Wall clock time and date at job start Fri Apr 10 2020 18:28:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.42898 * 113.99979 * 2 1 4 4 C 1.53000 * 109.47149 * 179.97438 * 3 2 1 5 5 N 1.46501 * 109.47125 * 64.99761 * 4 3 2 6 6 C 1.46497 * 120.00087 * 275.00213 * 5 4 3 7 7 C 1.50698 * 109.47172 * 84.99868 * 6 5 4 8 8 H 1.07994 * 120.00278 * 0.02562 * 7 6 5 9 9 C 1.37886 * 119.99827 * 179.97438 * 7 6 5 10 10 N 1.31507 * 120.00078 * 0.02562 * 9 7 6 11 11 Si 1.86802 * 119.99700 * 179.97438 * 9 7 6 12 12 H 1.48500 * 109.47217 * 0.02562 * 11 9 7 13 13 H 1.48506 * 109.46635 * 120.00213 * 11 9 7 14 14 H 1.48495 * 109.47147 * 239.99785 * 11 9 7 15 15 S 1.65603 * 119.99992 * 95.00086 * 5 4 3 16 16 O 1.42099 * 106.40055 * 203.54068 * 15 5 4 17 17 O 1.42099 * 106.39816 * 336.46077 * 15 5 4 18 18 N 1.65595 * 107.21645 * 89.99898 * 15 5 4 19 19 C 1.46501 * 119.99988 * 65.00205 * 18 15 5 20 20 H 1.09002 * 109.52535 * 24.99862 * 19 18 15 21 21 C 1.53181 * 109.52374 * 145.12475 * 19 18 15 22 22 C 1.53183 * 109.03478 * 176.82273 * 21 19 18 23 23 C 1.53087 * 109.21483 * 303.11706 * 22 21 19 24 24 O 1.42899 * 109.41730 * 57.56869 * 23 22 21 25 25 C 1.42903 * 114.09965 * 298.84601 * 24 23 22 26 26 H 1.09002 * 109.47382 * 300.00227 * 1 2 3 27 27 H 1.09001 * 109.46938 * 180.02562 * 1 2 3 28 28 H 1.09004 * 109.46926 * 60.00334 * 1 2 3 29 29 H 1.09000 * 109.47170 * 299.99544 * 3 2 1 30 30 H 1.09004 * 109.47235 * 59.99983 * 3 2 1 31 31 H 1.08998 * 109.47145 * 185.00090 * 4 3 2 32 32 H 1.08996 * 109.47046 * 304.99741 * 4 3 2 33 33 H 1.09003 * 109.47434 * 204.99813 * 6 5 4 34 34 H 1.09007 * 109.46951 * 324.99748 * 6 5 4 35 35 H 0.97003 * 120.00061 * 179.97438 * 10 9 7 36 36 H 0.97003 * 120.00237 * 245.00277 * 18 15 5 37 37 H 1.09003 * 109.54157 * 296.75690 * 21 19 18 38 38 H 1.09001 * 109.54509 * 57.01292 * 21 19 18 39 39 H 1.09001 * 109.52777 * 183.17059 * 22 21 19 40 40 H 1.09004 * 109.51887 * 63.04852 * 22 21 19 41 41 H 1.09004 * 109.47819 * 297.58792 * 23 22 21 42 42 H 1.08994 * 109.49149 * 177.56376 * 23 22 21 43 43 H 1.08999 * 109.47918 * 301.16955 * 25 24 23 44 44 H 1.09003 * 109.48936 * 181.14234 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5355 1.1846 0.0006 5 7 3.9767 0.5639 -1.2508 6 6 4.0015 -0.8955 -1.3757 7 6 2.6363 -1.3883 -1.7811 8 1 1.8308 -0.6847 -1.9312 9 6 2.4158 -2.7374 -1.9614 10 7 3.3967 -3.5941 -1.7792 11 14 0.7233 -3.3482 -2.4633 12 1 -0.1989 -2.1926 -2.6025 13 1 0.8199 -4.0631 -3.7613 14 1 0.2036 -4.2746 -1.4255 15 16 4.4474 1.5120 -2.5244 16 8 4.2787 0.7242 -3.6949 17 8 3.8196 2.7732 -2.3392 18 7 6.0752 1.7722 -2.3664 19 6 7.0101 0.6493 -2.4727 20 1 6.5599 -0.1446 -3.0687 21 6 8.3036 1.1220 -3.1435 22 6 9.3021 -0.0392 -3.1772 23 6 9.5365 -0.5437 -1.7509 24 8 8.2894 -0.9387 -1.1758 25 6 7.3331 0.1183 -1.0737 26 1 -0.3634 0.5139 0.8900 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3633 0.5138 -0.8901 29 1 1.6887 1.8463 -0.8900 30 1 1.6886 1.8464 0.8900 31 1 3.9785 2.1765 0.0902 32 1 3.8508 0.5686 0.8427 33 1 4.7311 -1.1831 -2.1327 34 1 4.2778 -1.3374 -0.4183 35 1 3.2415 -4.5433 -1.9057 36 1 6.4096 2.6680 -2.2035 37 1 8.0884 1.4488 -4.1608 38 1 8.7276 1.9499 -2.5753 39 1 10.2456 0.3037 -3.6020 40 1 8.9001 -0.8476 -3.7880 41 1 9.9772 0.2529 -1.1514 42 1 10.2130 -1.3980 -1.7739 43 1 7.7450 0.9235 -0.4653 44 1 6.4222 -0.2590 -0.6089 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000330406979.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:28:40 Heat of formation + Delta-G solvation = -189.063840 kcal Electronic energy + Delta-G solvation = -28047.903601 eV Core-core repulsion = 24126.514352 eV Total energy + Delta-G solvation = -3921.389249 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 322.144 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -40.39777 -38.96284 -38.25979 -36.87328 -36.76936 -36.40562 -34.42106 -33.54956 -30.95514 -30.18522 -28.37595 -26.87494 -25.99323 -24.50117 -24.12055 -23.27094 -21.54957 -20.35685 -18.92673 -18.55381 -18.17077 -17.75944 -17.06858 -17.04021 -16.88689 -16.50086 -16.29862 -15.96046 -15.71487 -15.65401 -15.05422 -14.63104 -14.40964 -14.35102 -13.94977 -13.71471 -13.56408 -13.31274 -13.17948 -13.15408 -12.95051 -12.91940 -12.77394 -12.69293 -12.48959 -12.24485 -12.08090 -11.92176 -11.81392 -11.69875 -11.52015 -11.34774 -10.99781 -10.41490 -10.18231 -10.11166 -9.74746 -7.99880 -5.99725 -0.34418 1.39314 1.42450 1.52406 2.00324 2.50948 2.61716 3.05508 3.12277 3.38563 3.45611 3.66118 3.82345 3.95515 3.97601 4.07262 4.22385 4.29773 4.44100 4.44603 4.53342 4.57592 4.61068 4.65357 4.66367 4.82217 4.88679 4.90722 4.93682 4.96192 5.05892 5.09592 5.19581 5.33289 5.37241 5.60094 5.87069 6.00622 6.18628 6.33616 6.35634 6.60410 7.05296 7.61607 9.09500 Molecular weight = 322.14amu Principal moments of inertia in cm(-1) A = 0.013709 B = 0.005563 C = 0.004666 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2041.915699 B = 5032.396146 C = 5999.779323 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.370 6.370 3 C 0.035 3.965 4 C 0.129 3.871 5 N -0.991 5.991 6 C 0.283 3.717 7 C -0.484 4.484 8 H 0.066 0.934 9 C 0.002 3.998 10 N -0.937 5.937 11 Si 0.938 3.062 12 H -0.265 1.265 13 H -0.292 1.292 14 H -0.279 1.279 15 S 2.792 3.208 16 O -1.011 7.011 17 O -1.004 7.004 18 N -1.104 6.104 19 C 0.115 3.885 20 H 0.063 0.937 21 C -0.120 4.120 22 C -0.153 4.153 23 C 0.048 3.952 24 O -0.403 6.403 25 C 0.047 3.953 26 H 0.060 0.940 27 H 0.068 0.932 28 H 0.028 0.972 29 H 0.030 0.970 30 H 0.080 0.920 31 H 0.115 0.885 32 H 0.091 0.909 33 H 0.009 0.991 34 H 0.021 0.979 35 H 0.257 0.743 36 H 0.427 0.573 37 H 0.076 0.924 38 H 0.099 0.901 39 H 0.108 0.892 40 H 0.056 0.944 41 H 0.073 0.927 42 H 0.105 0.895 43 H 0.083 0.917 44 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.495 13.116 4.194 17.313 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.289 6.289 3 C -0.044 4.044 4 C 0.003 3.997 5 N -0.832 5.832 6 C 0.160 3.840 7 C -0.523 4.523 8 H 0.084 0.916 9 C -0.194 4.194 10 N -0.580 5.580 11 Si 0.766 3.234 12 H -0.189 1.189 13 H -0.219 1.219 14 H -0.205 1.205 15 S 2.800 3.200 16 O -0.995 6.995 17 O -0.988 6.988 18 N -0.868 5.868 19 C 0.007 3.993 20 H 0.081 0.919 21 C -0.159 4.159 22 C -0.192 4.192 23 C -0.028 4.028 24 O -0.321 6.321 25 C -0.032 4.032 26 H 0.078 0.922 27 H 0.087 0.913 28 H 0.047 0.953 29 H 0.049 0.951 30 H 0.098 0.902 31 H 0.133 0.867 32 H 0.109 0.891 33 H 0.027 0.973 34 H 0.039 0.961 35 H 0.066 0.934 36 H 0.264 0.736 37 H 0.095 0.905 38 H 0.117 0.883 39 H 0.127 0.873 40 H 0.074 0.926 41 H 0.092 0.908 42 H 0.123 0.877 43 H 0.101 0.899 44 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges 9.970 12.732 3.522 16.550 hybrid contribution -1.026 -0.275 -0.274 1.097 sum 8.944 12.458 3.248 15.676 Atomic orbital electron populations 1.22704 0.82481 1.01935 0.99807 1.88450 1.18763 1.26719 1.94939 1.23095 0.95317 0.85663 1.00289 1.21431 0.92630 0.98925 0.86683 1.57581 1.79136 1.17559 1.28947 1.18521 0.95872 0.73750 0.95905 1.21843 0.97004 0.91888 1.41603 0.91611 1.25552 0.99560 0.97388 0.96911 1.70045 1.32822 1.02202 1.52929 0.85804 0.81894 0.78352 0.77394 1.18929 1.21869 1.20471 1.01427 0.73417 0.71822 0.73345 1.93574 1.85712 1.71723 1.48442 1.93523 1.74963 1.43262 1.87027 1.55702 1.24576 1.16613 1.89891 1.21468 0.91969 0.87957 0.97908 0.91874 1.21896 0.92723 0.99324 1.01937 1.22233 1.00785 0.98035 0.98127 1.22897 0.85191 1.01715 0.93017 1.88023 1.25399 1.36156 1.82557 1.23126 0.93224 0.91171 0.95631 0.92159 0.91300 0.95299 0.95143 0.90173 0.86733 0.89105 0.97266 0.96068 0.93447 0.73585 0.90520 0.88268 0.87344 0.92553 0.90843 0.87732 0.89859 0.90064 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.94 10.90 113.37 1.24 2.17 16 2 O -0.37 -15.10 6.62 -148.98 -0.99 -16.08 16 3 C 0.03 1.17 6.22 71.98 0.45 1.61 16 4 C 0.13 4.08 5.81 86.38 0.50 4.58 16 5 N -0.99 -39.31 2.59 -519.85 -1.35 -40.66 16 6 C 0.28 14.23 3.87 85.63 0.33 14.56 16 7 C -0.48 -27.27 7.22 25.60 0.18 -27.09 16 8 H 0.07 3.73 6.09 -2.91 -0.02 3.71 16 9 C 0.00 0.12 5.46 84.66 0.46 0.58 16 10 N -0.94 -57.30 13.29 21.45 0.28 -57.02 16 11 Si 0.94 46.57 29.54 68.60 2.03 48.60 16 12 H -0.27 -12.60 7.11 99.48 0.71 -11.90 16 13 H -0.29 -14.56 7.11 99.48 0.71 -13.85 16 14 H -0.28 -13.33 7.11 99.48 0.71 -12.63 16 15 S 2.79 106.25 6.03 -56.49 -0.34 105.91 16 16 O -1.01 -49.26 16.45 -128.00 -2.11 -51.37 16 17 O -1.00 -38.31 17.11 -128.00 -2.19 -40.50 16 18 N -1.10 -29.68 5.54 -169.01 -0.94 -30.62 16 19 C 0.11 3.24 3.01 45.08 0.14 3.38 16 20 H 0.06 2.34 7.14 -2.39 -0.02 2.32 16 21 C -0.12 -2.36 5.56 30.72 0.17 -2.19 16 22 C -0.15 -2.84 6.13 30.68 0.19 -2.65 16 23 C 0.05 0.94 6.84 72.01 0.49 1.43 16 24 O -0.40 -12.09 10.77 -148.98 -1.60 -13.69 16 25 C 0.05 1.30 6.45 72.01 0.46 1.77 16 26 H 0.06 1.60 8.14 -2.39 -0.02 1.58 16 27 H 0.07 2.42 8.14 -2.39 -0.02 2.40 16 28 H 0.03 0.97 8.14 -2.38 -0.02 0.95 16 29 H 0.03 1.10 8.14 -2.39 -0.02 1.08 16 30 H 0.08 2.04 8.14 -2.39 -0.02 2.02 16 31 H 0.11 2.72 7.61 -2.39 -0.02 2.71 16 32 H 0.09 2.73 8.00 -2.39 -0.02 2.71 16 33 H 0.01 0.52 7.24 -2.39 -0.02 0.50 16 34 H 0.02 1.12 8.00 -2.38 -0.02 1.10 16 35 H 0.26 15.02 8.31 -92.71 -0.77 14.25 16 36 H 0.43 8.12 8.84 -96.74 -0.86 7.26 16 37 H 0.08 1.51 8.14 -2.39 -0.02 1.49 16 38 H 0.10 1.35 8.14 -2.39 -0.02 1.33 16 39 H 0.11 1.31 8.14 -2.39 -0.02 1.29 16 40 H 0.06 1.29 8.14 -2.38 -0.02 1.27 16 41 H 0.07 1.08 8.14 -2.38 -0.02 1.06 16 42 H 0.10 1.79 8.14 -2.39 -0.02 1.77 16 43 H 0.08 1.72 8.14 -2.39 -0.02 1.70 16 44 H 0.08 2.68 6.64 -2.39 -0.02 2.66 16 Total: -1.00 -78.01 362.30 -2.44 -80.46 By element: Atomic # 1 Polarization: 16.66 SS G_CDS: 0.14 Total: 16.80 kcal Atomic # 6 Polarization: -6.45 SS G_CDS: 4.62 Total: -1.84 kcal Atomic # 7 Polarization: -126.29 SS G_CDS: -2.00 Total: -128.29 kcal Atomic # 8 Polarization: -114.75 SS G_CDS: -6.89 Total: -121.64 kcal Atomic # 14 Polarization: 46.57 SS G_CDS: 2.03 Total: 48.60 kcal Atomic # 16 Polarization: 106.25 SS G_CDS: -0.34 Total: 105.91 kcal Total: -78.01 -2.44 -80.46 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000330406979.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -108.608 kcal (2) G-P(sol) polarization free energy of solvation -78.013 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -186.621 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.443 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.456 kcal (6) G-S(sol) free energy of system = (1) + (5) -189.064 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds