Wall clock time and date at job start Fri Apr 10 2020 18:28:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.42896 * 114.00553 * 2 1 4 4 C 1.52999 * 109.47595 * 180.02562 * 3 2 1 5 5 N 1.46498 * 109.47170 * 64.99400 * 4 3 2 6 6 C 1.46502 * 120.00227 * 275.00277 * 5 4 3 7 7 C 1.50703 * 109.46939 * 275.00301 * 6 5 4 8 8 H 1.07995 * 120.00178 * 0.02562 * 7 6 5 9 9 C 1.37882 * 119.99416 * 179.97438 * 7 6 5 10 10 N 1.31512 * 120.00219 * 0.02562 * 9 7 6 11 11 Si 1.86804 * 119.99584 * 180.02562 * 9 7 6 12 12 H 1.48500 * 109.47501 * 89.99930 * 11 9 7 13 13 H 1.48507 * 109.46994 * 210.00136 * 11 9 7 14 14 H 1.48505 * 109.47016 * 329.99608 * 11 9 7 15 15 S 1.65600 * 120.00085 * 95.00469 * 5 4 3 16 16 O 1.42098 * 106.39933 * 336.46326 * 15 5 4 17 17 O 1.42099 * 106.40169 * 203.53741 * 15 5 4 18 18 N 1.65602 * 107.21655 * 89.99816 * 15 5 4 19 19 C 1.47434 * 125.64803 * 269.95686 * 18 15 5 20 20 C 1.55122 * 104.93970 * 156.03465 * 19 18 15 21 21 C 1.55157 * 101.48763 * 36.77833 * 20 19 18 22 22 C 1.47018 * 125.65066 * 90.00157 * 18 15 5 23 23 H 1.09002 * 109.88354 * 300.44366 * 22 18 15 24 24 C 1.53006 * 110.00996 * 61.53085 * 22 18 15 25 25 O 1.42903 * 109.46830 * 64.34236 * 24 22 18 26 26 H 1.08992 * 109.47599 * 180.02562 * 1 2 3 27 27 H 1.08998 * 109.46959 * 300.00905 * 1 2 3 28 28 H 1.09009 * 109.46668 * 60.00123 * 1 2 3 29 29 H 1.09002 * 109.47381 * 59.99240 * 3 2 1 30 30 H 1.09002 * 109.46698 * 299.99707 * 3 2 1 31 31 H 1.09003 * 109.46403 * 304.99836 * 4 3 2 32 32 H 1.08998 * 109.47344 * 184.99663 * 4 3 2 33 33 H 1.08999 * 109.47020 * 35.00180 * 6 5 4 34 34 H 1.08996 * 109.47159 * 155.00220 * 6 5 4 35 35 H 0.97001 * 119.99551 * 180.02562 * 10 9 7 36 36 H 1.09000 * 110.36877 * 274.74871 * 19 18 15 37 37 H 1.09001 * 110.36202 * 36.96647 * 19 18 15 38 38 H 1.09002 * 110.93584 * 278.78516 * 20 19 18 39 39 H 1.09000 * 111.16113 * 154.87095 * 20 19 18 40 40 H 1.09002 * 110.72219 * 206.26353 * 21 20 19 41 41 H 1.09003 * 110.71618 * 83.16965 * 21 20 19 42 42 H 1.08992 * 109.47154 * 184.33792 * 24 22 18 43 43 H 1.08997 * 109.47144 * 304.34766 * 24 22 18 44 44 H 0.96695 * 113.99910 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5355 1.1845 -0.0006 5 7 3.9757 0.5642 -1.2527 6 6 4.0004 -0.8953 -1.3780 7 6 5.2994 -1.4249 -0.8272 8 1 6.0329 -0.7427 -0.4238 9 6 5.5507 -2.7805 -0.8375 10 7 4.6572 -3.6113 -1.3284 11 14 7.1605 -3.4371 -0.1542 12 1 7.0015 -3.7293 1.2931 13 1 7.5320 -4.6826 -0.8727 14 1 8.2279 -2.4215 -0.3398 15 16 4.4455 1.5126 -2.5263 16 8 3.8180 2.7739 -2.3402 17 8 4.2759 0.7252 -3.6969 18 7 6.0735 1.7726 -2.3695 19 6 6.6987 2.8900 -1.6386 20 6 8.1131 2.3783 -1.2594 21 6 8.4853 1.5421 -2.5122 22 6 7.1347 0.9280 -2.9368 23 1 7.0496 -0.0863 -2.5467 24 6 7.0287 0.9087 -4.4631 25 8 7.2673 2.2219 -4.9737 26 1 -0.3634 -1.0276 0.0005 27 1 -0.3633 0.5140 0.8899 28 1 -0.3633 0.5139 -0.8901 29 1 1.6887 1.8464 0.8899 30 1 1.6888 1.8462 -0.8900 31 1 3.8514 0.5681 0.8410 32 1 3.9787 2.1763 0.0889 33 1 3.1678 -1.3221 -0.8189 34 1 3.9119 -1.1712 -2.4287 35 1 4.8339 -4.5651 -1.3352 36 1 6.7753 3.7676 -2.2805 37 1 6.1247 3.1253 -0.7423 38 1 8.0746 1.7513 -0.3685 39 1 8.8077 3.2070 -1.1223 40 1 9.2006 0.7606 -2.2558 41 1 8.8822 2.1829 -3.2996 42 1 7.7695 0.2205 -4.8700 43 1 6.0304 0.5816 -4.7538 44 1 7.2155 2.2846 -5.9372 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000330387070.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:28:23 Heat of formation + Delta-G solvation = -164.253259 kcal Electronic energy + Delta-G solvation = -28250.684329 eV Core-core repulsion = 24330.370947 eV Total energy + Delta-G solvation = -3920.313382 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 322.144 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -38.59489 -37.70254 -36.64680 -35.75410 -35.28943 -35.13453 -32.54427 -30.52935 -29.86217 -29.45072 -26.71925 -25.62469 -24.76760 -22.79322 -21.83218 -21.45409 -20.66005 -18.25004 -17.54851 -17.05833 -16.68883 -16.26735 -15.89529 -15.82055 -15.39733 -15.02183 -14.55994 -14.40651 -14.33643 -13.65145 -13.57887 -13.18504 -12.90766 -12.59495 -12.44548 -12.22085 -12.02562 -11.97041 -11.86967 -11.61213 -11.45063 -11.19814 -11.13508 -11.06856 -10.95235 -10.86075 -10.62152 -10.49503 -10.39913 -10.32827 -10.03188 -9.70230 -9.50077 -9.25825 -8.53899 -8.41035 -7.95756 -6.03892 -4.09439 1.28923 3.26574 3.33879 3.34590 3.55837 4.15436 4.20250 4.40240 4.51223 4.75666 4.89879 5.16394 5.25600 5.30200 5.40226 5.45829 5.47825 5.57829 5.63906 5.68003 5.72082 5.76379 5.80374 5.87298 5.95179 5.96730 6.07103 6.12543 6.27596 6.32066 6.37054 6.50545 6.59228 6.75227 6.89451 7.54070 7.57495 7.60053 7.81198 7.87709 7.95912 8.26167 8.95786 9.54812 11.03931 Molecular weight = 322.14amu Principal moments of inertia in cm(-1) A = 0.009563 B = 0.007744 C = 0.005186 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2927.338569 B = 3614.658509 C = 5397.683410 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.369 6.369 3 C 0.044 3.956 4 C 0.136 3.864 5 N -0.985 5.985 6 C 0.245 3.755 7 C -0.536 4.536 8 H 0.061 0.939 9 C 0.065 3.935 10 N -0.887 5.887 11 Si 0.889 3.111 12 H -0.281 1.281 13 H -0.287 1.287 14 H -0.273 1.273 15 S 2.798 3.202 16 O -1.000 7.000 17 O -0.975 6.975 18 N -1.004 6.004 19 C 0.132 3.868 20 C -0.128 4.128 21 C -0.120 4.120 22 C 0.155 3.845 23 H 0.106 0.894 24 C 0.041 3.959 25 O -0.570 6.570 26 H 0.083 0.917 27 H 0.034 0.966 28 H 0.035 0.965 29 H 0.050 0.950 30 H 0.048 0.952 31 H 0.090 0.910 32 H 0.077 0.923 33 H 0.056 0.944 34 H 0.045 0.955 35 H 0.262 0.738 36 H 0.063 0.937 37 H 0.064 0.936 38 H 0.075 0.925 39 H 0.074 0.926 40 H 0.072 0.928 41 H 0.081 0.919 42 H 0.051 0.949 43 H 0.082 0.918 44 H 0.371 0.629 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.518 10.774 -0.018 11.065 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.287 6.287 3 C -0.035 4.035 4 C 0.009 3.991 5 N -0.826 5.826 6 C 0.124 3.876 7 C -0.576 4.576 8 H 0.079 0.921 9 C -0.138 4.138 10 N -0.526 5.526 11 Si 0.717 3.283 12 H -0.207 1.207 13 H -0.213 1.213 14 H -0.198 1.198 15 S 2.809 3.191 16 O -0.984 6.984 17 O -0.960 6.960 18 N -0.842 5.842 19 C 0.006 3.994 20 C -0.167 4.167 21 C -0.159 4.159 22 C 0.048 3.952 23 H 0.124 0.876 24 C -0.038 4.038 25 O -0.374 6.374 26 H 0.102 0.898 27 H 0.052 0.948 28 H 0.054 0.946 29 H 0.068 0.932 30 H 0.066 0.934 31 H 0.108 0.892 32 H 0.095 0.905 33 H 0.074 0.926 34 H 0.063 0.937 35 H 0.072 0.928 36 H 0.081 0.919 37 H 0.083 0.917 38 H 0.093 0.907 39 H 0.093 0.907 40 H 0.091 0.909 41 H 0.100 0.900 42 H 0.069 0.931 43 H 0.100 0.900 44 H 0.217 0.783 Dipole moment (debyes) X Y Z Total from point charges 1.992 10.840 -0.125 11.022 hybrid contribution 0.800 -0.650 0.163 1.044 sum 2.792 10.190 0.039 10.565 Atomic orbital electron populations 1.22704 0.82376 1.02446 0.99107 1.88102 1.18437 1.27039 1.95149 1.23100 0.95421 0.85164 0.99835 1.21062 0.91310 0.97611 0.89143 1.57753 1.78246 1.19509 1.27090 1.19275 0.98071 0.71487 0.98805 1.21585 1.02878 0.92089 1.41036 0.92080 1.24931 0.96673 0.96899 0.95319 1.69948 1.34361 1.03108 1.45140 0.86658 0.83994 0.78560 0.79108 1.20742 1.21254 1.19796 1.01358 0.71670 0.72291 0.73799 1.93516 1.74260 1.43381 1.87254 1.93502 1.84952 1.71017 1.46509 1.58973 1.23142 1.35499 1.66584 1.21816 0.93524 0.89162 0.94939 1.22774 0.95891 0.99674 0.98398 1.22573 0.95970 0.99580 0.97805 1.21466 0.87059 0.96020 0.90643 0.87644 1.23057 1.02155 0.83793 0.94789 1.86451 1.94813 1.30589 1.25597 0.89830 0.94790 0.94624 0.93151 0.93351 0.89180 0.90493 0.92571 0.93698 0.92769 0.91867 0.91711 0.90654 0.90736 0.90897 0.90022 0.93096 0.89960 0.78311 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.44 11.01 101.05 1.11 1.55 16 2 O -0.37 -6.94 9.02 -35.23 -0.32 -7.26 16 3 C 0.04 0.73 6.28 37.16 0.23 0.97 16 4 C 0.14 2.43 5.79 -4.04 -0.02 2.41 16 5 N -0.99 -20.85 2.81 -115.66 -0.33 -21.18 16 6 C 0.25 6.18 5.27 -5.19 -0.03 6.16 16 7 C -0.54 -13.90 8.92 -34.44 -0.31 -14.21 16 8 H 0.06 1.52 7.81 -52.49 -0.41 1.11 16 9 C 0.06 1.74 5.46 -17.82 -0.10 1.64 16 10 N -0.89 -25.38 13.29 55.43 0.74 -24.64 16 11 Si 0.89 20.48 29.54 -169.99 -5.02 15.46 16 12 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 13 H -0.29 -6.64 7.11 56.52 0.40 -6.23 16 14 H -0.27 -6.04 7.11 56.52 0.40 -5.64 16 15 S 2.80 58.14 6.27 -107.50 -0.67 57.47 16 16 O -1.00 -21.21 16.69 -57.17 -0.95 -22.16 16 17 O -0.98 -22.84 13.78 -57.17 -0.79 -23.62 16 18 N -1.00 -18.05 3.41 -104.29 -0.36 -18.40 16 19 C 0.13 1.95 6.99 -2.41 -0.02 1.94 16 20 C -0.13 -1.65 7.11 -24.47 -0.17 -1.82 16 21 C -0.12 -1.67 6.35 -24.90 -0.16 -1.83 16 22 C 0.15 2.66 3.47 -66.95 -0.23 2.43 16 23 H 0.11 2.04 7.68 -51.93 -0.40 1.64 16 24 C 0.04 0.67 6.69 37.16 0.25 0.92 16 25 O -0.57 -8.33 12.44 -35.23 -0.44 -8.77 16 26 H 0.08 1.12 8.14 -51.93 -0.42 0.70 16 27 H 0.03 0.41 8.14 -51.93 -0.42 -0.02 16 28 H 0.04 0.48 8.14 -51.92 -0.42 0.05 16 29 H 0.05 0.69 8.14 -51.93 -0.42 0.26 16 30 H 0.05 0.84 8.14 -51.93 -0.42 0.41 16 31 H 0.09 1.63 8.11 -51.93 -0.42 1.21 16 32 H 0.08 1.18 7.61 -51.93 -0.40 0.78 16 33 H 0.06 1.52 6.60 -51.93 -0.34 1.18 16 34 H 0.05 1.25 6.91 -51.93 -0.36 0.89 16 35 H 0.26 7.14 8.31 -40.82 -0.34 6.80 16 36 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 37 H 0.06 0.89 8.14 -51.93 -0.42 0.46 16 38 H 0.07 0.99 8.14 -51.93 -0.42 0.57 16 39 H 0.07 0.78 8.14 -51.93 -0.42 0.35 16 40 H 0.07 0.94 8.14 -51.93 -0.42 0.52 16 41 H 0.08 1.09 6.98 -51.93 -0.36 0.73 16 42 H 0.05 0.72 8.14 -51.93 -0.42 0.29 16 43 H 0.08 1.55 5.56 -51.93 -0.29 1.26 16 44 H 0.37 3.78 9.12 45.56 0.42 4.19 16 LS Contribution 366.16 15.07 5.52 5.52 Total: -1.00 -33.11 366.16 -8.41 -41.52 By element: Atomic # 1 Polarization: 12.28 SS G_CDS: -6.35 Total: 5.94 kcal Atomic # 6 Polarization: -0.42 SS G_CDS: 0.56 Total: 0.14 kcal Atomic # 7 Polarization: -64.28 SS G_CDS: 0.06 Total: -64.22 kcal Atomic # 8 Polarization: -59.31 SS G_CDS: -2.50 Total: -61.81 kcal Atomic # 14 Polarization: 20.48 SS G_CDS: -5.02 Total: 15.46 kcal Atomic # 16 Polarization: 58.14 SS G_CDS: -0.67 Total: 57.47 kcal Total LS contribution 5.52 Total: 5.52 kcal Total: -33.11 -8.41 -41.52 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000330387070.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -122.736 kcal (2) G-P(sol) polarization free energy of solvation -33.107 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -155.844 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.409 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.517 kcal (6) G-S(sol) free energy of system = (1) + (5) -164.253 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds