Wall clock time and date at job start Fri Apr 10 2020 18:28:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31623 * 1 3 3 Si 1.86802 * 119.99556 * 2 1 4 4 H 1.48497 * 109.47373 * 240.00023 * 3 2 1 5 5 H 1.48502 * 109.47421 * 0.02562 * 3 2 1 6 6 H 1.48504 * 109.46820 * 120.00432 * 3 2 1 7 7 C 1.38807 * 120.00381 * 180.02562 * 2 1 3 8 8 H 1.08004 * 119.99984 * 156.70239 * 7 2 1 9 9 N 1.36940 * 119.99922 * 336.70692 * 7 2 1 10 10 C 1.46924 * 120.62815 * 334.74021 * 9 7 2 11 11 C 1.53199 * 108.77650 * 233.59058 * 10 9 7 12 12 C 1.53046 * 109.30975 * 305.36545 * 11 10 9 13 13 C 1.52994 * 109.45956 * 181.38505 * 12 11 10 14 14 N 1.46501 * 109.47491 * 175.00260 * 13 12 11 15 15 C 1.38394 * 120.00000 * 180.02562 * 14 13 12 16 16 N 1.32499 * 119.17991 * 359.97438 * 15 14 13 17 17 C 1.32486 * 120.92968 * 180.02562 * 16 15 14 18 18 C 1.38135 * 119.29003 * 0.02562 * 17 16 15 19 19 N 1.48019 * 120.75137 * 180.02562 * 18 17 16 20 20 O 1.21804 * 120.00210 * 5.83926 * 19 18 17 21 21 O 1.21803 * 119.99820 * 185.84025 * 19 18 17 22 22 C 1.39643 * 118.49158 * 359.97438 * 18 17 16 23 23 N 1.38529 * 120.48212 * 179.97438 * 22 18 17 24 24 N 1.32446 * 119.17340 * 180.02562 * 15 14 13 25 25 C 1.53045 * 109.53535 * 61.36568 * 12 11 10 26 26 C 1.46923 * 120.63054 * 154.72431 * 9 7 2 27 27 H 0.96991 * 120.00020 * 359.97438 * 1 2 3 28 28 H 1.08999 * 109.58575 * 113.80399 * 10 9 7 29 29 H 1.09000 * 109.70518 * 353.44721 * 10 9 7 30 30 H 1.08996 * 109.49624 * 185.41924 * 11 10 9 31 31 H 1.08998 * 109.49434 * 65.31547 * 11 10 9 32 32 H 1.08999 * 109.46052 * 301.36169 * 12 11 10 33 33 H 1.09003 * 109.47364 * 54.99608 * 13 12 11 34 34 H 1.09000 * 109.47017 * 295.00300 * 13 12 11 35 35 H 0.97004 * 119.99513 * 359.97438 * 14 13 12 36 36 H 1.08000 * 120.35695 * 180.02562 * 17 16 15 37 37 H 0.97000 * 119.99823 * 202.10779 * 23 22 18 38 38 H 0.97000 * 120.00417 * 22.10801 * 23 22 18 39 39 H 1.08997 * 109.49967 * 58.58850 * 25 12 11 40 40 H 1.09001 * 109.49313 * 178.68036 * 25 12 11 41 41 H 1.09004 * 109.58260 * 246.19560 * 26 9 7 42 42 H 1.08995 * 109.59142 * 6.47672 * 26 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.1039 1.6966 -1.2125 5 1 1.2851 2.7465 0.0006 6 1 3.1039 1.6964 1.2125 7 6 2.0103 -1.2021 -0.0005 8 1 3.0243 -1.2400 -0.3705 9 7 1.4094 -2.3399 0.4679 10 6 0.3158 -2.2606 1.4459 11 6 0.6645 -3.1436 2.6482 12 6 0.9715 -4.5620 2.1623 13 6 1.2865 -5.4554 3.3637 14 7 1.4633 -6.8376 2.9116 15 6 1.7568 -7.8330 3.8272 16 7 1.8749 -7.5176 5.1086 17 6 2.1557 -8.4427 6.0145 18 6 2.3272 -9.7528 5.6118 19 7 2.6411 -10.8124 6.5966 20 8 2.6462 -10.5552 7.7872 21 8 2.8943 -11.9415 6.2164 22 6 2.1967 -10.0551 4.2548 23 7 2.3608 -11.3552 3.8055 24 7 1.9138 -9.0769 3.4004 25 6 2.1773 -4.5305 1.2203 26 6 1.8458 -3.6632 0.0019 27 1 -0.4850 0.8400 0.0004 28 1 -0.6089 -2.6134 0.9893 29 1 0.1907 -1.2288 1.7744 30 1 -0.1797 -3.1699 3.3372 31 1 1.5379 -2.7364 3.1575 32 1 0.1065 -4.9592 1.6313 33 1 0.4635 -5.4087 4.0769 34 1 2.2026 -5.1100 3.8430 35 1 1.3738 -7.0552 1.9705 36 1 2.2494 -8.1753 7.0567 37 1 2.5884 -11.5225 2.8775 38 1 2.2481 -12.0982 4.4188 39 1 3.0365 -4.1103 1.7431 40 1 2.4099 -5.5439 0.8931 41 1 1.0458 -4.1304 -0.5725 42 1 2.7311 -3.5563 -0.6249 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000301602567.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:28:04 Heat of formation + Delta-G solvation = 56.679746 kcal Electronic energy + Delta-G solvation = -26552.883062 eV Core-core repulsion = 22571.291605 eV Total energy + Delta-G solvation = -3981.591457 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 322.154 amu Computer time = 1.29 seconds Orbital eigenvalues (eV) -43.34808 -42.06658 -39.74265 -38.02248 -37.50854 -36.36847 -35.10975 -33.78957 -32.54408 -31.91818 -31.34588 -28.60053 -27.05016 -25.90697 -25.08804 -24.13256 -23.58462 -22.59153 -20.83419 -20.35859 -20.24835 -19.54409 -19.09207 -18.66287 -18.59570 -17.36917 -16.94852 -16.81357 -16.57937 -15.93568 -15.76691 -15.33681 -15.23704 -15.12149 -14.84212 -14.03210 -13.96505 -13.79376 -13.57874 -13.17806 -13.02491 -12.86889 -12.63113 -12.54129 -12.30376 -12.27040 -12.11845 -12.03793 -11.96553 -11.82991 -11.61086 -11.20229 -11.10320 -10.61954 -10.50458 -10.13032 -9.61350 -8.72374 -7.89742 -5.27846 -1.10790 -0.03363 0.27174 0.38120 1.42259 1.46249 1.49254 1.55670 2.14997 2.42476 2.51782 2.90264 3.08788 3.23703 3.35696 3.69646 3.79706 3.91436 3.97621 4.07156 4.44300 4.49923 4.53490 4.68349 4.73458 4.81886 4.93179 5.00151 5.11539 5.20306 5.27428 5.28366 5.30579 5.40822 5.53392 5.66474 5.69658 5.78920 5.83829 5.99042 6.37204 6.49342 6.61959 6.98738 7.14608 7.88373 8.37800 9.16791 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.035206 B = 0.002139 C = 0.002089 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 795.119074 B =13087.196270 C =13401.841425 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.931 5.931 2 C -0.049 4.049 3 Si 0.959 3.041 4 H -0.277 1.277 5 H -0.295 1.295 6 H -0.279 1.279 7 C -0.264 4.264 8 H 0.064 0.936 9 N -0.611 5.611 10 C 0.174 3.826 11 C -0.118 4.118 12 C -0.081 4.081 13 C 0.147 3.853 14 N -0.659 5.659 15 C 0.621 3.379 16 N -0.588 5.588 17 C 0.303 3.697 18 C -0.284 4.284 19 N 0.073 4.927 20 O -0.189 6.189 21 O -0.203 6.203 22 C 0.532 3.468 23 N -0.797 5.797 24 N -0.624 5.624 25 C -0.115 4.115 26 C 0.139 3.861 27 H 0.250 0.750 28 H -0.003 1.003 29 H 0.049 0.951 30 H 0.075 0.925 31 H 0.056 0.944 32 H 0.075 0.925 33 H 0.081 0.919 34 H 0.075 0.925 35 H 0.425 0.575 36 H 0.216 0.784 37 H 0.424 0.576 38 H 0.430 0.570 39 H 0.055 0.945 40 H 0.079 0.921 41 H 0.015 0.985 42 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.339 -21.412 10.205 23.954 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.576 5.576 2 C -0.245 4.245 3 Si 0.787 3.213 4 H -0.203 1.203 5 H -0.221 1.221 6 H -0.205 1.205 7 C -0.394 4.394 8 H 0.082 0.918 9 N -0.335 5.335 10 C 0.048 3.952 11 C -0.158 4.158 12 C -0.100 4.100 13 C 0.024 3.976 14 N -0.290 5.290 15 C 0.263 3.737 16 N -0.315 5.315 17 C 0.130 3.870 18 C -0.386 4.386 19 N 0.578 4.422 20 O -0.398 6.398 21 O -0.405 6.405 22 C 0.277 3.723 23 N -0.348 5.348 24 N -0.361 5.361 25 C -0.154 4.154 26 C 0.013 3.987 27 H 0.059 0.941 28 H 0.015 0.985 29 H 0.068 0.932 30 H 0.093 0.907 31 H 0.074 0.926 32 H 0.093 0.907 33 H 0.100 0.900 34 H 0.093 0.907 35 H 0.265 0.735 36 H 0.232 0.768 37 H 0.257 0.743 38 H 0.270 0.730 39 H 0.074 0.926 40 H 0.097 0.903 41 H 0.033 0.967 42 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges 2.857 -19.932 9.086 22.091 hybrid contribution 0.387 -0.135 -0.118 0.426 sum 3.244 -20.068 8.968 22.218 Atomic orbital electron populations 1.70224 1.06628 1.25987 1.54809 1.25635 0.95820 1.01335 1.01683 0.85467 0.77788 0.79699 0.78309 1.20273 1.22110 1.20538 1.19437 0.95229 0.87330 1.37447 0.91803 1.44371 1.40597 1.01380 1.47134 1.20598 0.88285 0.98182 0.88120 1.21930 1.01351 0.94436 0.98046 1.21186 0.98722 0.94831 0.95281 1.21538 1.02638 0.77072 0.96347 1.44636 1.69816 1.05625 1.08926 1.19456 0.82895 0.84997 0.86366 1.68482 1.26939 1.35447 1.00646 1.23189 0.78582 0.83919 1.01281 1.22110 1.34861 0.91837 0.89774 1.43039 0.96648 1.01154 1.01408 1.94542 1.57694 1.87866 0.99671 1.94294 1.54168 1.07915 1.84092 1.17811 0.81575 0.87820 0.85133 1.42944 1.72132 1.02373 1.17374 1.67777 1.31672 0.99771 1.36912 1.21924 0.97387 0.99435 0.96605 1.21058 0.97028 0.85723 0.94848 0.94102 0.98462 0.93204 0.90653 0.92564 0.90661 0.90044 0.90692 0.73497 0.76790 0.74301 0.72956 0.92647 0.90272 0.96712 0.93269 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -54.19 11.41 21.65 0.25 -53.94 16 2 C -0.05 -2.69 4.77 84.86 0.40 -2.29 16 3 Si 0.96 44.16 29.61 68.60 2.03 46.19 16 4 H -0.28 -12.37 7.11 99.48 0.71 -11.66 16 5 H -0.29 -13.67 7.11 99.48 0.71 -12.96 16 6 H -0.28 -12.52 7.11 99.48 0.71 -11.81 16 7 C -0.26 -14.23 9.57 84.03 0.80 -13.43 16 8 H 0.06 3.38 7.92 -2.91 -0.02 3.35 16 9 N -0.61 -29.26 3.00 -699.10 -2.10 -31.35 16 10 C 0.17 7.84 5.37 86.37 0.46 8.30 16 11 C -0.12 -3.80 5.36 30.68 0.16 -3.64 16 12 C -0.08 -2.06 2.19 -10.77 -0.02 -2.09 16 13 C 0.15 2.96 5.04 86.38 0.43 3.39 16 14 N -0.66 -12.20 5.42 -351.09 -1.90 -14.11 16 15 C 0.62 12.62 8.42 261.51 2.20 14.83 16 16 N -0.59 -11.61 9.58 -198.25 -1.90 -13.51 16 17 C 0.30 5.13 10.81 84.57 0.91 6.05 16 18 C -0.28 -5.30 6.90 36.69 0.25 -5.05 16 19 N 0.07 1.50 4.45 -45.71 -0.20 1.29 16 20 O -0.19 -4.19 18.55 18.88 0.35 -3.84 16 21 O -0.20 -4.13 16.02 18.88 0.30 -3.83 16 22 C 0.53 9.53 7.80 133.19 1.04 10.57 16 23 N -0.80 -9.73 8.62 -55.12 -0.48 -10.21 16 24 N -0.62 -12.20 10.49 -195.57 -2.05 -14.25 16 25 C -0.11 -3.19 5.25 30.67 0.16 -3.03 16 26 C 0.14 5.28 6.52 86.36 0.56 5.84 16 27 H 0.25 14.15 8.31 -92.72 -0.77 13.38 16 28 H 0.00 -0.13 8.14 -2.39 -0.02 -0.15 16 29 H 0.05 2.60 6.06 -2.39 -0.01 2.58 16 30 H 0.07 2.09 8.14 -2.39 -0.02 2.08 16 31 H 0.06 1.87 8.14 -2.39 -0.02 1.85 16 32 H 0.08 1.91 8.14 -2.39 -0.02 1.89 16 33 H 0.08 1.58 8.14 -2.39 -0.02 1.56 16 34 H 0.07 1.58 8.14 -2.39 -0.02 1.57 16 35 H 0.43 7.08 7.76 -92.71 -0.72 6.36 16 36 H 0.22 2.44 7.70 -2.91 -0.02 2.42 16 37 H 0.42 3.44 8.95 -92.71 -0.83 2.61 16 38 H 0.43 4.91 6.08 -92.71 -0.56 4.35 16 39 H 0.05 1.65 8.14 -2.39 -0.02 1.63 16 40 H 0.08 1.72 7.15 -2.39 -0.02 1.71 16 41 H 0.01 0.57 8.14 -2.38 -0.02 0.55 16 42 H 0.05 1.88 7.92 -2.39 -0.02 1.86 16 Total: -1.00 -65.61 349.45 0.67 -64.95 By element: Atomic # 1 Polarization: 14.17 SS G_CDS: -1.01 Total: 13.15 kcal Atomic # 6 Polarization: 12.08 SS G_CDS: 7.38 Total: 19.46 kcal Atomic # 7 Polarization: -127.70 SS G_CDS: -8.38 Total: -136.08 kcal Atomic # 8 Polarization: -8.33 SS G_CDS: 0.65 Total: -7.67 kcal Atomic # 14 Polarization: 44.16 SS G_CDS: 2.03 Total: 46.19 kcal Total: -65.61 0.67 -64.95 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000301602567.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 121.626 kcal (2) G-P(sol) polarization free energy of solvation -65.614 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 56.012 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.668 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.946 kcal (6) G-S(sol) free energy of system = (1) + (5) 56.680 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.29 seconds