Wall clock time and date at job start Fri Apr 10 2020 18:28:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.42904 * 114.00152 * 2 1 4 4 C 1.52995 * 109.47613 * 179.97438 * 3 2 1 5 5 N 1.46501 * 109.47042 * 64.99688 * 4 3 2 6 6 C 1.46505 * 119.99975 * 275.00302 * 5 4 3 7 7 C 1.50703 * 109.47083 * 275.00010 * 6 5 4 8 8 H 1.08004 * 119.99652 * 359.97438 * 7 6 5 9 9 C 1.37869 * 119.99781 * 180.02562 * 7 6 5 10 10 N 1.31513 * 120.00353 * 359.97438 * 9 7 6 11 11 Si 1.86805 * 119.99738 * 179.97438 * 9 7 6 12 12 H 1.48494 * 109.47215 * 0.02562 * 11 9 7 13 13 H 1.48502 * 109.46817 * 120.00010 * 11 9 7 14 14 H 1.48503 * 109.47134 * 239.99376 * 11 9 7 15 15 S 1.65599 * 120.00185 * 95.00215 * 5 4 3 16 16 O 1.42108 * 106.39971 * 336.46391 * 15 5 4 17 17 O 1.42097 * 106.40783 * 203.54063 * 15 5 4 18 18 N 1.65603 * 107.21914 * 89.99958 * 15 5 4 19 19 C 1.46503 * 120.00002 * 64.99813 * 18 15 5 20 20 C 1.53175 * 109.53763 * 95.44702 * 19 18 15 21 21 C 1.53092 * 109.16179 * 176.85076 * 20 19 18 22 22 O 1.42910 * 109.41107 * 302.39040 * 21 20 19 23 23 C 1.42900 * 114.09727 * 61.16189 * 22 21 20 24 24 C 1.53090 * 109.41229 * 298.83586 * 23 22 21 25 25 H 1.08998 * 109.47035 * 300.00458 * 1 2 3 26 26 H 1.09003 * 109.46747 * 59.99982 * 1 2 3 27 27 H 1.08996 * 109.46601 * 180.02562 * 1 2 3 28 28 H 1.09000 * 109.47615 * 59.99579 * 3 2 1 29 29 H 1.09007 * 109.46649 * 299.99774 * 3 2 1 30 30 H 1.08996 * 109.47198 * 305.00224 * 4 3 2 31 31 H 1.08999 * 109.47676 * 184.99617 * 4 3 2 32 32 H 1.08995 * 109.47192 * 34.99867 * 6 5 4 33 33 H 1.09000 * 109.46987 * 154.99863 * 6 5 4 34 34 H 0.97005 * 120.00068 * 180.02562 * 10 9 7 35 35 H 0.97004 * 120.00032 * 245.00786 * 18 15 5 36 36 H 1.08997 * 109.61242 * 335.23082 * 19 18 15 37 37 H 1.09006 * 109.52647 * 296.75376 * 20 19 18 38 38 H 1.08998 * 109.52537 * 56.94268 * 20 19 18 39 39 H 1.08998 * 109.48147 * 182.40843 * 21 20 19 40 40 H 1.08997 * 109.48550 * 62.37144 * 21 20 19 41 41 H 1.09003 * 109.47953 * 178.86010 * 23 22 21 42 42 H 1.08995 * 109.49265 * 58.82602 * 23 22 21 43 43 H 1.09001 * 109.52724 * 297.70937 * 24 23 22 44 44 H 1.09000 * 109.52338 * 177.51272 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 6 3.5355 1.1848 0.0006 5 7 3.9767 0.5640 -1.2509 6 6 4.0015 -0.8955 -1.3757 7 6 5.3001 -1.4249 -0.8237 8 1 6.0337 -0.7423 -0.4207 9 6 5.5520 -2.7803 -0.8343 10 7 4.6589 -3.6114 -1.3255 11 14 7.1619 -3.4364 -0.1508 12 1 7.9895 -2.3049 0.3390 13 1 6.8805 -4.3658 0.9727 14 1 7.8953 -4.1603 -1.2201 15 16 4.4474 1.5120 -2.5244 16 8 3.8196 2.7734 -2.3392 17 8 4.2787 0.7244 -3.6950 18 7 6.0752 1.7723 -2.3665 19 6 7.0102 0.6494 -2.4727 20 6 7.5446 0.5616 -3.9056 21 6 8.5791 -0.5639 -3.9879 22 8 9.6278 -0.3147 -3.0497 23 6 9.1944 -0.2692 -1.6887 24 6 8.1847 0.8682 -1.5140 25 1 -0.3633 0.5139 0.8899 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3632 -1.0277 0.0005 28 1 1.6887 1.8465 0.8899 29 1 1.6886 1.8463 -0.8901 30 1 3.8508 0.5686 0.8426 31 1 3.9785 2.1766 0.0901 32 1 3.1685 -1.3221 -0.8170 33 1 3.9138 -1.1718 -2.4264 34 1 4.8360 -4.5651 -1.3326 35 1 6.4096 2.6682 -2.2036 36 1 6.4985 -0.2783 -2.2169 37 1 6.7219 0.3508 -4.5889 38 1 8.0127 1.5073 -4.1784 39 1 8.9941 -0.6032 -4.9950 40 1 8.1008 -1.5151 -3.7543 41 1 10.0528 -0.0961 -1.0395 42 1 8.7243 -1.2164 -1.4249 43 1 8.6658 1.8201 -1.7386 44 1 7.8197 0.8767 -0.4870 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000330370879.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:28:09 Heat of formation + Delta-G solvation = -197.229573 kcal Electronic energy + Delta-G solvation = -28218.502232 eV Core-core repulsion = 24296.758890 eV Total energy + Delta-G solvation = -3921.743342 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 322.144 amu Computer time = 1.14 seconds Orbital eigenvalues (eV) -40.33234 -39.05866 -38.26838 -37.01171 -36.85119 -36.48428 -34.52875 -32.02128 -31.78994 -31.03608 -28.46898 -26.98774 -25.17749 -24.61827 -24.47204 -23.31894 -21.45123 -20.34333 -18.81431 -18.60458 -18.26705 -17.68334 -17.21195 -17.08527 -16.90067 -16.50010 -16.46015 -15.83309 -15.79200 -15.54581 -15.03991 -14.89022 -14.70399 -14.43179 -13.90277 -13.51807 -13.40250 -13.33384 -13.23195 -13.11992 -13.07094 -12.96463 -12.74866 -12.57439 -12.41928 -12.35142 -12.19566 -11.97055 -11.96100 -11.82286 -11.50893 -11.14864 -10.58082 -10.56988 -10.47678 -10.34501 -9.70781 -8.11058 -6.22121 -0.26432 1.41612 1.44643 1.53675 2.01583 2.43920 2.62684 2.95935 2.99318 3.20181 3.47660 3.82895 3.89709 3.97387 4.08785 4.14179 4.21462 4.35327 4.40579 4.44579 4.49835 4.55316 4.59218 4.63747 4.79072 4.80694 4.85153 4.90414 4.91895 4.97111 5.08983 5.11874 5.20185 5.44106 5.51219 5.65846 5.81667 5.95111 6.18726 6.22793 6.28233 6.39912 6.89917 7.45038 8.97084 Molecular weight = 322.14amu Principal moments of inertia in cm(-1) A = 0.012010 B = 0.006810 C = 0.004964 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2330.863067 B = 4110.910299 C = 5638.721646 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.407 6.407 3 C 0.040 3.960 4 C 0.127 3.873 5 N -0.989 5.989 6 C 0.262 3.738 7 C -0.532 4.532 8 H 0.083 0.917 9 C 0.017 3.983 10 N -0.925 5.925 11 Si 0.932 3.068 12 H -0.236 1.236 13 H -0.288 1.288 14 H -0.286 1.286 15 S 2.795 3.205 16 O -1.008 7.008 17 O -1.016 7.016 18 N -1.106 6.106 19 C 0.124 3.876 20 C -0.168 4.168 21 C 0.061 3.939 22 O -0.390 6.390 23 C 0.053 3.947 24 C -0.145 4.145 25 H 0.061 0.939 26 H 0.040 0.960 27 H 0.084 0.916 28 H 0.087 0.913 29 H 0.040 0.960 30 H 0.088 0.912 31 H 0.110 0.890 32 H 0.033 0.967 33 H 0.008 0.992 34 H 0.262 0.738 35 H 0.421 0.579 36 H 0.104 0.896 37 H 0.066 0.934 38 H 0.088 0.912 39 H 0.117 0.883 40 H 0.038 0.962 41 H 0.120 0.880 42 H 0.036 0.964 43 H 0.093 0.907 44 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.745 10.977 2.962 11.970 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.327 6.327 3 C -0.039 4.039 4 C 0.001 3.999 5 N -0.830 5.830 6 C 0.139 3.861 7 C -0.571 4.571 8 H 0.101 0.899 9 C -0.183 4.183 10 N -0.565 5.565 11 Si 0.758 3.242 12 H -0.159 1.159 13 H -0.215 1.215 14 H -0.212 1.212 15 S 2.803 3.197 16 O -0.992 6.992 17 O -1.000 7.000 18 N -0.866 5.866 19 C 0.017 3.983 20 C -0.208 4.208 21 C -0.017 4.017 22 O -0.309 6.309 23 C -0.025 4.025 24 C -0.184 4.184 25 H 0.079 0.921 26 H 0.058 0.942 27 H 0.103 0.897 28 H 0.105 0.895 29 H 0.058 0.942 30 H 0.106 0.894 31 H 0.128 0.872 32 H 0.051 0.949 33 H 0.026 0.974 34 H 0.071 0.929 35 H 0.257 0.743 36 H 0.122 0.878 37 H 0.084 0.916 38 H 0.106 0.894 39 H 0.134 0.866 40 H 0.056 0.944 41 H 0.138 0.862 42 H 0.055 0.945 43 H 0.111 0.889 44 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges 3.350 10.822 2.145 11.530 hybrid contribution 0.074 -0.573 0.488 0.757 sum 3.424 10.249 2.633 11.122 Atomic orbital electron populations 1.22878 0.80512 1.03131 1.00624 1.88048 1.20713 1.28475 1.95449 1.23200 0.94794 0.84734 1.01133 1.21385 0.92315 0.98892 0.87288 1.57492 1.79358 1.17620 1.28493 1.18778 0.97341 0.73939 0.96086 1.21899 1.03071 0.92264 1.39902 0.89888 1.25699 0.99557 0.97417 0.95581 1.70092 1.36417 1.03375 1.46595 0.85926 0.80702 0.79519 0.78099 1.15903 1.21488 1.21203 1.01293 0.73330 0.71688 0.73365 1.93521 1.75244 1.43218 1.87200 1.93531 1.86129 1.71883 1.48419 1.55660 1.24642 1.16605 1.89739 1.21354 0.91384 0.90318 0.95265 1.22674 0.99498 1.00929 0.97656 1.22629 0.88528 0.96287 0.94224 1.87848 1.33975 1.92797 1.16297 1.22794 0.98958 0.97364 0.83346 1.22369 0.95188 1.00512 1.00353 0.92094 0.94172 0.89729 0.89547 0.94184 0.89392 0.87182 0.94938 0.97360 0.92899 0.74324 0.87819 0.91576 0.89366 0.86554 0.94382 0.86243 0.94537 0.88856 0.89554 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.68 11.01 113.37 1.25 1.92 16 2 O -0.41 -14.84 9.02 -148.98 -1.34 -16.18 16 3 C 0.04 1.23 6.28 71.98 0.45 1.68 16 4 C 0.13 4.11 5.79 86.38 0.50 4.61 16 5 N -0.99 -39.49 2.81 -519.85 -1.46 -40.96 16 6 C 0.26 13.03 5.15 85.63 0.44 13.47 16 7 C -0.53 -26.19 6.91 25.60 0.18 -26.01 16 8 H 0.08 3.72 6.95 -2.91 -0.02 3.70 16 9 C 0.02 0.90 5.46 84.65 0.46 1.36 16 10 N -0.93 -53.06 13.29 21.44 0.28 -52.78 16 11 Si 0.93 39.99 28.33 68.60 1.94 41.93 16 12 H -0.24 -8.87 6.63 99.48 0.66 -8.21 16 13 H -0.29 -12.57 7.11 99.48 0.71 -11.86 16 14 H -0.29 -12.43 7.11 99.48 0.71 -11.72 16 15 S 2.79 107.25 6.01 -56.49 -0.34 106.92 16 16 O -1.01 -38.40 17.11 -128.00 -2.19 -40.59 16 17 O -1.02 -47.61 16.07 -128.00 -2.06 -49.67 16 18 N -1.11 -33.63 5.54 -168.89 -0.94 -34.56 16 19 C 0.12 4.04 2.47 45.11 0.11 4.15 16 20 C -0.17 -5.20 5.74 30.68 0.18 -5.02 16 21 C 0.06 1.82 6.84 72.01 0.49 2.31 16 22 O -0.39 -11.66 10.77 -148.98 -1.60 -13.26 16 23 C 0.05 1.47 6.84 72.01 0.49 1.97 16 24 C -0.15 -3.83 5.67 30.68 0.17 -3.65 16 25 H 0.06 1.30 8.14 -2.39 -0.02 1.28 16 26 H 0.04 1.03 8.14 -2.39 -0.02 1.01 16 27 H 0.08 2.22 8.14 -2.39 -0.02 2.20 16 28 H 0.09 2.02 8.14 -2.39 -0.02 2.00 16 29 H 0.04 1.29 8.14 -2.38 -0.02 1.27 16 30 H 0.09 2.89 8.11 -2.39 -0.02 2.87 16 31 H 0.11 2.82 7.61 -2.39 -0.02 2.81 16 32 H 0.03 1.78 6.60 -2.39 -0.02 1.76 16 33 H 0.01 0.48 6.91 -2.39 -0.02 0.46 16 34 H 0.26 14.33 8.31 -92.70 -0.77 13.56 16 35 H 0.42 9.80 8.84 -96.74 -0.86 8.95 16 36 H 0.10 4.21 4.28 -2.39 -0.01 4.20 16 37 H 0.07 2.31 7.75 -2.38 -0.02 2.29 16 38 H 0.09 2.31 8.14 -2.39 -0.02 2.30 16 39 H 0.12 2.85 8.14 -2.39 -0.02 2.84 16 40 H 0.04 1.29 8.14 -2.39 -0.02 1.27 16 41 H 0.12 2.64 8.14 -2.39 -0.02 2.62 16 42 H 0.04 1.19 6.33 -2.39 -0.02 1.17 16 43 H 0.09 2.00 8.14 -2.39 -0.02 1.98 16 44 H 0.09 2.19 8.14 -2.39 -0.02 2.17 16 Total: -1.00 -68.59 359.21 -2.87 -71.46 By element: Atomic # 1 Polarization: 30.81 SS G_CDS: 0.10 Total: 30.91 kcal Atomic # 6 Polarization: -7.93 SS G_CDS: 4.73 Total: -3.21 kcal Atomic # 7 Polarization: -126.19 SS G_CDS: -2.11 Total: -128.30 kcal Atomic # 8 Polarization: -112.51 SS G_CDS: -7.19 Total: -119.71 kcal Atomic # 14 Polarization: 39.99 SS G_CDS: 1.94 Total: 41.93 kcal Atomic # 16 Polarization: 107.25 SS G_CDS: -0.34 Total: 106.92 kcal Total: -68.59 -2.87 -71.46 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000330370879.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -125.767 kcal (2) G-P(sol) polarization free energy of solvation -68.588 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -194.355 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.875 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.463 kcal (6) G-S(sol) free energy of system = (1) + (5) -197.230 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.15 seconds