Wall clock time and date at job start Fri Apr 10 2020 18:28:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.42907 * 113.99762 * 2 1 4 4 C 1.53005 * 109.46666 * 179.97438 * 3 2 1 5 5 N 1.46503 * 109.47061 * 65.00407 * 4 3 2 6 6 C 1.46501 * 119.99509 * 274.99756 * 5 4 3 7 7 C 1.50702 * 109.46899 * 274.99987 * 6 5 4 8 8 H 1.08002 * 120.00165 * 359.97438 * 7 6 5 9 9 C 1.37875 * 120.00044 * 180.02562 * 7 6 5 10 10 N 1.31512 * 120.00339 * 179.97438 * 9 7 6 11 11 Si 1.86805 * 119.99972 * 359.97438 * 9 7 6 12 12 H 1.48493 * 109.47275 * 89.99956 * 11 9 7 13 13 H 1.48499 * 109.47038 * 210.00335 * 11 9 7 14 14 H 1.48498 * 109.46996 * 330.00297 * 11 9 7 15 15 S 1.65601 * 120.00147 * 94.99456 * 5 4 3 16 16 O 1.42104 * 106.39757 * 156.45880 * 15 5 4 17 17 O 1.42096 * 106.40117 * 23.54269 * 15 5 4 18 18 N 1.65594 * 107.21814 * 269.99780 * 15 5 4 19 19 C 1.47420 * 125.65174 * 269.95738 * 18 15 5 20 20 C 1.54907 * 104.83524 * 204.16501 * 19 18 15 21 21 C 1.55155 * 101.58383 * 322.99460 * 20 19 18 22 22 H 1.08998 * 110.71769 * 277.13840 * 21 20 19 23 23 C 1.52994 * 110.72348 * 153.86012 * 21 20 19 24 24 O 1.42910 * 109.46698 * 71.47865 * 23 21 20 25 25 C 1.47026 * 125.64396 * 90.00381 * 18 15 5 26 26 H 1.09007 * 109.46956 * 59.99795 * 1 2 3 27 27 H 1.08998 * 109.47038 * 180.02562 * 1 2 3 28 28 H 1.09000 * 109.47008 * 300.00093 * 1 2 3 29 29 H 1.08995 * 109.47190 * 60.00232 * 3 2 1 30 30 H 1.08993 * 109.47336 * 300.00033 * 3 2 1 31 31 H 1.09000 * 109.47260 * 305.00064 * 4 3 2 32 32 H 1.09006 * 109.47016 * 185.00025 * 4 3 2 33 33 H 1.08995 * 109.47238 * 34.99868 * 6 5 4 34 34 H 1.09000 * 109.47002 * 155.00326 * 6 5 4 35 35 H 0.97002 * 120.00472 * 179.97438 * 10 9 7 36 36 H 1.08997 * 110.36858 * 323.00732 * 19 18 15 37 37 H 1.08999 * 110.36307 * 85.32946 * 19 18 15 38 38 H 1.09001 * 111.00336 * 81.06484 * 20 19 18 39 39 H 1.08994 * 111.00852 * 204.88001 * 20 19 18 40 40 H 1.09003 * 109.47469 * 191.47528 * 23 21 20 41 41 H 1.09000 * 109.47582 * 311.48227 * 23 21 20 42 42 H 0.96705 * 113.99369 * 179.97438 * 24 23 21 43 43 H 1.08998 * 109.88351 * 298.31719 * 25 18 15 44 44 H 1.08998 * 109.88379 * 59.48509 * 25 18 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5355 1.1847 0.0006 5 7 3.9767 0.5640 -1.2509 6 6 4.0014 -0.8954 -1.3758 7 6 5.3000 -1.4248 -0.8239 8 1 6.0337 -0.7423 -0.4209 9 6 5.5519 -2.7803 -0.8344 10 7 6.6853 -3.2423 -0.3533 11 14 4.2833 -3.9607 -1.5322 12 1 4.5329 -4.1548 -2.9830 13 1 4.3854 -5.2669 -0.8332 14 1 2.9230 -3.3987 -1.3348 15 16 4.4473 1.5122 -2.5245 16 8 5.3032 0.7103 -3.3268 17 8 4.8442 2.7593 -1.9710 18 7 3.0982 1.8132 -3.4363 19 6 2.6187 0.9879 -4.5598 20 6 1.7757 1.9535 -5.4297 21 6 1.0926 2.8314 -4.3481 22 1 0.2049 2.3366 -3.9540 23 6 0.7406 4.2093 -4.9122 24 8 -0.3473 4.0843 -5.8304 25 6 2.1807 2.9485 -3.2600 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3633 -1.0276 0.0005 28 1 -0.3633 0.5139 0.8900 29 1 1.6886 1.8464 0.8900 30 1 1.6886 1.8464 -0.8899 31 1 3.8508 0.5685 0.8427 32 1 3.9785 2.1766 0.0902 33 1 3.1684 -1.3221 -0.8171 34 1 3.9137 -1.1717 -2.4265 35 1 6.8624 -4.1960 -0.3604 36 1 3.4613 0.5995 -5.1318 37 1 1.9993 0.1698 -4.1921 38 1 2.4144 2.5559 -6.0756 39 1 1.0360 1.4073 -6.0149 40 1 0.4534 4.8732 -4.0968 41 1 1.6067 4.6224 -5.4292 42 1 -0.6247 4.9213 -6.2276 43 1 1.7230 2.9052 -2.2718 44 1 2.7240 3.8860 -3.3784 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000330373604.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:28:19 Heat of formation + Delta-G solvation = -158.672548 kcal Electronic energy + Delta-G solvation = -27681.606401 eV Core-core repulsion = 23761.535017 eV Total energy + Delta-G solvation = -3920.071384 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 322.144 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -38.98898 -37.92003 -36.71151 -36.61728 -35.47153 -35.22315 -32.41856 -31.56440 -29.88730 -29.44378 -27.18678 -25.88001 -25.32300 -22.65679 -22.38113 -21.54831 -20.57294 -18.57415 -17.76430 -17.56320 -17.10635 -16.66046 -16.28040 -16.00521 -15.68855 -15.26798 -14.93165 -14.75578 -14.24037 -13.98645 -13.86088 -13.59900 -13.22027 -12.93044 -12.53943 -12.42217 -12.33122 -12.28207 -12.08111 -11.79744 -11.61719 -11.39239 -11.33915 -11.31352 -11.17313 -11.04312 -10.90825 -10.82011 -10.58818 -10.31828 -10.24179 -10.14549 -9.47765 -9.45741 -8.90240 -8.49731 -8.07131 -5.99857 -3.97741 1.05445 3.32717 3.37516 3.42861 3.43328 3.79767 3.97300 4.03430 4.38618 4.47421 4.48424 4.73153 4.89125 4.98764 5.13261 5.21855 5.23512 5.25924 5.30149 5.31810 5.36632 5.43867 5.50712 5.53851 5.60687 5.68342 5.75180 5.79752 5.84742 5.90301 6.08112 6.15665 6.31656 6.39437 6.53448 6.95666 7.24221 7.28594 7.37042 7.48894 7.70134 8.57587 9.04160 9.60268 11.13839 Molecular weight = 322.14amu Principal moments of inertia in cm(-1) A = 0.014133 B = 0.004927 C = 0.004642 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1980.700506 B = 5681.345234 C = 6030.241839 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.370 6.370 3 C 0.040 3.960 4 C 0.122 3.878 5 N -0.977 5.977 6 C 0.229 3.771 7 C -0.528 4.528 8 H 0.076 0.924 9 C 0.073 3.927 10 N -0.899 5.899 11 Si 0.869 3.131 12 H -0.274 1.274 13 H -0.286 1.286 14 H -0.261 1.261 15 S 2.790 3.210 16 O -0.954 6.954 17 O -0.991 6.991 18 N -1.023 6.023 19 C 0.114 3.886 20 C -0.117 4.117 21 C -0.098 4.098 22 H 0.090 0.910 23 C 0.085 3.915 24 O -0.572 6.572 25 C 0.128 3.872 26 H 0.035 0.965 27 H 0.082 0.918 28 H 0.035 0.965 29 H 0.054 0.946 30 H 0.044 0.956 31 H 0.099 0.901 32 H 0.095 0.905 33 H 0.051 0.949 34 H 0.023 0.977 35 H 0.263 0.737 36 H 0.084 0.916 37 H 0.067 0.933 38 H 0.074 0.926 39 H 0.083 0.917 40 H 0.048 0.952 41 H 0.050 0.950 42 H 0.379 0.621 43 H 0.065 0.935 44 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.968 14.568 -6.376 23.255 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.288 6.288 3 C -0.039 4.039 4 C -0.005 4.005 5 N -0.817 5.817 6 C 0.106 3.894 7 C -0.567 4.567 8 H 0.094 0.906 9 C -0.129 4.129 10 N -0.537 5.537 11 Si 0.696 3.304 12 H -0.200 1.200 13 H -0.211 1.211 14 H -0.185 1.185 15 S 2.800 3.200 16 O -0.938 6.938 17 O -0.975 6.975 18 N -0.861 5.861 19 C -0.011 4.011 20 C -0.156 4.156 21 C -0.118 4.118 22 H 0.109 0.891 23 C 0.007 3.993 24 O -0.377 6.377 25 C 0.002 3.998 26 H 0.054 0.946 27 H 0.100 0.900 28 H 0.054 0.946 29 H 0.072 0.928 30 H 0.062 0.938 31 H 0.117 0.883 32 H 0.113 0.887 33 H 0.069 0.931 34 H 0.040 0.960 35 H 0.073 0.927 36 H 0.102 0.898 37 H 0.085 0.915 38 H 0.093 0.907 39 H 0.102 0.898 40 H 0.067 0.933 41 H 0.069 0.931 42 H 0.226 0.774 43 H 0.083 0.917 44 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -15.711 13.873 -6.294 21.883 hybrid contribution -1.224 -0.072 -0.305 1.263 sum -16.934 13.801 -6.598 22.820 Atomic orbital electron populations 1.22706 0.82323 1.02430 0.99194 1.88103 1.18449 1.27118 1.95127 1.23282 0.95730 0.85283 0.99592 1.21312 0.90601 0.99446 0.89186 1.57500 1.81484 1.18207 1.24516 1.19491 0.98853 0.74270 0.96796 1.21398 1.01733 0.93055 1.40510 0.90613 1.24827 0.95222 0.98031 0.94809 1.69899 1.23606 1.13894 1.46334 0.86943 0.82858 0.80869 0.79707 1.20007 1.21139 1.18526 1.01757 0.72613 0.72744 0.72895 1.93635 1.61590 1.69671 1.68904 1.93518 1.80681 1.44292 1.78995 1.59432 1.45124 1.35053 1.46529 1.22034 0.98681 0.93502 0.86873 1.22775 0.98571 0.97465 0.96760 1.22183 0.98300 0.95572 0.95761 0.89123 1.22156 0.89049 0.96302 0.91786 1.86479 1.52786 1.36444 1.62035 1.21568 0.90442 0.89669 0.98135 0.94649 0.89965 0.94601 0.92830 0.93803 0.88301 0.88674 0.93113 0.95954 0.92673 0.89754 0.91466 0.90723 0.89841 0.93344 0.93135 0.77425 0.91689 0.91196 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.36 11.01 101.05 1.11 1.47 16 2 O -0.37 -5.94 9.02 -35.23 -0.32 -6.26 16 3 C 0.04 0.55 6.28 37.16 0.23 0.79 16 4 C 0.12 2.08 6.13 -4.04 -0.02 2.06 16 5 N -0.98 -20.10 2.81 -115.66 -0.33 -20.43 16 6 C 0.23 5.54 4.01 -5.19 -0.02 5.52 16 7 C -0.53 -15.33 9.94 -34.44 -0.34 -15.67 16 8 H 0.08 2.40 8.06 -52.49 -0.42 1.98 16 9 C 0.07 2.17 5.47 -17.82 -0.10 2.07 16 10 N -0.90 -28.15 13.96 55.43 0.77 -27.38 16 11 Si 0.87 21.71 27.47 -169.99 -4.67 17.04 16 12 H -0.27 -6.78 7.11 56.52 0.40 -6.38 16 13 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 14 H -0.26 -6.13 6.54 56.52 0.37 -5.76 16 15 S 2.79 55.61 6.31 -107.50 -0.68 54.93 16 16 O -0.95 -22.95 16.43 -57.17 -0.94 -23.89 16 17 O -0.99 -20.29 16.27 -57.17 -0.93 -21.22 16 18 N -1.02 -15.44 3.75 -111.42 -0.42 -15.86 16 19 C 0.11 1.54 7.10 -2.53 -0.02 1.52 16 20 C -0.12 -1.22 6.48 -24.58 -0.16 -1.38 16 21 C -0.10 -0.96 3.21 -88.79 -0.29 -1.24 16 22 H 0.09 0.88 8.14 -51.93 -0.42 0.46 16 23 C 0.09 0.66 6.33 37.15 0.24 0.90 16 24 O -0.57 -4.58 13.60 -35.23 -0.48 -5.06 16 25 C 0.13 1.48 6.58 -3.06 -0.02 1.46 16 26 H 0.03 0.37 8.14 -51.93 -0.42 -0.06 16 27 H 0.08 0.92 8.14 -51.93 -0.42 0.49 16 28 H 0.04 0.35 8.14 -51.93 -0.42 -0.07 16 29 H 0.05 0.61 8.14 -51.93 -0.42 0.18 16 30 H 0.04 0.55 5.66 -51.93 -0.29 0.26 16 31 H 0.10 1.80 8.11 -51.93 -0.42 1.38 16 32 H 0.10 1.48 6.92 -51.93 -0.36 1.12 16 33 H 0.05 1.22 5.66 -51.93 -0.29 0.92 16 34 H 0.02 0.55 7.04 -51.93 -0.37 0.18 16 35 H 0.26 7.70 8.31 -40.82 -0.34 7.36 16 36 H 0.08 1.20 7.78 -51.93 -0.40 0.80 16 37 H 0.07 0.88 8.14 -51.93 -0.42 0.45 16 38 H 0.07 0.75 7.94 -51.93 -0.41 0.34 16 39 H 0.08 0.79 8.14 -51.93 -0.42 0.37 16 40 H 0.05 0.31 8.14 -51.93 -0.42 -0.11 16 41 H 0.05 0.37 8.00 -51.93 -0.42 -0.05 16 42 H 0.38 1.32 9.12 45.56 0.42 1.74 16 43 H 0.07 0.69 5.66 -51.93 -0.29 0.39 16 44 H 0.07 0.77 7.82 -51.93 -0.41 0.36 16 LS Contribution 364.12 15.07 5.49 5.49 Total: -1.00 -37.29 364.12 -8.10 -45.39 By element: Atomic # 1 Polarization: 5.97 SS G_CDS: -6.22 Total: -0.25 kcal Atomic # 6 Polarization: -3.12 SS G_CDS: 0.61 Total: -2.50 kcal Atomic # 7 Polarization: -63.70 SS G_CDS: 0.03 Total: -63.67 kcal Atomic # 8 Polarization: -53.77 SS G_CDS: -2.67 Total: -56.43 kcal Atomic # 14 Polarization: 21.71 SS G_CDS: -4.67 Total: 17.04 kcal Atomic # 16 Polarization: 55.61 SS G_CDS: -0.68 Total: 54.93 kcal Total LS contribution 5.49 Total: 5.49 kcal Total: -37.29 -8.10 -45.39 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000330373604.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -113.279 kcal (2) G-P(sol) polarization free energy of solvation -37.289 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -150.568 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.104 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.394 kcal (6) G-S(sol) free energy of system = (1) + (5) -158.673 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds