Wall clock time and date at job start Fri Apr 10 2020 18:28:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31623 * 1 3 3 Si 1.86802 * 119.99556 * 2 1 4 4 H 1.48497 * 109.47373 * 240.00023 * 3 2 1 5 5 H 1.48502 * 109.47421 * 0.02562 * 3 2 1 6 6 H 1.48504 * 109.46820 * 120.00432 * 3 2 1 7 7 C 1.38807 * 120.00381 * 180.02562 * 2 1 3 8 8 H 1.08004 * 119.99984 * 156.70239 * 7 2 1 9 9 N 1.36940 * 119.99922 * 336.70692 * 7 2 1 10 10 C 1.46924 * 120.62815 * 334.74021 * 9 7 2 11 11 C 1.53199 * 108.77650 * 233.59058 * 10 9 7 12 12 C 1.53046 * 109.30975 * 305.36545 * 11 10 9 13 13 C 1.52994 * 109.45956 * 181.38505 * 12 11 10 14 14 N 1.46501 * 109.47491 * 175.00260 * 13 12 11 15 15 C 1.38394 * 120.00000 * 180.02562 * 14 13 12 16 16 N 1.32499 * 119.17991 * 359.97438 * 15 14 13 17 17 C 1.32486 * 120.92968 * 180.02562 * 16 15 14 18 18 C 1.38135 * 119.29003 * 0.02562 * 17 16 15 19 19 N 1.48019 * 120.75137 * 180.02562 * 18 17 16 20 20 O 1.21804 * 120.00210 * 5.83926 * 19 18 17 21 21 O 1.21803 * 119.99820 * 185.84025 * 19 18 17 22 22 C 1.39643 * 118.49158 * 359.97438 * 18 17 16 23 23 N 1.38529 * 120.48212 * 179.97438 * 22 18 17 24 24 N 1.32446 * 119.17340 * 180.02562 * 15 14 13 25 25 C 1.53045 * 109.53535 * 61.36568 * 12 11 10 26 26 C 1.46923 * 120.63054 * 154.72431 * 9 7 2 27 27 H 0.96991 * 120.00020 * 359.97438 * 1 2 3 28 28 H 1.08999 * 109.58575 * 113.80399 * 10 9 7 29 29 H 1.09000 * 109.70518 * 353.44721 * 10 9 7 30 30 H 1.08996 * 109.49624 * 185.41924 * 11 10 9 31 31 H 1.08998 * 109.49434 * 65.31547 * 11 10 9 32 32 H 1.08999 * 109.46052 * 301.36169 * 12 11 10 33 33 H 1.09003 * 109.47364 * 54.99608 * 13 12 11 34 34 H 1.09000 * 109.47017 * 295.00300 * 13 12 11 35 35 H 0.97004 * 119.99513 * 359.97438 * 14 13 12 36 36 H 1.08000 * 120.35695 * 180.02562 * 17 16 15 37 37 H 0.97000 * 119.99823 * 202.10779 * 23 22 18 38 38 H 0.97000 * 120.00417 * 22.10801 * 23 22 18 39 39 H 1.08997 * 109.49967 * 58.58850 * 25 12 11 40 40 H 1.09001 * 109.49313 * 178.68036 * 25 12 11 41 41 H 1.09004 * 109.58260 * 246.19560 * 26 9 7 42 42 H 1.08995 * 109.59142 * 6.47672 * 26 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.1039 1.6966 -1.2125 5 1 1.2851 2.7465 0.0006 6 1 3.1039 1.6964 1.2125 7 6 2.0103 -1.2021 -0.0005 8 1 3.0243 -1.2400 -0.3705 9 7 1.4094 -2.3399 0.4679 10 6 0.3158 -2.2606 1.4459 11 6 0.6645 -3.1436 2.6482 12 6 0.9715 -4.5620 2.1623 13 6 1.2865 -5.4554 3.3637 14 7 1.4633 -6.8376 2.9116 15 6 1.7568 -7.8330 3.8272 16 7 1.8749 -7.5176 5.1086 17 6 2.1557 -8.4427 6.0145 18 6 2.3272 -9.7528 5.6118 19 7 2.6411 -10.8124 6.5966 20 8 2.6462 -10.5552 7.7872 21 8 2.8943 -11.9415 6.2164 22 6 2.1967 -10.0551 4.2548 23 7 2.3608 -11.3552 3.8055 24 7 1.9138 -9.0769 3.4004 25 6 2.1773 -4.5305 1.2203 26 6 1.8458 -3.6632 0.0019 27 1 -0.4850 0.8400 0.0004 28 1 -0.6089 -2.6134 0.9893 29 1 0.1907 -1.2288 1.7744 30 1 -0.1797 -3.1699 3.3372 31 1 1.5379 -2.7364 3.1575 32 1 0.1065 -4.9592 1.6313 33 1 0.4635 -5.4087 4.0769 34 1 2.2026 -5.1100 3.8430 35 1 1.3738 -7.0552 1.9705 36 1 2.2494 -8.1753 7.0567 37 1 2.5884 -11.5225 2.8775 38 1 2.2481 -12.0982 4.4188 39 1 3.0365 -4.1103 1.7431 40 1 2.4099 -5.5439 0.8931 41 1 1.0458 -4.1304 -0.5725 42 1 2.7311 -3.5563 -0.6249 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000301602567.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:28:05 Heat of formation + Delta-G solvation = 73.668025 kcal Electronic energy + Delta-G solvation = -26552.146395 eV Core-core repulsion = 22571.291605 eV Total energy + Delta-G solvation = -3980.854790 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 322.154 amu Computer time = 2.27 seconds Orbital eigenvalues (eV) -42.53557 -41.27226 -38.46760 -37.15596 -36.49018 -35.46264 -33.81018 -32.62582 -31.31862 -30.74736 -29.82448 -27.30299 -26.05147 -24.68339 -24.00896 -23.07625 -22.20018 -21.24022 -19.63716 -19.50414 -19.24378 -18.68082 -18.32190 -17.78696 -16.86850 -16.61455 -16.12198 -15.80275 -15.11978 -14.81447 -14.48458 -14.33510 -13.87225 -13.62786 -13.37643 -12.84149 -12.78714 -12.43823 -12.42854 -12.11728 -11.77923 -11.49832 -11.40477 -11.30647 -11.15840 -11.04840 -10.75609 -10.62634 -10.37383 -10.31645 -9.99789 -9.84719 -9.65439 -9.58284 -9.43291 -8.79035 -8.50363 -6.79898 -5.87144 -3.23422 -0.29317 0.70828 1.09863 1.18971 2.21389 2.86074 3.21143 3.34776 3.41533 3.43127 3.61384 3.85423 4.12023 4.45390 4.64520 4.88946 5.03044 5.14204 5.23084 5.29961 5.47737 5.67874 5.72435 5.85355 5.92614 6.02570 6.11099 6.19159 6.30586 6.44467 6.46451 6.48715 6.56404 6.61692 6.68200 6.76336 6.86628 7.13710 7.24710 7.46041 7.52235 7.74461 7.76067 8.35700 9.13354 9.78549 10.33909 11.21888 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.035206 B = 0.002139 C = 0.002089 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 795.119074 B =13087.196270 C =13401.841425 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.898 5.898 2 C 0.003 3.997 3 Si 0.898 3.102 4 H -0.283 1.283 5 H -0.291 1.291 6 H -0.284 1.284 7 C -0.257 4.257 8 H 0.066 0.934 9 N -0.592 5.592 10 C 0.171 3.829 11 C -0.131 4.131 12 C -0.092 4.092 13 C 0.130 3.870 14 N -0.662 5.662 15 C 0.628 3.372 16 N -0.576 5.576 17 C 0.299 3.701 18 C -0.278 4.278 19 N 0.071 4.929 20 O -0.169 6.169 21 O -0.204 6.204 22 C 0.539 3.461 23 N -0.813 5.813 24 N -0.617 5.617 25 C -0.129 4.129 26 C 0.145 3.855 27 H 0.255 0.745 28 H 0.018 0.982 29 H 0.087 0.913 30 H 0.053 0.947 31 H 0.060 0.940 32 H 0.071 0.929 33 H 0.074 0.926 34 H 0.076 0.924 35 H 0.421 0.579 36 H 0.193 0.807 37 H 0.413 0.587 38 H 0.426 0.574 39 H 0.061 0.939 40 H 0.046 0.954 41 H 0.016 0.984 42 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.501 -19.816 9.424 22.085 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.542 5.542 2 C -0.195 4.195 3 Si 0.727 3.273 4 H -0.209 1.209 5 H -0.216 1.216 6 H -0.210 1.210 7 C -0.386 4.386 8 H 0.084 0.916 9 N -0.314 5.314 10 C 0.045 3.955 11 C -0.170 4.170 12 C -0.111 4.111 13 C 0.007 3.993 14 N -0.292 5.292 15 C 0.270 3.730 16 N -0.303 5.303 17 C 0.125 3.875 18 C -0.380 4.380 19 N 0.579 4.421 20 O -0.383 6.383 21 O -0.405 6.405 22 C 0.285 3.715 23 N -0.364 5.364 24 N -0.354 5.354 25 C -0.168 4.168 26 C 0.019 3.981 27 H 0.065 0.935 28 H 0.036 0.964 29 H 0.105 0.895 30 H 0.072 0.928 31 H 0.079 0.921 32 H 0.089 0.911 33 H 0.092 0.908 34 H 0.094 0.906 35 H 0.260 0.740 36 H 0.210 0.790 37 H 0.245 0.755 38 H 0.266 0.734 39 H 0.080 0.920 40 H 0.065 0.935 41 H 0.034 0.966 42 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 1.992 -18.276 8.277 20.162 hybrid contribution 0.644 -0.523 0.209 0.855 sum 2.636 -18.799 8.486 20.794 Atomic orbital electron populations 1.70093 1.05326 1.25800 1.52984 1.24929 0.95114 0.98477 1.01029 0.86442 0.79137 0.83509 0.78205 1.20885 1.21645 1.21026 1.19123 0.95171 0.85959 1.38339 0.91633 1.44078 1.40439 1.00474 1.46440 1.20748 0.89191 0.99090 0.86510 1.22158 1.00713 0.93792 1.00372 1.21369 0.99102 0.96119 0.94534 1.21864 1.02424 0.77130 0.97874 1.44805 1.69569 1.06106 1.08730 1.19331 0.82770 0.84746 0.86110 1.68437 1.26247 1.35051 1.00592 1.22803 0.79811 0.84383 1.00483 1.22023 1.34391 0.91755 0.89813 1.42939 0.96794 1.01023 1.01367 1.94541 1.56720 1.87748 0.99285 1.94306 1.54415 1.07639 1.84108 1.17645 0.81565 0.87173 0.85164 1.42939 1.73578 1.03225 1.16642 1.67756 1.31096 0.99772 1.36813 1.22097 0.97273 0.98869 0.98552 1.20870 0.97493 0.86924 0.92833 0.93541 0.96385 0.89520 0.92844 0.92138 0.91061 0.90784 0.90582 0.74023 0.79040 0.75537 0.73357 0.91976 0.93505 0.96574 0.92766 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 36. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -25.38 11.41 55.49 0.63 -24.75 16 2 C 0.00 0.09 4.77 -17.43 -0.08 0.01 16 3 Si 0.90 21.14 29.61 -169.99 -5.03 16.11 16 4 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 5 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 6 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 7 C -0.26 -6.81 9.57 -15.06 -0.14 -6.96 16 8 H 0.07 1.72 7.92 -52.48 -0.42 1.30 16 9 N -0.59 -14.01 3.00 -172.32 -0.52 -14.52 16 10 C 0.17 3.77 5.37 -3.71 -0.02 3.75 16 11 C -0.13 -2.18 5.36 -26.60 -0.14 -2.32 16 12 C -0.09 -1.27 2.19 -90.58 -0.20 -1.47 16 13 C 0.13 1.49 5.04 -4.04 -0.02 1.47 16 14 N -0.66 -7.08 5.42 -62.32 -0.34 -7.42 16 15 C 0.63 7.18 8.42 -322.88 -2.72 4.46 16 16 N -0.58 -6.40 9.58 -14.02 -0.13 -6.54 16 17 C 0.30 2.86 10.81 -17.31 -0.19 2.67 16 18 C -0.28 -2.88 6.90 -79.46 -0.55 -3.42 16 19 N 0.07 0.79 4.45 34.20 0.15 0.94 16 20 O -0.17 -1.99 18.55 -29.46 -0.55 -2.54 16 21 O -0.20 -2.25 16.02 -29.46 -0.47 -2.72 16 22 C 0.54 5.42 7.80 -154.84 -1.21 4.21 16 23 N -0.81 -5.85 8.62 31.23 0.27 -5.58 16 24 N -0.62 -6.77 10.49 -13.17 -0.14 -6.91 16 25 C -0.13 -1.93 5.25 -26.61 -0.14 -2.07 16 26 C 0.15 2.81 6.52 -3.71 -0.02 2.78 16 27 H 0.25 6.98 8.31 -40.82 -0.34 6.64 16 28 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 29 H 0.09 2.18 6.06 -51.93 -0.31 1.87 16 30 H 0.05 0.79 8.14 -51.93 -0.42 0.37 16 31 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 32 H 0.07 0.99 8.14 -51.93 -0.42 0.57 16 33 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 34 H 0.08 0.92 8.14 -51.93 -0.42 0.50 16 35 H 0.42 4.15 7.76 -40.82 -0.32 3.84 16 36 H 0.19 1.31 7.70 -52.49 -0.40 0.91 16 37 H 0.41 2.16 8.95 -40.82 -0.37 1.79 16 38 H 0.43 2.88 6.08 -40.82 -0.25 2.63 16 39 H 0.06 1.00 8.14 -51.93 -0.42 0.57 16 40 H 0.05 0.59 7.15 -51.93 -0.37 0.22 16 41 H 0.02 0.32 8.14 -51.93 -0.42 -0.11 16 42 H 0.05 1.05 7.92 -51.93 -0.41 0.64 16 LS Contribution 349.45 15.07 5.27 5.27 Total: -1.00 -30.04 349.45 -11.66 -41.69 By element: Atomic # 1 Polarization: 9.20 SS G_CDS: -5.36 Total: 3.83 kcal Atomic # 6 Polarization: 8.56 SS G_CDS: -5.44 Total: 3.13 kcal Atomic # 7 Polarization: -64.70 SS G_CDS: -0.07 Total: -64.77 kcal Atomic # 8 Polarization: -4.24 SS G_CDS: -1.02 Total: -5.26 kcal Atomic # 14 Polarization: 21.14 SS G_CDS: -5.03 Total: 16.11 kcal Total LS contribution 5.27 Total: 5.27 kcal Total: -30.04 -11.66 -41.69 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000301602567.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 115.362 kcal (2) G-P(sol) polarization free energy of solvation -30.035 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 85.327 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.659 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.694 kcal (6) G-S(sol) free energy of system = (1) + (5) 73.668 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.27 seconds