Wall clock time and date at job start Fri Apr 10 2020 18:28:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.42907 * 113.99762 * 2 1 4 4 C 1.53005 * 109.46666 * 179.97438 * 3 2 1 5 5 N 1.46503 * 109.47061 * 65.00407 * 4 3 2 6 6 C 1.46501 * 119.99509 * 274.99756 * 5 4 3 7 7 C 1.50702 * 109.46899 * 274.99987 * 6 5 4 8 8 H 1.08002 * 120.00165 * 359.97438 * 7 6 5 9 9 C 1.37875 * 120.00044 * 180.02562 * 7 6 5 10 10 N 1.31512 * 120.00339 * 179.97438 * 9 7 6 11 11 Si 1.86805 * 119.99972 * 359.97438 * 9 7 6 12 12 H 1.48493 * 109.47275 * 89.99956 * 11 9 7 13 13 H 1.48499 * 109.47038 * 210.00335 * 11 9 7 14 14 H 1.48498 * 109.46996 * 330.00297 * 11 9 7 15 15 S 1.65601 * 120.00147 * 94.99456 * 5 4 3 16 16 O 1.42104 * 106.39757 * 156.45880 * 15 5 4 17 17 O 1.42096 * 106.40117 * 23.54269 * 15 5 4 18 18 N 1.65594 * 107.21814 * 269.99780 * 15 5 4 19 19 C 1.47420 * 125.65174 * 269.95738 * 18 15 5 20 20 C 1.54907 * 104.83524 * 204.16501 * 19 18 15 21 21 C 1.55155 * 101.58383 * 322.99460 * 20 19 18 22 22 H 1.08998 * 110.71769 * 277.13840 * 21 20 19 23 23 C 1.52994 * 110.72348 * 153.86012 * 21 20 19 24 24 O 1.42910 * 109.46698 * 71.47865 * 23 21 20 25 25 C 1.47026 * 125.64396 * 90.00381 * 18 15 5 26 26 H 1.09007 * 109.46956 * 59.99795 * 1 2 3 27 27 H 1.08998 * 109.47038 * 180.02562 * 1 2 3 28 28 H 1.09000 * 109.47008 * 300.00093 * 1 2 3 29 29 H 1.08995 * 109.47190 * 60.00232 * 3 2 1 30 30 H 1.08993 * 109.47336 * 300.00033 * 3 2 1 31 31 H 1.09000 * 109.47260 * 305.00064 * 4 3 2 32 32 H 1.09006 * 109.47016 * 185.00025 * 4 3 2 33 33 H 1.08995 * 109.47238 * 34.99868 * 6 5 4 34 34 H 1.09000 * 109.47002 * 155.00326 * 6 5 4 35 35 H 0.97002 * 120.00472 * 179.97438 * 10 9 7 36 36 H 1.08997 * 110.36858 * 323.00732 * 19 18 15 37 37 H 1.08999 * 110.36307 * 85.32946 * 19 18 15 38 38 H 1.09001 * 111.00336 * 81.06484 * 20 19 18 39 39 H 1.08994 * 111.00852 * 204.88001 * 20 19 18 40 40 H 1.09003 * 109.47469 * 191.47528 * 23 21 20 41 41 H 1.09000 * 109.47582 * 311.48227 * 23 21 20 42 42 H 0.96705 * 113.99369 * 179.97438 * 24 23 21 43 43 H 1.08998 * 109.88351 * 298.31719 * 25 18 15 44 44 H 1.08998 * 109.88379 * 59.48509 * 25 18 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5355 1.1847 0.0006 5 7 3.9767 0.5640 -1.2509 6 6 4.0014 -0.8954 -1.3758 7 6 5.3000 -1.4248 -0.8239 8 1 6.0337 -0.7423 -0.4209 9 6 5.5519 -2.7803 -0.8344 10 7 6.6853 -3.2423 -0.3533 11 14 4.2833 -3.9607 -1.5322 12 1 4.5329 -4.1548 -2.9830 13 1 4.3854 -5.2669 -0.8332 14 1 2.9230 -3.3987 -1.3348 15 16 4.4473 1.5122 -2.5245 16 8 5.3032 0.7103 -3.3268 17 8 4.8442 2.7593 -1.9710 18 7 3.0982 1.8132 -3.4363 19 6 2.6187 0.9879 -4.5598 20 6 1.7757 1.9535 -5.4297 21 6 1.0926 2.8314 -4.3481 22 1 0.2049 2.3366 -3.9540 23 6 0.7406 4.2093 -4.9122 24 8 -0.3473 4.0843 -5.8304 25 6 2.1807 2.9485 -3.2600 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3633 -1.0276 0.0005 28 1 -0.3633 0.5139 0.8900 29 1 1.6886 1.8464 0.8900 30 1 1.6886 1.8464 -0.8899 31 1 3.8508 0.5685 0.8427 32 1 3.9785 2.1766 0.0902 33 1 3.1684 -1.3221 -0.8171 34 1 3.9137 -1.1717 -2.4265 35 1 6.8624 -4.1960 -0.3604 36 1 3.4613 0.5995 -5.1318 37 1 1.9993 0.1698 -4.1921 38 1 2.4144 2.5559 -6.0756 39 1 1.0360 1.4073 -6.0149 40 1 0.4534 4.8732 -4.0968 41 1 1.6067 4.6224 -5.4292 42 1 -0.6247 4.9213 -6.2276 43 1 1.7230 2.9052 -2.2718 44 1 2.7240 3.8860 -3.3784 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000330373604.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:28:18 Heat of formation + Delta-G solvation = -191.166272 kcal Electronic energy + Delta-G solvation = -27683.015435 eV Core-core repulsion = 23761.535017 eV Total energy + Delta-G solvation = -3921.480417 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 322.144 amu Computer time = 1.25 seconds Orbital eigenvalues (eV) -39.87162 -39.09353 -38.37977 -37.26799 -37.04793 -36.90287 -34.57225 -32.48725 -31.42148 -30.41165 -28.86317 -26.98187 -26.09680 -24.31107 -23.50980 -23.09452 -21.34442 -19.96305 -19.22619 -18.83533 -18.51808 -18.23086 -17.49707 -17.09271 -16.83850 -16.58360 -16.28015 -15.74679 -15.58422 -15.37569 -14.95899 -14.76934 -14.48787 -14.22267 -14.06192 -13.87285 -13.71767 -13.45710 -13.38782 -13.25044 -13.07984 -13.02124 -12.75708 -12.67103 -12.50245 -12.21705 -12.15250 -11.97707 -11.88063 -11.83217 -11.68810 -11.56677 -10.78108 -10.76747 -10.47708 -10.05298 -9.77278 -8.27759 -6.31813 -0.48810 1.36164 1.39032 1.49671 1.95130 2.36533 2.51316 2.96683 3.04538 3.08004 3.39052 3.59475 3.68522 3.90955 4.09574 4.15826 4.23704 4.35587 4.42543 4.44641 4.48477 4.58855 4.61899 4.63646 4.65772 4.70698 4.73619 4.89680 4.91842 4.96191 5.01613 5.04783 5.10461 5.15305 5.27949 5.39103 5.46922 5.52652 5.79800 6.32096 6.40190 6.69922 6.97220 7.30605 8.89844 Molecular weight = 322.14amu Principal moments of inertia in cm(-1) A = 0.014133 B = 0.004927 C = 0.004642 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1980.700506 B = 5681.345234 C = 6030.241839 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.407 6.407 3 C 0.046 3.954 4 C 0.112 3.888 5 N -0.986 5.986 6 C 0.246 3.754 7 C -0.539 4.539 8 H 0.028 0.972 9 C 0.009 3.991 10 N -0.949 5.949 11 Si 0.940 3.060 12 H -0.269 1.269 13 H -0.278 1.278 14 H -0.233 1.233 15 S 2.803 3.197 16 O -1.005 7.005 17 O -1.002 7.002 18 N -1.018 6.018 19 C 0.105 3.895 20 C -0.108 4.108 21 C -0.091 4.091 22 H 0.096 0.904 23 C 0.087 3.913 24 O -0.589 6.589 25 C 0.118 3.882 26 H 0.050 0.950 27 H 0.084 0.916 28 H 0.054 0.946 29 H 0.085 0.915 30 H 0.061 0.939 31 H 0.077 0.923 32 H 0.107 0.893 33 H 0.060 0.940 34 H 0.023 0.977 35 H 0.267 0.733 36 H 0.068 0.932 37 H 0.072 0.928 38 H 0.078 0.922 39 H 0.097 0.903 40 H 0.066 0.934 41 H 0.055 0.945 42 H 0.398 0.602 43 H 0.080 0.920 44 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.815 15.679 -7.339 27.073 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.327 6.327 3 C -0.032 4.032 4 C -0.014 4.014 5 N -0.826 5.826 6 C 0.121 3.879 7 C -0.578 4.578 8 H 0.047 0.953 9 C -0.189 4.189 10 N -0.590 5.590 11 Si 0.762 3.238 12 H -0.194 1.194 13 H -0.203 1.203 14 H -0.156 1.156 15 S 2.814 3.186 16 O -0.989 6.989 17 O -0.986 6.986 18 N -0.860 5.860 19 C -0.020 4.020 20 C -0.147 4.147 21 C -0.111 4.111 22 H 0.114 0.886 23 C 0.009 3.991 24 O -0.398 6.398 25 C -0.007 4.007 26 H 0.069 0.931 27 H 0.102 0.898 28 H 0.073 0.927 29 H 0.103 0.897 30 H 0.079 0.921 31 H 0.096 0.904 32 H 0.125 0.875 33 H 0.078 0.922 34 H 0.041 0.959 35 H 0.076 0.924 36 H 0.086 0.914 37 H 0.091 0.909 38 H 0.096 0.904 39 H 0.116 0.884 40 H 0.084 0.916 41 H 0.073 0.927 42 H 0.248 0.752 43 H 0.098 0.902 44 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -19.578 15.037 -7.240 25.726 hybrid contribution -0.001 -0.289 0.008 0.289 sum -19.579 14.748 -7.232 25.556 Atomic orbital electron populations 1.22885 0.80088 1.03196 1.00871 1.88025 1.20961 1.28204 1.95495 1.23208 0.92827 0.85228 1.01906 1.21536 0.93649 0.99177 0.87042 1.57433 1.82113 1.16723 1.26295 1.19102 0.96153 0.76441 0.96211 1.21733 1.02957 0.92845 1.40272 0.95331 1.25857 0.97648 1.00211 0.95150 1.70066 1.26149 1.14573 1.48172 0.85832 0.80925 0.78183 0.78883 1.19370 1.20326 1.15620 1.01007 0.73024 0.72023 0.72560 1.93565 1.64297 1.70933 1.70113 1.93488 1.81500 1.44269 1.79338 1.58970 1.44661 1.36388 1.45943 1.22254 0.98661 0.94422 0.86678 1.22752 0.98379 0.96993 0.96597 1.22147 0.97499 0.96789 0.94646 0.88556 1.22100 0.89400 0.95094 0.92462 1.86416 1.52739 1.38367 1.62232 1.21897 0.90490 0.88403 0.99882 0.93107 0.89786 0.92703 0.89667 0.92072 0.90419 0.87531 0.92205 0.95943 0.92429 0.91368 0.90928 0.90380 0.88446 0.91594 0.92711 0.75179 0.90219 0.90509 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.52 11.01 113.37 1.25 1.77 16 2 O -0.41 -12.12 9.02 -148.98 -1.34 -13.46 16 3 C 0.05 1.18 6.28 71.98 0.45 1.63 16 4 C 0.11 3.80 6.13 86.38 0.53 4.33 16 5 N -0.99 -40.89 2.81 -519.83 -1.46 -42.35 16 6 C 0.25 11.97 4.01 85.63 0.34 12.32 16 7 C -0.54 -32.56 9.94 25.60 0.25 -32.30 16 8 H 0.03 1.93 8.06 -2.91 -0.02 1.90 16 9 C 0.01 0.54 5.47 84.65 0.46 1.00 16 10 N -0.95 -61.70 13.96 21.45 0.30 -61.40 16 11 Si 0.94 44.90 27.47 68.60 1.88 46.78 16 12 H -0.27 -12.52 7.11 99.48 0.71 -11.81 16 13 H -0.28 -12.85 7.11 99.48 0.71 -12.14 16 14 H -0.23 -10.03 6.54 99.48 0.65 -9.38 16 15 S 2.80 112.67 6.31 -56.49 -0.36 112.31 16 16 O -1.01 -50.05 16.43 -128.00 -2.10 -52.16 16 17 O -1.00 -41.05 16.27 -128.00 -2.08 -43.14 16 18 N -1.02 -29.35 3.75 -506.43 -1.90 -31.25 16 19 C 0.10 2.67 7.10 86.86 0.62 3.28 16 20 C -0.11 -1.97 6.48 31.98 0.21 -1.76 16 21 C -0.09 -1.45 3.21 -9.61 -0.03 -1.48 16 22 H 0.10 1.47 8.14 -2.39 -0.02 1.45 16 23 C 0.09 1.03 6.33 71.98 0.46 1.49 16 24 O -0.59 -7.29 13.60 -148.98 -2.03 -9.31 16 25 C 0.12 2.40 6.58 86.73 0.57 2.97 16 26 H 0.05 0.85 8.14 -2.38 -0.02 0.83 16 27 H 0.08 1.63 8.14 -2.39 -0.02 1.61 16 28 H 0.05 0.88 8.14 -2.39 -0.02 0.86 16 29 H 0.09 1.63 8.14 -2.39 -0.02 1.61 16 30 H 0.06 1.33 5.66 -2.39 -0.01 1.32 16 31 H 0.08 2.92 8.11 -2.39 -0.02 2.90 16 32 H 0.11 3.29 6.92 -2.38 -0.02 3.27 16 33 H 0.06 2.82 5.66 -2.39 -0.01 2.81 16 34 H 0.02 1.10 7.04 -2.39 -0.02 1.08 16 35 H 0.27 16.10 8.31 -92.71 -0.77 15.33 16 36 H 0.07 1.94 7.78 -2.39 -0.02 1.92 16 37 H 0.07 1.76 8.14 -2.39 -0.02 1.75 16 38 H 0.08 1.38 7.94 -2.39 -0.02 1.36 16 39 H 0.10 1.55 8.14 -2.39 -0.02 1.53 16 40 H 0.07 0.57 8.14 -2.39 -0.02 0.55 16 41 H 0.05 0.61 8.00 -2.39 -0.02 0.59 16 42 H 0.40 1.39 9.12 -74.05 -0.68 0.72 16 43 H 0.08 1.39 5.66 -2.39 -0.01 1.38 16 44 H 0.08 1.47 7.82 -2.39 -0.02 1.46 16 Total: -1.00 -84.15 364.12 -3.71 -87.86 By element: Atomic # 1 Polarization: 12.61 SS G_CDS: 0.27 Total: 12.88 kcal Atomic # 6 Polarization: -11.88 SS G_CDS: 5.11 Total: -6.77 kcal Atomic # 7 Polarization: -131.93 SS G_CDS: -3.06 Total: -135.00 kcal Atomic # 8 Polarization: -110.51 SS G_CDS: -7.56 Total: -118.07 kcal Atomic # 14 Polarization: 44.90 SS G_CDS: 1.88 Total: 46.78 kcal Atomic # 16 Polarization: 112.67 SS G_CDS: -0.36 Total: 112.31 kcal Total: -84.15 -3.71 -87.86 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000330373604.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -103.305 kcal (2) G-P(sol) polarization free energy of solvation -84.150 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -187.455 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.711 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -87.861 kcal (6) G-S(sol) free energy of system = (1) + (5) -191.166 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.25 seconds