Wall clock time and date at job start Fri Apr 10 2020 18:27:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31001 * 1 3 3 C 1.50703 * 119.99899 * 2 1 4 4 N 1.46496 * 109.47067 * 124.99726 * 3 2 1 5 5 C 1.46499 * 119.99934 * 269.99675 * 4 3 2 6 6 C 1.50700 * 109.46912 * 270.00300 * 5 4 3 7 7 H 1.08000 * 120.00441 * 359.97438 * 6 5 4 8 8 C 1.37882 * 120.00073 * 180.02562 * 6 5 4 9 9 N 1.31522 * 119.99555 * 359.97438 * 8 6 5 10 10 Si 1.86794 * 120.00282 * 180.02562 * 8 6 5 11 11 H 1.48501 * 109.47544 * 89.99538 * 10 8 6 12 12 H 1.48509 * 109.47229 * 209.99795 * 10 8 6 13 13 H 1.48498 * 109.47070 * 329.99444 * 10 8 6 14 14 C 1.34777 * 120.00001 * 90.00069 * 4 3 2 15 15 O 1.21593 * 119.99923 * 179.97438 * 14 4 3 16 16 N 1.34777 * 120.00128 * 359.97438 * 14 4 3 17 17 C 1.40194 * 119.99945 * 180.27819 * 16 14 4 18 18 C 1.40400 * 125.97290 * 359.43673 * 17 16 14 19 19 C 1.35239 * 107.86845 * 179.86648 * 18 17 16 20 20 N 1.34968 * 107.85956 * 0.39102 * 19 18 17 21 21 C 1.46493 * 125.97621 * 179.71462 * 20 19 18 22 22 C 1.50701 * 109.46941 * 125.02106 * 21 20 19 23 23 O 1.20823 * 120.00344 * 0.02562 * 22 21 20 24 24 O 1.34236 * 119.99594 * 179.97438 * 22 21 20 25 25 C 1.45202 * 116.99623 * 179.97438 * 24 22 21 26 26 N 1.31208 * 125.97117 * 179.74638 * 17 16 14 27 27 H 1.08005 * 119.99659 * 180.02562 * 1 2 3 28 28 H 1.07996 * 120.00388 * 0.02562 * 1 2 3 29 29 H 1.08000 * 119.99710 * 179.97438 * 2 1 3 30 30 H 1.08999 * 109.46723 * 4.99296 * 3 2 1 31 31 H 1.09005 * 109.46546 * 244.99420 * 3 2 1 32 32 H 1.08996 * 109.47092 * 30.00115 * 5 4 3 33 33 H 1.08998 * 109.47416 * 150.00325 * 5 4 3 34 34 H 0.96996 * 119.99369 * 180.02562 * 9 8 6 35 35 H 0.97001 * 119.99727 * 359.97438 * 16 14 4 36 36 H 1.08006 * 126.06402 * 0.02562 * 18 17 16 37 37 H 1.08007 * 126.07492 * 180.11339 * 19 18 17 38 38 H 1.09001 * 109.47207 * 245.01894 * 21 20 19 39 39 H 1.09001 * 109.47468 * 5.02133 * 21 20 19 40 40 H 1.09005 * 109.47470 * 60.00056 * 25 24 22 41 41 H 1.08995 * 109.47237 * 180.02562 * 25 24 22 42 42 H 1.08997 * 109.47272 * 300.00440 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 7 2.9937 1.3320 1.1314 5 6 2.5587 1.8651 2.4248 6 6 2.8441 3.3438 2.4802 7 1 3.3039 3.8370 1.6366 8 6 2.5192 4.0668 3.6083 9 7 1.9597 3.4660 4.6359 10 14 2.8722 5.8998 3.6768 11 1 1.6989 6.6496 3.1607 12 1 3.1370 6.3008 5.0820 13 1 4.0616 6.2063 2.8422 14 6 4.2496 0.8662 0.9825 15 8 5.0218 0.8889 1.9214 16 7 4.6497 0.3754 -0.2073 17 6 5.9543 -0.1144 -0.3606 18 6 6.9462 -0.1437 0.6326 19 6 8.0585 -0.6912 0.0922 20 7 7.7886 -0.9904 -1.1960 21 6 8.7192 -1.5954 -2.1521 22 6 8.1021 -2.8410 -2.7341 23 8 6.9981 -3.1875 -2.3864 24 8 8.7786 -3.5649 -3.6398 25 6 8.1229 -4.7527 -4.1571 26 7 6.4635 -0.6203 -1.4589 27 1 -0.5400 -0.9354 0.0004 28 1 -0.5400 0.9352 -0.0004 29 1 1.8500 -0.9353 0.0004 30 1 1.3585 2.1316 0.0894 31 1 2.6214 1.4025 -0.9314 32 1 1.4886 1.6968 2.5458 33 1 3.0988 1.3606 3.2260 34 1 1.7308 3.9748 5.4294 35 1 4.0335 0.3569 -0.9562 36 1 6.8391 0.2063 1.6487 37 1 8.9976 -0.8555 0.5998 38 1 8.9298 -0.8861 -2.9526 39 1 9.6472 -1.8538 -1.6422 40 1 7.1906 -4.4694 -4.6458 41 1 8.7766 -5.2438 -4.8778 42 1 7.9092 -5.4366 -3.3358 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000293457119.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:27:59 Heat of formation + Delta-G solvation = -6.042118 kcal Electronic energy + Delta-G solvation = -26696.959552 eV Core-core repulsion = 22680.355520 eV Total energy + Delta-G solvation = -4016.604032 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 322.147 amu Computer time = 1.37 seconds Orbital eigenvalues (eV) -42.47605 -41.47916 -40.90285 -37.66159 -37.38423 -36.16462 -35.00957 -33.89312 -33.44632 -31.08485 -29.79035 -29.19937 -27.46943 -26.91737 -25.15139 -22.89580 -22.70417 -21.58508 -21.19915 -20.47950 -18.96762 -18.84074 -18.53945 -18.39885 -17.89418 -17.61296 -17.05826 -16.66597 -16.41221 -15.95190 -15.87574 -15.56850 -14.85641 -14.81428 -14.50506 -14.32449 -14.22129 -14.14976 -13.87803 -13.39054 -13.28002 -13.08111 -13.02311 -12.87324 -12.55208 -12.31859 -12.19451 -12.08162 -11.85199 -11.76381 -11.65635 -11.52755 -10.94742 -10.60436 -10.37879 -9.85635 -9.63279 -9.13084 -8.18479 -6.32668 0.71396 0.99140 1.07620 1.30271 1.39467 1.42241 1.52189 1.57428 1.73931 2.08498 2.37909 2.47034 2.98672 3.11602 3.62342 3.75415 3.95497 4.02341 4.16046 4.19440 4.28775 4.29344 4.30225 4.40562 4.57273 4.69441 4.76452 4.88280 4.94858 5.01161 5.20254 5.23251 5.27507 5.53123 5.66226 5.70548 5.78811 5.87189 5.94604 6.07120 6.09010 6.58723 6.66573 6.75397 7.05456 7.33301 7.57355 8.88468 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.017787 B = 0.002827 C = 0.002536 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1573.803224 B = 9902.439379 C =11036.595640 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C -0.191 4.191 3 C 0.134 3.866 4 N -0.604 5.604 5 C 0.282 3.718 6 C -0.541 4.541 7 H 0.052 0.948 8 C 0.010 3.990 9 N -0.927 5.927 10 Si 0.967 3.033 11 H -0.264 1.264 12 H -0.281 1.281 13 H -0.275 1.275 14 C 0.706 3.294 15 O -0.602 6.602 16 N -0.643 5.643 17 C 0.304 3.696 18 C -0.301 4.301 19 C 0.095 3.905 20 N -0.370 5.370 21 C 0.149 3.851 22 C 0.443 3.557 23 O -0.526 6.526 24 O -0.354 6.354 25 C 0.031 3.969 26 N -0.334 5.334 27 H 0.116 0.884 28 H 0.106 0.894 29 H 0.103 0.897 30 H 0.091 0.909 31 H 0.092 0.908 32 H 0.029 0.971 33 H 0.003 0.997 34 H 0.267 0.733 35 H 0.416 0.584 36 H 0.148 0.852 37 H 0.233 0.767 38 H 0.154 0.846 39 H 0.193 0.807 40 H 0.054 0.946 41 H 0.138 0.862 42 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.441 -13.216 -19.046 26.797 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.211 4.211 3 C 0.011 3.989 4 N -0.338 5.338 5 C 0.161 3.839 6 C -0.580 4.580 7 H 0.070 0.930 8 C -0.189 4.189 9 N -0.566 5.566 10 Si 0.792 3.208 11 H -0.189 1.189 12 H -0.206 1.206 13 H -0.200 1.200 14 C 0.407 3.593 15 O -0.480 6.480 16 N -0.297 5.297 17 C 0.047 3.953 18 C -0.331 4.331 19 C -0.050 4.050 20 N -0.156 5.156 21 C 0.028 3.972 22 C 0.285 3.715 23 O -0.414 6.414 24 O -0.270 6.270 25 C -0.062 4.062 26 N -0.164 5.164 27 H 0.134 0.866 28 H 0.124 0.876 29 H 0.121 0.879 30 H 0.109 0.891 31 H 0.110 0.890 32 H 0.047 0.953 33 H 0.021 0.979 34 H 0.076 0.924 35 H 0.255 0.745 36 H 0.165 0.835 37 H 0.249 0.751 38 H 0.172 0.828 39 H 0.210 0.790 40 H 0.073 0.927 41 H 0.156 0.844 42 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 13.387 -13.615 -19.361 27.192 hybrid contribution -0.695 0.780 0.931 1.400 sum 12.691 -12.835 -18.430 25.797 Atomic orbital electron populations 1.24064 0.95195 1.03148 0.97298 1.23286 0.97090 0.97906 1.02799 1.20787 0.92832 0.96855 0.88402 1.47404 1.09345 1.62827 1.14233 1.18696 0.94024 0.92535 0.78683 1.21690 1.40550 0.94343 1.01388 0.92961 1.25808 0.94703 1.03584 0.94799 1.70054 1.42807 1.38018 1.05762 0.85425 0.78758 0.79258 0.77399 1.18908 1.20598 1.19957 1.15816 0.83015 0.78445 0.82035 1.90786 1.53570 1.63021 1.40665 1.41724 1.10889 1.64003 1.13087 1.19181 0.86212 0.96288 0.93615 1.21933 0.93425 1.15343 1.02417 1.23156 1.01091 0.96945 0.83768 1.47835 1.08552 1.49476 1.09703 1.21531 0.90690 0.90135 0.94830 1.24343 0.84304 0.85654 0.77232 1.90787 1.21818 1.69712 1.59054 1.86468 1.48041 1.38575 1.53917 1.23519 0.99330 0.83713 0.99640 1.77313 0.93458 1.25403 1.20215 0.86599 0.87571 0.87903 0.89063 0.88989 0.95327 0.97931 0.92400 0.74536 0.83479 0.75055 0.82836 0.78976 0.92673 0.84436 0.92371 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.08 14.32 67.78 0.97 -3.11 16 2 C -0.19 -5.71 9.85 25.65 0.25 -5.46 16 3 C 0.13 4.52 5.61 85.63 0.48 5.00 16 4 N -0.60 -27.23 2.44 -848.57 -2.07 -29.30 16 5 C 0.28 15.47 5.16 85.63 0.44 15.92 16 6 C -0.54 -31.47 9.39 25.60 0.24 -31.23 16 7 H 0.05 3.03 7.81 -2.91 -0.02 3.01 16 8 C 0.01 0.59 5.46 84.65 0.46 1.05 16 9 N -0.93 -56.14 13.29 21.45 0.28 -55.86 16 10 Si 0.97 45.26 29.54 68.60 2.03 47.29 16 11 H -0.26 -11.59 7.11 99.48 0.71 -10.89 16 12 H -0.28 -12.83 7.11 99.48 0.71 -12.12 16 13 H -0.27 -12.79 7.11 99.48 0.71 -12.08 16 14 C 0.71 32.72 8.25 179.05 1.48 34.19 16 15 O -0.60 -32.66 13.05 -4.01 -0.05 -32.71 16 16 N -0.64 -24.62 5.32 -321.23 -1.71 -26.33 16 17 C 0.30 11.43 8.11 133.31 1.08 12.51 16 18 C -0.30 -10.71 9.61 22.10 0.21 -10.50 16 19 C 0.09 2.20 11.44 83.52 0.96 3.16 16 20 N -0.37 -8.71 3.40 -351.85 -1.20 -9.91 16 21 C 0.15 1.75 7.10 85.63 0.61 2.35 16 22 C 0.44 8.28 7.99 71.24 0.57 8.85 16 23 O -0.53 -15.51 15.45 21.97 0.34 -15.17 16 24 O -0.35 -4.97 10.57 -51.47 -0.54 -5.51 16 25 C 0.03 0.35 10.56 113.37 1.20 1.54 16 26 N -0.33 -11.10 11.66 -54.44 -0.63 -11.73 16 27 H 0.12 2.48 8.06 -2.91 -0.02 2.46 16 28 H 0.11 2.59 7.84 -2.91 -0.02 2.57 16 29 H 0.10 3.11 8.06 -2.91 -0.02 3.09 16 30 H 0.09 3.11 7.72 -2.39 -0.02 3.09 16 31 H 0.09 2.61 6.36 -2.38 -0.02 2.59 16 32 H 0.03 1.59 8.07 -2.39 -0.02 1.57 16 33 H 0.00 0.16 7.42 -2.39 -0.02 0.14 16 34 H 0.27 15.16 8.31 -92.71 -0.77 14.39 16 35 H 0.42 13.51 6.56 -92.71 -0.61 12.91 16 36 H 0.15 6.20 5.91 -2.91 -0.02 6.18 16 37 H 0.23 2.53 8.06 -2.91 -0.02 2.51 16 38 H 0.15 1.02 8.14 -2.39 -0.02 1.00 16 39 H 0.19 0.15 8.07 -2.39 -0.02 0.13 16 40 H 0.05 0.73 8.13 -2.38 -0.02 0.71 16 41 H 0.14 0.53 8.14 -2.39 -0.02 0.51 16 42 H 0.06 0.72 8.13 -2.39 -0.02 0.70 16 Total: -1.00 -88.32 369.64 5.83 -82.48 By element: Atomic # 1 Polarization: 22.03 SS G_CDS: 0.44 Total: 22.47 kcal Atomic # 6 Polarization: 25.34 SS G_CDS: 8.95 Total: 34.28 kcal Atomic # 7 Polarization: -127.80 SS G_CDS: -5.32 Total: -133.13 kcal Atomic # 8 Polarization: -53.14 SS G_CDS: -0.26 Total: -53.40 kcal Atomic # 14 Polarization: 45.26 SS G_CDS: 2.03 Total: 47.29 kcal Total: -88.32 5.83 -82.48 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000293457119.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.440 kcal (2) G-P(sol) polarization free energy of solvation -88.316 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.876 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.834 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.482 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.042 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.37 seconds