Wall clock time and date at job start Fri Apr 10 2020 18:28:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.42898 * 113.99979 * 2 1 4 4 C 1.53000 * 109.47149 * 179.97438 * 3 2 1 5 5 N 1.46501 * 109.47125 * 64.99761 * 4 3 2 6 6 C 1.46497 * 120.00087 * 275.00213 * 5 4 3 7 7 C 1.50698 * 109.47172 * 84.99868 * 6 5 4 8 8 H 1.07994 * 120.00278 * 0.02562 * 7 6 5 9 9 C 1.37886 * 119.99827 * 179.97438 * 7 6 5 10 10 N 1.31507 * 120.00078 * 0.02562 * 9 7 6 11 11 Si 1.86802 * 119.99700 * 179.97438 * 9 7 6 12 12 H 1.48500 * 109.47217 * 0.02562 * 11 9 7 13 13 H 1.48506 * 109.46635 * 120.00213 * 11 9 7 14 14 H 1.48495 * 109.47147 * 239.99785 * 11 9 7 15 15 S 1.65603 * 119.99992 * 95.00086 * 5 4 3 16 16 O 1.42099 * 106.40055 * 203.54068 * 15 5 4 17 17 O 1.42099 * 106.39816 * 336.46077 * 15 5 4 18 18 N 1.65595 * 107.21645 * 89.99898 * 15 5 4 19 19 C 1.46501 * 119.99988 * 65.00205 * 18 15 5 20 20 H 1.09002 * 109.52535 * 24.99862 * 19 18 15 21 21 C 1.53181 * 109.52374 * 145.12475 * 19 18 15 22 22 C 1.53183 * 109.03478 * 176.82273 * 21 19 18 23 23 C 1.53087 * 109.21483 * 303.11706 * 22 21 19 24 24 O 1.42899 * 109.41730 * 57.56869 * 23 22 21 25 25 C 1.42903 * 114.09965 * 298.84601 * 24 23 22 26 26 H 1.09002 * 109.47382 * 300.00227 * 1 2 3 27 27 H 1.09001 * 109.46938 * 180.02562 * 1 2 3 28 28 H 1.09004 * 109.46926 * 60.00334 * 1 2 3 29 29 H 1.09000 * 109.47170 * 299.99544 * 3 2 1 30 30 H 1.09004 * 109.47235 * 59.99983 * 3 2 1 31 31 H 1.08998 * 109.47145 * 185.00090 * 4 3 2 32 32 H 1.08996 * 109.47046 * 304.99741 * 4 3 2 33 33 H 1.09003 * 109.47434 * 204.99813 * 6 5 4 34 34 H 1.09007 * 109.46951 * 324.99748 * 6 5 4 35 35 H 0.97003 * 120.00061 * 179.97438 * 10 9 7 36 36 H 0.97003 * 120.00237 * 245.00277 * 18 15 5 37 37 H 1.09003 * 109.54157 * 296.75690 * 21 19 18 38 38 H 1.09001 * 109.54509 * 57.01292 * 21 19 18 39 39 H 1.09001 * 109.52777 * 183.17059 * 22 21 19 40 40 H 1.09004 * 109.51887 * 63.04852 * 22 21 19 41 41 H 1.09004 * 109.47819 * 297.58792 * 23 22 21 42 42 H 1.08994 * 109.49149 * 177.56376 * 23 22 21 43 43 H 1.08999 * 109.47918 * 301.16955 * 25 24 23 44 44 H 1.09003 * 109.48936 * 181.14234 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5355 1.1846 0.0006 5 7 3.9767 0.5639 -1.2508 6 6 4.0015 -0.8955 -1.3757 7 6 2.6363 -1.3883 -1.7811 8 1 1.8308 -0.6847 -1.9312 9 6 2.4158 -2.7374 -1.9614 10 7 3.3967 -3.5941 -1.7792 11 14 0.7233 -3.3482 -2.4633 12 1 -0.1989 -2.1926 -2.6025 13 1 0.8199 -4.0631 -3.7613 14 1 0.2036 -4.2746 -1.4255 15 16 4.4474 1.5120 -2.5244 16 8 4.2787 0.7242 -3.6949 17 8 3.8196 2.7732 -2.3392 18 7 6.0752 1.7722 -2.3664 19 6 7.0101 0.6493 -2.4727 20 1 6.5599 -0.1446 -3.0687 21 6 8.3036 1.1220 -3.1435 22 6 9.3021 -0.0392 -3.1772 23 6 9.5365 -0.5437 -1.7509 24 8 8.2894 -0.9387 -1.1758 25 6 7.3331 0.1183 -1.0737 26 1 -0.3634 0.5139 0.8900 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3633 0.5138 -0.8901 29 1 1.6887 1.8463 -0.8900 30 1 1.6886 1.8464 0.8900 31 1 3.9785 2.1765 0.0902 32 1 3.8508 0.5686 0.8427 33 1 4.7311 -1.1831 -2.1327 34 1 4.2778 -1.3374 -0.4183 35 1 3.2415 -4.5433 -1.9057 36 1 6.4096 2.6680 -2.2035 37 1 8.0884 1.4488 -4.1608 38 1 8.7276 1.9499 -2.5753 39 1 10.2456 0.3037 -3.6020 40 1 8.9001 -0.8476 -3.7880 41 1 9.9772 0.2529 -1.1514 42 1 10.2130 -1.3980 -1.7739 43 1 7.7450 0.9235 -0.4653 44 1 6.4222 -0.2590 -0.6089 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000330406979.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:28:41 Heat of formation + Delta-G solvation = -160.947324 kcal Electronic energy + Delta-G solvation = -28046.684377 eV Core-core repulsion = 24126.514352 eV Total energy + Delta-G solvation = -3920.170026 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 322.144 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -39.36674 -37.48477 -36.62948 -35.32563 -35.14754 -35.11192 -32.59880 -32.35177 -29.36765 -29.06560 -26.55991 -25.36838 -25.01968 -23.11465 -22.61175 -21.75921 -20.53033 -18.92633 -17.27077 -17.05901 -16.55036 -16.31935 -15.97433 -15.66463 -15.42470 -15.07944 -14.75817 -14.67576 -14.32665 -14.15408 -13.61233 -13.44326 -13.18105 -12.67042 -12.49655 -12.39231 -12.05976 -11.99040 -11.69177 -11.67625 -11.43320 -11.34026 -11.18737 -11.08646 -10.88948 -10.77010 -10.68470 -10.52092 -10.48218 -10.26660 -9.96584 -9.84249 -9.51073 -9.02140 -8.67285 -8.21164 -8.02081 -5.82660 -3.77537 1.18242 3.41304 3.43161 3.49207 3.52823 3.96465 4.15987 4.50820 4.62813 4.67483 4.79382 4.82079 4.96183 5.06932 5.21409 5.34169 5.38825 5.49275 5.55473 5.60841 5.65386 5.70107 5.76155 5.81077 5.87033 5.90625 5.92345 5.98624 6.01663 6.15167 6.28260 6.31317 6.38418 6.51796 7.09316 7.28917 7.35744 7.52979 7.70542 7.97515 8.17759 8.45363 9.22608 9.81250 11.27518 Molecular weight = 322.14amu Principal moments of inertia in cm(-1) A = 0.013709 B = 0.005563 C = 0.004666 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2041.915699 B = 5032.396146 C = 5999.779323 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.332 6.332 3 C 0.041 3.959 4 C 0.139 3.861 5 N -0.989 5.989 6 C 0.259 3.741 7 C -0.483 4.483 8 H 0.071 0.929 9 C 0.055 3.945 10 N -0.903 5.903 11 Si 0.888 3.112 12 H -0.274 1.274 13 H -0.288 1.288 14 H -0.288 1.288 15 S 2.776 3.224 16 O -0.960 6.960 17 O -0.999 6.999 18 N -1.128 6.128 19 C 0.117 3.883 20 H 0.106 0.894 21 C -0.124 4.124 22 C -0.156 4.156 23 C 0.056 3.944 24 O -0.370 6.370 25 C 0.044 3.956 26 H 0.025 0.975 27 H 0.078 0.922 28 H 0.031 0.969 29 H 0.046 0.954 30 H 0.041 0.959 31 H 0.076 0.924 32 H 0.082 0.918 33 H 0.035 0.965 34 H 0.035 0.965 35 H 0.257 0.743 36 H 0.408 0.592 37 H 0.075 0.925 38 H 0.066 0.934 39 H 0.075 0.925 40 H 0.078 0.922 41 H 0.047 0.953 42 H 0.094 0.906 43 H 0.050 0.950 44 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.486 10.895 3.199 14.796 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.250 6.250 3 C -0.038 4.038 4 C 0.012 3.988 5 N -0.831 5.831 6 C 0.138 3.862 7 C -0.523 4.523 8 H 0.089 0.911 9 C -0.144 4.144 10 N -0.545 5.545 11 Si 0.717 3.283 12 H -0.199 1.199 13 H -0.215 1.215 14 H -0.214 1.214 15 S 2.784 3.216 16 O -0.943 6.943 17 O -0.983 6.983 18 N -0.886 5.886 19 C 0.009 3.991 20 H 0.124 0.876 21 C -0.163 4.163 22 C -0.194 4.194 23 C -0.021 4.021 24 O -0.287 6.287 25 C -0.034 4.034 26 H 0.044 0.956 27 H 0.097 0.903 28 H 0.050 0.950 29 H 0.064 0.936 30 H 0.059 0.941 31 H 0.095 0.905 32 H 0.101 0.899 33 H 0.052 0.948 34 H 0.053 0.947 35 H 0.067 0.933 36 H 0.240 0.760 37 H 0.093 0.907 38 H 0.085 0.915 39 H 0.093 0.907 40 H 0.097 0.903 41 H 0.065 0.935 42 H 0.112 0.888 43 H 0.069 0.931 44 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges 8.978 10.463 2.511 14.013 hybrid contribution -0.781 0.331 0.009 0.849 sum 8.196 10.794 2.520 13.786 Atomic orbital electron populations 1.22606 0.83707 1.02014 0.98249 1.88545 1.17137 1.24630 1.94647 1.22905 0.95028 0.86643 0.99222 1.21051 0.92682 0.97093 0.87972 1.57767 1.78268 1.19508 1.27551 1.19111 0.98169 0.71153 0.97771 1.21526 0.95902 0.91945 1.42944 0.91069 1.24839 0.96457 0.96856 0.96287 1.69934 1.31156 1.02113 1.51291 0.86609 0.85238 0.78575 0.77861 1.19883 1.21492 1.21414 1.02139 0.72542 0.72609 0.74291 1.93635 1.84449 1.70404 1.45837 1.93541 1.74034 1.43613 1.87126 1.56303 1.26521 1.15417 1.90338 1.21445 0.90891 0.89001 0.97715 0.87647 1.21860 0.94539 0.98135 1.01765 1.22221 0.99655 0.98964 0.98572 1.22607 0.86704 1.00212 0.92588 1.88069 1.23727 1.34940 1.81924 1.23215 0.93804 0.90629 0.95765 0.95622 0.90313 0.95047 0.93612 0.94061 0.90540 0.89946 0.94771 0.94683 0.93299 0.76023 0.90671 0.91496 0.90685 0.90313 0.93463 0.88821 0.93125 0.87292 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.55 10.90 101.05 1.10 1.65 16 2 O -0.33 -6.86 6.62 -35.23 -0.23 -7.10 16 3 C 0.04 0.72 6.22 37.16 0.23 0.95 16 4 C 0.14 2.30 5.81 -4.04 -0.02 2.28 16 5 N -0.99 -19.51 2.59 -115.66 -0.30 -19.81 16 6 C 0.26 6.29 3.87 -5.20 -0.02 6.27 16 7 C -0.48 -13.28 7.22 -34.44 -0.25 -13.53 16 8 H 0.07 1.98 6.09 -52.49 -0.32 1.66 16 9 C 0.06 1.58 5.46 -17.82 -0.10 1.48 16 10 N -0.90 -26.75 13.29 55.43 0.74 -26.01 16 11 Si 0.89 22.30 29.54 -169.99 -5.02 17.28 16 12 H -0.27 -6.70 7.11 56.52 0.40 -6.30 16 13 H -0.29 -7.31 7.11 56.52 0.40 -6.91 16 14 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 15 S 2.78 52.93 6.03 -107.50 -0.65 52.28 16 16 O -0.96 -22.61 16.45 -57.17 -0.94 -23.56 16 17 O -1.00 -19.74 17.11 -57.17 -0.98 -20.71 16 18 N -1.13 -15.87 5.54 -4.77 -0.03 -15.89 16 19 C 0.12 1.68 3.01 -67.79 -0.20 1.48 16 20 H 0.11 1.84 7.14 -51.93 -0.37 1.47 16 21 C -0.12 -1.37 5.56 -26.54 -0.15 -1.51 16 22 C -0.16 -1.60 6.13 -26.59 -0.16 -1.76 16 23 C 0.06 0.61 6.84 37.20 0.25 0.86 16 24 O -0.37 -5.59 10.77 -35.23 -0.38 -5.97 16 25 C 0.04 0.63 6.45 37.20 0.24 0.87 16 26 H 0.03 0.37 8.14 -51.93 -0.42 -0.05 16 27 H 0.08 1.41 8.14 -51.93 -0.42 0.98 16 28 H 0.03 0.54 8.14 -51.93 -0.42 0.11 16 29 H 0.05 0.85 8.14 -51.93 -0.42 0.43 16 30 H 0.04 0.59 8.14 -51.93 -0.42 0.17 16 31 H 0.08 1.03 7.61 -51.93 -0.40 0.63 16 32 H 0.08 1.29 8.00 -51.93 -0.42 0.88 16 33 H 0.03 0.89 7.24 -51.93 -0.38 0.52 16 34 H 0.04 0.89 8.00 -51.92 -0.42 0.47 16 35 H 0.26 7.31 8.31 -40.82 -0.34 6.97 16 36 H 0.41 4.46 8.84 -34.47 -0.30 4.16 16 37 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 38 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 39 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 40 H 0.08 0.90 8.14 -51.93 -0.42 0.48 16 41 H 0.05 0.44 8.14 -51.93 -0.42 0.01 16 42 H 0.09 0.89 8.14 -51.93 -0.42 0.47 16 43 H 0.05 0.60 8.14 -51.93 -0.42 0.17 16 44 H 0.11 1.75 6.64 -51.93 -0.34 1.41 16 LS Contribution 362.30 15.07 5.46 5.46 Total: -1.00 -34.66 362.30 -8.56 -43.22 By element: Atomic # 1 Polarization: 8.92 SS G_CDS: -7.15 Total: 1.77 kcal Atomic # 6 Polarization: -1.87 SS G_CDS: 0.92 Total: -0.95 kcal Atomic # 7 Polarization: -62.13 SS G_CDS: 0.41 Total: -61.72 kcal Atomic # 8 Polarization: -54.81 SS G_CDS: -2.53 Total: -57.34 kcal Atomic # 14 Polarization: 22.30 SS G_CDS: -5.02 Total: 17.28 kcal Atomic # 16 Polarization: 52.93 SS G_CDS: -0.65 Total: 52.28 kcal Total LS contribution 5.46 Total: 5.46 kcal Total: -34.66 -8.56 -43.22 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000330406979.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -117.728 kcal (2) G-P(sol) polarization free energy of solvation -34.662 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -152.390 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.557 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.219 kcal (6) G-S(sol) free energy of system = (1) + (5) -160.947 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds