5 4 8 8 C 1.37882 * 120.00073 * 180.02562 * 6 5 4 9 9 N 1.31522 * 119.99555 * 359.97438 * 8 6 5 10 10 Si 1.86794 * 120.00282 * 180.02562 * 8 6 5 11 11 H 1.48501 * 109.47544 * 89.99538 * 10 8 6 12 12 H 1.48509 * 109.47229 * 209.99795 * 10 8 6 13 13 H 1.48498 * 109.47070 * 329.99444 * 10 8 6 14 14 C 1.34777 * 120.00001 * 90.00069 * 4 3 2 15 15 O 1.21593 * 119.99923 * 179.97438 * 14 4 3 16 16 N 1.34777 * 120.00128 * 359.97438 * 14 4 3 17 17 C 1.40194 * 119.99945 * 180.27819 * 16 14 4 18 18 C 1.40400 * 125.97290 * 359.43673 * 17 16 14 19 19 C 1.35239 * 107.86845 * 179.86648 * 18 17 16 20 20 N 1.34968 * 107.85956 * 0.39102 * 19 18 17 21 21 C 1.46493 * 125.97621 * 179.71462 * 20 19 18 22 22 C 1.50701 * 109.46941 * 125.02106 * 21 20 19 23 23 O 1.20823 * 120.00344 * 0.02562 * 22 21 20 24 24 O 1.34236 * 119.99594 * 179.97438 * 22 21 20 25 25 C 1.45202 * 116.99623 * 179.97438 * 24 22 21 26 26 N 1.31208 * 125.97117 * 179.74638 * 17 16 14 27 27 H 1.08005 * 119.99659 * 180.02562 * 1 2 3 28 28 H 1.07996 * 120.00388 * 0.02562 * 1 2 3 29 29 H 1.08000 * 119.99710 * 179.97438 * 2 1 3 30 30 H 1.08999 * 109.46723 * 4.99296 * 3 2 1 31 31 H 1.09005 * 109.46546 * 244.99420 * 3 2 1 32 32 H 1.08996 * 109.47092 * 30.00115 * 5 4 3 33 33 H 1.08998 * 109.47416 * 150.00325 * 5 4 3 34 34 H 0.96996 * 119.99369 * 180.02562 * 9 8 6 35 35 H 0.97001 * 119.99727 * 359.97438 * 16 14 4 36 36 H 1.08006 * 126.06402 * 0.02562 * 18 17 16 37 37 H 1.08007 * 126.07492 * 180.11339 * 19 18 17 38 38 H 1.09001 * 109.47207 * 245.01894 * 21 20 19 39 39 H 1.09001 * 109.47468 * 5.02133 * 21 20 19 40 40 H 1.09005 * 109.47470 * 60.00056 * 25 24 22 41 41 H 1.08995 * 109.47237 * 180.02562 * 25 24 22 42 42 H 1.08997 * 109.47272 * 300.00440 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 7 2.9937 1.3320 1.1314 5 6 2.5587 1.8651 2.4248 6 6 2.8441 3.3438 2.4802 7 1 3.3039 3.8370 1.6366 8 6 2.5192 4.0668 3.6083 9 7 1.9597 3.4660 4.6359 10 14 2.8722 5.8998 3.6768 11 1 1.6989 6.6496 3.1607 12 1 3.1370 6.3008 5.0820 13 1 4.0616 6.2063 2.8422 14 6 4.2496 0.8662 0.9825 15 8 5.0218 0.8889 1.9214 16 7 4.6497 0.3754 -0.2073 17 6 5.9543 -0.1144 -0.3606 18 6 6.9462 -0.1437 0.6326 19 6 8.0585 -0.6912 0.0922 20 7 7.7886 -0.9904 -1.1960 21 6 8.7192 -1.5954 -2.1521 22 6 8.1021 -2.8410 -2.7341 23 8 6.9981 -3.1875 -2.3864 24 8 8.7786 -3.5649 -3.6398 25 6 8.1229 -4.7527 -4.1571 26 7 6.4635 -0.6203 -1.4589 27 1 -0.5400 -0.9354 0.0004 28 1 -0.5400 0.9352 -0.0004 29 1 1.8500 -0.9353 0.0004 30 1 1.3585 2.1316 0.0894 31 1 2.6214 1.4025 -0.9314 32 1 1.4886 1.6968 2.5458 33 1 3.0988 1.3606 3.2260 34 1 1.7308 3.9748 5.4294 35 1 4.0335 0.3569 -0.9562 36 1 6.8391 0.2063 1.6487 37 1 8.9976 -0.8555 0.5998 38 1 8.9298 -0.8861 -2.9526 39 1 9.6472 -1.8538 -1.6422 40 1 7.1906 -4.4694 -4.6458 41 1 8.7766 -5.2438 -4.8778 42 1 7.9092 -5.4366 -3.3358 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000293457119.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:28:01 Heat of formation + Delta-G solvation = 19.219639 kcal Electronic energy + Delta-G solvation = -26695.864120 eV Core-core repulsion = 22680.355520 eV Total energy + Delta-G solvation = -4015.508600 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 322.147 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -41.33757 -40.51820 -39.40770 -36.82292 -35.85471 -34.69458 -33.15266 -32.66441 -31.92053 -29.89419 -28.74089 -27.57120 -26.56262 -25.44227 -23.25349 -21.90710 -21.35174 -20.46099 -19.92529 -19.05023 -18.04166 -17.49452 -17.33109 -16.93931 -16.65015 -16.44357 -15.84173 -15.14165 -14.85734 -14.68757 -14.44083 -14.09435 -13.98520 -13.64035 -13.20935 -13.15178 -12.93048 -12.64199 -12.54478 -12.44852 -12.20282 -11.72973 -11.28676 -11.15868 -11.11935 -10.96068 -10.86598 -10.57889 -10.51103 -10.41633 -10.14341 -9.63250 -9.20073 -9.18244 -8.61596 -8.40513 -8.09434 -7.62025 -6.01443 -4.05844 1.71590 1.84990 2.10934 2.43301 2.54343 3.05264 3.32494 3.33254 3.39345 3.45075 4.02971 4.29195 4.37253 4.41270 4.53318 4.70276 4.74679 4.83214 4.86478 5.15482 5.21518 5.32708 5.40865 5.46783 5.54986 5.85179 5.96789 6.00538 6.03796 6.17733 6.51418 6.73607 6.82330 6.95083 6.99942 7.25421 7.31730 7.41932 7.51166 7.58025 7.93376 8.00797 8.25592 8.60167 8.94877 9.23623 9.59209 11.06486 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.017787 B = 0.002827 C = 0.002536 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1573.803224 B = 9902.439379 C =11036.595640 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C -0.172 4.172 3 C 0.135 3.865 4 N -0.600 5.600 5 C 0.262 3.738 6 C -0.526 4.526 7 H 0.058 0.942 8 C 0.061 3.939 9 N -0.894 5.894 10 Si 0.898 3.102 11 H -0.281 1.281 12 H -0.286 1.286 13 H -0.274 1.274 14 C 0.708 3.292 15 O -0.560 6.560 16 N -0.656 5.656 17 C 0.334 3.666 18 C -0.248 4.248 19 C 0.055 3.945 20 N -0.380 5.380 21 C 0.159 3.841 22 C 0.440 3.560 23 O -0.471 6.471 24 O -0.363 6.363 25 C 0.038 3.962 26 N -0.316 5.316 27 H 0.094 0.906 28 H 0.100 0.900 29 H 0.105 0.895 30 H 0.093 0.907 31 H 0.068 0.932 32 H 0.036 0.964 33 H 0.046 0.954 34 H 0.263 0.737 35 H 0.406 0.594 36 H 0.179 0.821 37 H 0.177 0.823 38 H 0.124 0.876 39 H 0.137 0.863 40 H 0.064 0.936 41 H 0.102 0.898 42 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.543 -13.136 -16.944 24.350 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C -0.191 4.191 3 C 0.011 3.989 4 N -0.334 5.334 5 C 0.143 3.857 6 C -0.565 4.565 7 H 0.076 0.924 8 C -0.141 4.141 9 N -0.533 5.533 10 Si 0.726 3.274 11 H -0.207 1.207 12 H -0.211 1.211 13 H -0.199 1.199 14 C 0.409 3.591 15 O -0.435 6.435 16 N -0.309 5.309 17 C 0.075 3.925 18 C -0.278 4.278 19 C -0.087 4.087 20 N -0.166 5.166 21 C 0.035 3.965 22 C 0.279 3.721 23 O -0.354 6.354 24 O -0.280 6.280 25 C -0.056 4.056 26 N -0.146 5.146 27 H 0.113 0.887 28 H 0.118 0.882 29 H 0.123 0.877 30 H 0.112 0.888 31 H 0.086 0.914 32 H 0.054 0.946 33 H 0.064 0.936 34 H 0.073 0.927 35 H 0.243 0.757 36 H 0.196 0.804 37 H 0.194 0.806 38 H 0.141 0.859 39 H 0.155 0.845 40 H 0.083 0.917 41 H 0.121 0.879 42 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 11.485 -13.503 -17.148 24.664 hybrid contribution -0.216 0.918 0.404 1.026 sum 11.268 -12.585 -16.744 23.785 Atomic orbital electron populations 1.23815 0.95766 1.01802 1.00259 1.23456 0.96556 0.98979 1.00147 1.20569 0.93249 0.95775 0.89284 1.47563 1.08496 1.62982 1.14342 1.19265 0.95346 0.93580 0.77484 1.21460 1.40436 0.93349 1.01258 0.92400 1.24920 0.95117 0.98709 0.95312 1.69938 1.42109 1.36113 1.05186 0.86501 0.78579 0.85049 0.77305 1.20718 1.21126 1.19900 1.15729 0.83326 0.78505 0.81508 1.90809 1.52362 1.61382 1.38956 1.42110 1.10107 1.64563 1.14144 1.18959 0.86241 0.94754 0.92529 1.22056 0.91195 1.11446 1.03151 1.22554 1.00865 1.00928 0.84377 1.47425 1.09431 1.51035 1.08720 1.20812 0.90642 0.90926 0.94152 1.23854 0.85082 0.85327 0.77828 1.90786 1.19421 1.68145 1.57088 1.86463 1.48495 1.38252 1.54747 1.23274 0.98721 0.84391 0.99210 1.77403 0.91202 1.25429 1.20554 0.88745 0.88191 0.87725 0.88836 0.91400 0.94616 0.93565 0.92738 0.75745 0.80360 0.80596 0.85862 0.84544 0.91734 0.87921 0.91851 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.39 14.32 29.01 0.42 -1.97 16 2 C -0.17 -2.56 9.85 -36.02 -0.35 -2.91 16 3 C 0.14 2.25 5.61 -5.19 -0.03 2.22 16 4 N -0.60 -12.88 2.44 -182.19 -0.44 -13.33 16 5 C 0.26 6.83 5.16 -5.19 -0.03 6.80 16 6 C -0.53 -14.82 9.39 -34.44 -0.32 -15.14 16 7 H 0.06 1.64 7.81 -52.49 -0.41 1.23 16 8 C 0.06 1.75 5.46 -17.81 -0.10 1.65 16 9 N -0.89 -26.46 13.29 55.43 0.74 -25.72 16 10 Si 0.90 21.86 29.54 -169.99 -5.02 16.84 16 11 H -0.28 -6.65 7.11 56.52 0.40 -6.24 16 12 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 13 H -0.27 -6.68 7.11 56.52 0.40 -6.28 16 14 C 0.71 15.51 8.25 -86.92 -0.72 14.79 16 15 O -0.56 -14.14 13.05 5.28 0.07 -14.07 16 16 N -0.66 -12.01 5.32 -15.51 -0.08 -12.10 16 17 C 0.33 6.11 8.11 -154.36 -1.25 4.86 16 18 C -0.25 -4.31 9.61 -39.84 -0.38 -4.69 16 19 C 0.05 0.70 11.44 -17.24 -0.20 0.51 16 20 N -0.38 -4.95 3.40 -62.56 -0.21 -5.17 16 21 C 0.16 1.27 7.10 -5.20 -0.04 1.23 16 22 C 0.44 4.64 7.99 36.01 0.29 4.93 16 23 O -0.47 -7.11 15.45 -18.75 -0.29 -7.40 16 24 O -0.36 -3.05 10.57 -39.27 -0.41 -3.47 16 25 C 0.04 0.25 10.56 101.05 1.07 1.31 16 26 N -0.32 -5.33 11.66 31.44 0.37 -4.97 16 27 H 0.09 1.11 8.06 -52.48 -0.42 0.68 16 28 H 0.10 1.29 7.84 -52.49 -0.41 0.88 16 29 H 0.10 1.56 8.06 -52.49 -0.42 1.13 16 30 H 0.09 1.58 7.72 -51.93 -0.40 1.17 16 31 H 0.07 0.96 6.36 -51.93 -0.33 0.63 16 32 H 0.04 0.94 8.07 -51.93 -0.42 0.52 16 33 H 0.05 1.36 7.42 -51.93 -0.39 0.97 16 34 H 0.26 7.35 8.31 -40.82 -0.34 7.02 16 35 H 0.41 6.39 6.56 -40.82 -0.27 6.12 16 36 H 0.18 3.49 5.91 -52.48 -0.31 3.18 16 37 H 0.18 1.40 8.06 -52.48 -0.42 0.97 16 38 H 0.12 0.71 8.14 -51.93 -0.42 0.29 16 39 H 0.14 0.49 8.07 -51.93 -0.42 0.08 16 40 H 0.06 0.45 8.13 -51.93 -0.42 0.03 16 41 H 0.10 0.35 8.14 -51.93 -0.42 -0.07 16 42 H 0.06 0.43 8.13 -51.93 -0.42 0.01 16 LS Contribution 369.64 15.07 5.57 5.57 Total: -1.00 -37.59 369.64 -6.82 -44.41 By element: Atomic # 1 Polarization: 11.26 SS G_CDS: -5.45 Total: 5.82 kcal Atomic # 6 Polarization: 15.23 SS G_CDS: -1.65 Total: 13.58 kcal Atomic # 7 Polarization: -61.64 SS G_CDS: 0.36 Total: -61.28 kcal Atomic # 8 Polarization: -24.30 SS G_CDS: -0.64 Total: -24.93 kcal Atomic # 14 Polarization: 21.86 SS G_CDS: -5.02 Total: 16.84 kcal Total LS contribution 5.57 Total: 5.57 kcal Total: -37.59 -6.82 -44.41 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000293457119.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.626 kcal (2) G-P(sol) polarization free energy of solvation -37.589 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.037 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.817 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.406 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.220 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds