Wall clock time and date at job start Fri Apr 10 2020 18:28:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.42896 * 114.00553 * 2 1 4 4 C 1.52999 * 109.47595 * 180.02562 * 3 2 1 5 5 N 1.46498 * 109.47170 * 64.99400 * 4 3 2 6 6 C 1.46502 * 120.00227 * 275.00277 * 5 4 3 7 7 C 1.50703 * 109.46939 * 275.00301 * 6 5 4 8 8 H 1.07995 * 120.00178 * 0.02562 * 7 6 5 9 9 C 1.37882 * 119.99416 * 179.97438 * 7 6 5 10 10 N 1.31512 * 120.00219 * 0.02562 * 9 7 6 11 11 Si 1.86804 * 119.99584 * 180.02562 * 9 7 6 12 12 H 1.48500 * 109.47501 * 89.99930 * 11 9 7 13 13 H 1.48507 * 109.46994 * 210.00136 * 11 9 7 14 14 H 1.48505 * 109.47016 * 329.99608 * 11 9 7 15 15 S 1.65600 * 120.00085 * 95.00469 * 5 4 3 16 16 O 1.42098 * 106.39933 * 336.46326 * 15 5 4 17 17 O 1.42099 * 106.40169 * 203.53741 * 15 5 4 18 18 N 1.65602 * 107.21655 * 89.99816 * 15 5 4 19 19 C 1.47434 * 125.64803 * 269.95686 * 18 15 5 20 20 C 1.55122 * 104.93970 * 156.03465 * 19 18 15 21 21 C 1.55157 * 101.48763 * 36.77833 * 20 19 18 22 22 C 1.47018 * 125.65066 * 90.00157 * 18 15 5 23 23 H 1.09002 * 109.88354 * 300.44366 * 22 18 15 24 24 C 1.53006 * 110.00996 * 61.53085 * 22 18 15 25 25 O 1.42903 * 109.46830 * 64.34236 * 24 22 18 26 26 H 1.08992 * 109.47599 * 180.02562 * 1 2 3 27 27 H 1.08998 * 109.46959 * 300.00905 * 1 2 3 28 28 H 1.09009 * 109.46668 * 60.00123 * 1 2 3 29 29 H 1.09002 * 109.47381 * 59.99240 * 3 2 1 30 30 H 1.09002 * 109.46698 * 299.99707 * 3 2 1 31 31 H 1.09003 * 109.46403 * 304.99836 * 4 3 2 32 32 H 1.08998 * 109.47344 * 184.99663 * 4 3 2 33 33 H 1.08999 * 109.47020 * 35.00180 * 6 5 4 34 34 H 1.08996 * 109.47159 * 155.00220 * 6 5 4 35 35 H 0.97001 * 119.99551 * 180.02562 * 10 9 7 36 36 H 1.09000 * 110.36877 * 274.74871 * 19 18 15 37 37 H 1.09001 * 110.36202 * 36.96647 * 19 18 15 38 38 H 1.09002 * 110.93584 * 278.78516 * 20 19 18 39 39 H 1.09000 * 111.16113 * 154.87095 * 20 19 18 40 40 H 1.09002 * 110.72219 * 206.26353 * 21 20 19 41 41 H 1.09003 * 110.71618 * 83.16965 * 21 20 19 42 42 H 1.08992 * 109.47154 * 184.33792 * 24 22 18 43 43 H 1.08997 * 109.47144 * 304.34766 * 24 22 18 44 44 H 0.96695 * 113.99910 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5355 1.1845 -0.0006 5 7 3.9757 0.5642 -1.2527 6 6 4.0004 -0.8953 -1.3780 7 6 5.2994 -1.4249 -0.8272 8 1 6.0329 -0.7427 -0.4238 9 6 5.5507 -2.7805 -0.8375 10 7 4.6572 -3.6113 -1.3284 11 14 7.1605 -3.4371 -0.1542 12 1 7.0015 -3.7293 1.2931 13 1 7.5320 -4.6826 -0.8727 14 1 8.2279 -2.4215 -0.3398 15 16 4.4455 1.5126 -2.5263 16 8 3.8180 2.7739 -2.3402 17 8 4.2759 0.7252 -3.6969 18 7 6.0735 1.7726 -2.3695 19 6 6.6987 2.8900 -1.6386 20 6 8.1131 2.3783 -1.2594 21 6 8.4853 1.5421 -2.5122 22 6 7.1347 0.9280 -2.9368 23 1 7.0496 -0.0863 -2.5467 24 6 7.0287 0.9087 -4.4631 25 8 7.2673 2.2219 -4.9737 26 1 -0.3634 -1.0276 0.0005 27 1 -0.3633 0.5140 0.8899 28 1 -0.3633 0.5139 -0.8901 29 1 1.6887 1.8464 0.8899 30 1 1.6888 1.8462 -0.8900 31 1 3.8514 0.5681 0.8410 32 1 3.9787 2.1763 0.0889 33 1 3.1678 -1.3221 -0.8189 34 1 3.9119 -1.1712 -2.4287 35 1 4.8339 -4.5651 -1.3352 36 1 6.7753 3.7676 -2.2805 37 1 6.1247 3.1253 -0.7423 38 1 8.0746 1.7513 -0.3685 39 1 8.8077 3.2070 -1.1223 40 1 9.2006 0.7606 -2.2558 41 1 8.8822 2.1829 -3.2996 42 1 7.7695 0.2205 -4.8700 43 1 6.0304 0.5816 -4.7538 44 1 7.2155 2.2846 -5.9372 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000330387070.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:28:21 Heat of formation + Delta-G solvation = -191.236349 kcal Electronic energy + Delta-G solvation = -28251.854404 eV Core-core repulsion = 24330.370947 eV Total energy + Delta-G solvation = -3921.483456 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 322.144 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -39.83063 -39.09079 -38.33497 -37.00662 -36.95863 -36.79004 -34.52291 -31.76048 -31.12008 -31.01053 -28.45565 -27.00689 -25.98282 -24.60099 -23.33843 -22.75437 -21.89154 -19.78069 -18.97252 -18.63754 -18.37165 -17.91927 -17.38253 -17.16146 -16.77385 -16.54022 -16.18690 -15.83376 -15.61697 -15.14829 -14.93498 -14.55329 -14.41388 -14.10966 -13.88971 -13.64508 -13.52413 -13.40139 -13.25443 -13.18013 -13.07400 -12.92809 -12.72667 -12.58190 -12.50779 -12.25531 -12.03898 -11.97830 -11.85648 -11.66410 -11.61975 -11.43805 -10.75888 -10.58712 -10.48207 -9.93757 -9.67382 -8.09431 -6.22527 -0.33152 1.45616 1.45916 1.56220 2.01216 2.46421 2.56520 2.95829 3.22040 3.23078 3.44393 3.67622 3.94583 4.02036 4.11242 4.16980 4.27912 4.36909 4.43691 4.45432 4.53310 4.56601 4.58002 4.69269 4.75678 4.82428 4.87582 5.01452 5.03433 5.07285 5.13969 5.18096 5.31777 5.45914 5.49467 5.56616 5.70437 5.81863 6.00700 6.19992 6.37099 6.89467 6.89939 7.46207 8.98773 Molecular weight = 322.14amu Principal moments of inertia in cm(-1) A = 0.009563 B = 0.007744 C = 0.005186 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2927.338569 B = 3614.658509 C = 5397.683410 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 O -0.408 6.408 3 C 0.041 3.959 4 C 0.126 3.874 5 N -0.991 5.991 6 C 0.267 3.733 7 C -0.534 4.534 8 H 0.072 0.928 9 C 0.010 3.990 10 N -0.929 5.929 11 Si 0.956 3.044 12 H -0.278 1.278 13 H -0.289 1.289 14 H -0.253 1.253 15 S 2.807 3.193 16 O -1.005 7.005 17 O -1.010 7.010 18 N -1.005 6.005 19 C 0.119 3.881 20 C -0.119 4.119 21 C -0.112 4.112 22 C 0.143 3.857 23 H 0.077 0.923 24 C 0.045 3.955 25 O -0.574 6.574 26 H 0.085 0.915 27 H 0.062 0.938 28 H 0.040 0.960 29 H 0.089 0.911 30 H 0.039 0.961 31 H 0.086 0.914 32 H 0.106 0.894 33 H 0.031 0.969 34 H 0.007 0.993 35 H 0.262 0.738 36 H 0.069 0.931 37 H 0.076 0.924 38 H 0.073 0.927 39 H 0.107 0.893 40 H 0.085 0.915 41 H 0.091 0.909 42 H 0.072 0.928 43 H 0.049 0.951 44 H 0.391 0.609 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.647 12.524 1.307 13.422 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 O -0.327 6.327 3 C -0.037 4.037 4 C 0.000 4.000 5 N -0.830 5.830 6 C 0.144 3.856 7 C -0.573 4.573 8 H 0.090 0.910 9 C -0.189 4.189 10 N -0.569 5.569 11 Si 0.781 3.219 12 H -0.204 1.204 13 H -0.215 1.215 14 H -0.177 1.177 15 S 2.818 3.182 16 O -0.990 6.990 17 O -0.995 6.995 18 N -0.845 5.845 19 C -0.006 4.006 20 C -0.158 4.158 21 C -0.151 4.151 22 C 0.037 3.963 23 H 0.095 0.905 24 C -0.034 4.034 25 O -0.381 6.381 26 H 0.104 0.896 27 H 0.080 0.920 28 H 0.058 0.942 29 H 0.107 0.893 30 H 0.057 0.943 31 H 0.105 0.895 32 H 0.124 0.876 33 H 0.049 0.951 34 H 0.025 0.975 35 H 0.071 0.929 36 H 0.088 0.912 37 H 0.094 0.906 38 H 0.092 0.908 39 H 0.126 0.874 40 H 0.103 0.897 41 H 0.109 0.891 42 H 0.091 0.909 43 H 0.067 0.933 44 H 0.239 0.761 Dipole moment (debyes) X Y Z Total from point charges 4.106 12.634 1.202 13.339 hybrid contribution 0.081 -1.113 -0.297 1.155 sum 4.188 11.521 0.905 12.292 Atomic orbital electron populations 1.22894 0.80388 1.03219 1.00686 1.88048 1.20847 1.28395 1.95454 1.23175 0.94575 0.84786 1.01153 1.21372 0.92531 0.98611 0.87437 1.57645 1.79108 1.17750 1.28539 1.18706 0.97181 0.73851 0.95879 1.21825 1.03000 0.92354 1.40136 0.91009 1.25804 1.00134 0.97285 0.95651 1.70101 1.36649 1.03345 1.46842 0.85594 0.80166 0.78031 0.78154 1.20363 1.21530 1.17670 1.00883 0.72404 0.71794 0.73144 1.93496 1.75052 1.43175 1.87240 1.93466 1.85894 1.71821 1.48270 1.58762 1.22202 1.36533 1.67007 1.22156 0.94846 0.88346 0.95237 1.22788 0.94986 1.00439 0.97558 1.22567 0.93905 1.00054 0.98582 1.21587 0.88698 0.94896 0.91147 0.90498 1.22862 1.00973 0.84947 0.94660 1.86388 1.94591 1.29507 1.27596 0.89616 0.91971 0.94163 0.89342 0.94294 0.89536 0.87635 0.95095 0.97530 0.92867 0.91221 0.90567 0.90840 0.87432 0.89653 0.89072 0.90948 0.93329 0.76059 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.69 11.01 113.37 1.25 1.94 16 2 O -0.41 -15.53 9.02 -148.98 -1.34 -16.87 16 3 C 0.04 1.36 6.28 71.98 0.45 1.81 16 4 C 0.13 4.44 5.79 86.38 0.50 4.94 16 5 N -0.99 -42.66 2.81 -519.85 -1.46 -44.12 16 6 C 0.27 14.05 5.27 85.63 0.45 14.50 16 7 C -0.53 -28.08 8.92 25.60 0.23 -27.85 16 8 H 0.07 3.54 7.81 -2.91 -0.02 3.52 16 9 C 0.01 0.56 5.46 84.66 0.46 1.02 16 10 N -0.93 -54.82 13.29 21.45 0.28 -54.54 16 11 Si 0.96 41.84 29.54 68.60 2.03 43.86 16 12 H -0.28 -11.96 7.11 99.48 0.71 -11.25 16 13 H -0.29 -12.72 7.11 99.48 0.71 -12.01 16 14 H -0.25 -10.17 7.11 99.48 0.71 -9.46 16 15 S 2.81 118.13 6.27 -56.49 -0.35 117.77 16 16 O -1.01 -42.21 16.69 -128.00 -2.14 -44.35 16 17 O -1.01 -49.48 13.78 -128.00 -1.76 -51.25 16 18 N -1.00 -35.26 3.41 -483.86 -1.65 -36.91 16 19 C 0.12 3.22 6.99 86.93 0.61 3.83 16 20 C -0.12 -2.62 7.11 32.06 0.23 -2.39 16 21 C -0.11 -2.79 6.35 31.78 0.20 -2.59 16 22 C 0.14 4.80 3.47 45.34 0.16 4.96 16 23 H 0.08 2.99 7.68 -2.39 -0.02 2.98 16 24 C 0.04 1.44 6.69 71.98 0.48 1.92 16 25 O -0.57 -15.85 12.44 -148.98 -1.85 -17.71 16 26 H 0.09 2.32 8.14 -2.39 -0.02 2.30 16 27 H 0.06 1.38 8.14 -2.39 -0.02 1.36 16 28 H 0.04 1.07 8.14 -2.38 -0.02 1.05 16 29 H 0.09 2.20 8.14 -2.39 -0.02 2.18 16 30 H 0.04 1.33 8.14 -2.39 -0.02 1.32 16 31 H 0.09 3.08 8.11 -2.39 -0.02 3.06 16 32 H 0.11 3.03 7.61 -2.39 -0.02 3.01 16 33 H 0.03 1.77 6.60 -2.39 -0.02 1.75 16 34 H 0.01 0.40 6.91 -2.39 -0.02 0.38 16 35 H 0.26 14.67 8.31 -92.71 -0.77 13.90 16 36 H 0.07 1.81 8.14 -2.39 -0.02 1.79 16 37 H 0.08 1.87 8.14 -2.39 -0.02 1.85 16 38 H 0.07 1.67 8.14 -2.39 -0.02 1.65 16 39 H 0.11 1.71 8.14 -2.39 -0.02 1.69 16 40 H 0.08 1.92 8.14 -2.39 -0.02 1.90 16 41 H 0.09 2.12 6.98 -2.39 -0.02 2.10 16 42 H 0.07 1.97 8.14 -2.39 -0.02 1.95 16 43 H 0.05 1.90 5.56 -2.39 -0.01 1.89 16 44 H 0.39 7.33 9.12 -74.06 -0.68 6.65 16 Total: -1.00 -73.54 366.16 -2.91 -76.46 By element: Atomic # 1 Polarization: 25.25 SS G_CDS: 0.32 Total: 25.57 kcal Atomic # 6 Polarization: -2.94 SS G_CDS: 5.02 Total: 2.08 kcal Atomic # 7 Polarization: -132.74 SS G_CDS: -2.83 Total: -135.57 kcal Atomic # 8 Polarization: -123.08 SS G_CDS: -7.10 Total: -130.18 kcal Atomic # 14 Polarization: 41.84 SS G_CDS: 2.03 Total: 43.86 kcal Atomic # 16 Polarization: 118.13 SS G_CDS: -0.35 Total: 117.77 kcal Total: -73.54 -2.91 -76.46 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000330387070.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -114.780 kcal (2) G-P(sol) polarization free energy of solvation -73.542 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -188.321 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.915 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.457 kcal (6) G-S(sol) free energy of system = (1) + (5) -191.236 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds