Wall clock time and date at job start Fri Apr 10 2020 18:28:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86802 * 119.99894 * 2 1 4 4 H 1.48496 * 109.47112 * 269.99553 * 3 2 1 5 5 H 1.48499 * 109.47296 * 29.99937 * 3 2 1 6 6 H 1.48498 * 109.47070 * 149.99826 * 3 2 1 7 7 C 1.37875 * 120.00370 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00465 * 180.02562 * 7 2 1 9 9 C 1.50707 * 119.99721 * 0.02562 * 7 2 1 10 10 C 1.53004 * 109.46995 * 180.02562 * 9 7 2 11 11 C 1.50698 * 109.46809 * 180.02562 * 10 9 7 12 12 O 1.21273 * 120.00028 * 359.97438 * 11 10 9 13 13 N 1.34776 * 119.99737 * 180.02562 * 11 10 9 14 14 C 1.46964 * 120.59288 * 179.97438 * 13 11 10 15 15 C 1.53374 * 108.63589 * 235.24347 * 14 13 11 16 16 N 1.46963 * 108.63691 * 310.57928 * 15 14 13 17 17 C 1.34777 * 120.59386 * 235.20446 * 16 15 14 18 18 O 1.21274 * 120.00135 * 0.27313 * 17 16 15 19 19 C 1.50706 * 119.99766 * 179.97438 * 17 16 15 20 20 N 1.46500 * 109.46949 * 179.97438 * 19 17 16 21 21 C 1.34593 * 126.43882 * 124.71195 * 20 19 17 22 22 N 1.31079 * 106.68029 * 179.87822 * 21 20 19 23 23 N 1.28844 * 107.98726 * 0.38782 * 22 21 20 24 24 N 1.28738 * 109.39875 * 359.75074 * 23 22 21 25 25 C 1.46968 * 118.81077 * 55.47157 * 16 15 14 26 26 C 1.46973 * 120.59419 * 0.02562 * 13 11 10 27 27 H 0.97000 * 119.99603 * 359.97438 * 1 2 3 28 28 H 1.08998 * 109.46885 * 60.00428 * 9 7 2 29 29 H 1.08999 * 109.46889 * 299.99985 * 9 7 2 30 30 H 1.08996 * 109.47106 * 59.99404 * 10 9 7 31 31 H 1.08999 * 109.46688 * 299.99955 * 10 9 7 32 32 H 1.09000 * 109.60599 * 115.50580 * 14 13 11 33 33 H 1.08994 * 109.60989 * 354.99164 * 14 13 11 34 34 H 1.08994 * 109.60933 * 190.83073 * 15 14 13 35 35 H 1.08997 * 109.74815 * 70.40256 * 15 14 13 36 36 H 1.09000 * 109.47161 * 299.99737 * 19 17 16 37 37 H 1.09001 * 109.46740 * 59.99879 * 19 17 16 38 38 H 1.08002 * 126.65879 * 0.02562 * 21 20 19 39 39 H 1.09004 * 109.60917 * 64.27446 * 25 16 15 40 40 H 1.09008 * 109.60767 * 184.77975 * 25 16 15 41 41 H 1.08997 * 109.60526 * 244.50045 * 26 13 11 42 42 H 1.09000 * 109.60597 * 5.00342 * 26 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4967 2.0464 -1.4000 5 1 1.4466 2.6527 0.7000 6 1 3.5466 1.4402 0.7001 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2511 -2.4992 0.0005 10 6 2.2454 -3.6621 0.0018 11 6 1.4919 -4.9671 0.0012 12 8 0.2791 -4.9671 0.0003 13 7 2.1658 -6.1343 0.0026 14 6 1.4442 -7.4146 0.0026 15 6 1.9240 -8.2477 1.1977 16 7 3.3936 -8.2629 1.1998 17 6 4.0675 -9.4300 1.2021 18 8 3.4612 -10.4803 1.1973 19 6 5.5746 -9.4299 1.2036 20 7 6.0629 -10.8111 1.2066 21 6 6.9117 -11.3609 0.3184 22 7 7.0867 -12.6067 0.6866 23 7 6.3757 -12.8136 1.7410 24 7 5.7558 -11.7307 2.0580 25 6 4.1151 -6.9825 1.2054 26 6 3.6354 -6.1495 0.0054 27 1 -0.4849 0.8401 0.0004 28 1 0.6249 -2.5571 -0.8897 29 1 0.6241 -2.5567 0.8903 30 1 2.8714 -3.6039 0.8922 31 1 2.8727 -3.6046 -0.8877 32 1 1.6509 -7.9509 -0.9236 33 1 0.3735 -7.2311 0.0909 34 1 1.5478 -9.2667 1.1079 35 1 1.5615 -7.8042 2.1250 36 1 5.9388 -8.9173 0.3133 37 1 5.9369 -8.9149 2.0933 38 1 7.3630 -10.8701 -0.5312 39 1 3.9050 -6.4483 2.1321 40 1 5.1863 -7.1659 1.1208 41 1 3.9983 -6.5955 -0.9206 42 1 4.0116 -5.1305 0.0955 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000330902981.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:28:52 Heat of formation + Delta-G solvation = 67.467810 kcal Electronic energy + Delta-G solvation = -26686.772118 eV Core-core repulsion = 22705.648467 eV Total energy + Delta-G solvation = -3981.123651 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 322.154 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -44.54606 -40.95125 -39.54046 -37.31469 -35.90254 -34.31914 -33.67958 -32.83659 -32.27231 -30.90137 -29.89767 -27.97728 -25.88386 -24.40368 -24.22687 -23.89415 -22.90595 -21.53823 -20.19938 -18.87081 -18.40408 -17.96816 -17.21829 -16.67139 -16.64385 -16.27608 -16.11432 -15.71587 -15.66912 -15.56277 -14.58300 -14.51079 -14.40745 -13.98222 -13.51798 -13.50389 -13.08657 -12.84557 -12.50816 -12.31267 -12.24968 -12.04051 -11.98587 -11.68910 -11.58289 -11.50582 -11.23442 -11.02330 -10.80846 -10.68109 -10.40098 -10.10661 -9.77174 -9.64131 -9.34550 -9.15185 -8.58789 -8.41769 -6.05822 -4.11114 0.81791 1.32930 1.81010 1.92287 2.22510 2.96068 3.00319 3.25653 3.32386 3.33970 3.41268 3.66604 3.77743 4.04918 4.23992 4.32433 4.34407 4.38959 4.60669 4.74229 4.93739 4.96941 5.00118 5.07847 5.26405 5.29323 5.29941 5.34502 5.49379 5.59877 5.63125 5.88066 5.99229 6.01813 6.39903 6.61672 6.72265 7.37790 7.46107 7.62728 7.72733 7.95467 8.24410 8.25534 8.50872 8.96948 9.53094 11.04957 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.028019 B = 0.002205 C = 0.002083 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 999.091662 B =12697.193073 C =13436.533022 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.888 5.888 2 C 0.058 3.942 3 Si 0.893 3.107 4 H -0.280 1.280 5 H -0.286 1.286 6 H -0.274 1.274 7 C -0.529 4.529 8 H 0.056 0.944 9 C 0.036 3.964 10 C -0.128 4.128 11 C 0.513 3.487 12 O -0.526 6.526 13 N -0.629 5.629 14 C 0.098 3.902 15 C 0.100 3.900 16 N -0.604 5.604 17 C 0.504 3.496 18 O -0.510 6.510 19 C 0.096 3.904 20 N -0.302 5.302 21 C 0.161 3.839 22 N -0.306 5.306 23 N -0.078 5.078 24 N -0.063 5.063 25 C 0.085 3.915 26 C 0.095 3.905 27 H 0.262 0.738 28 H 0.023 0.977 29 H 0.023 0.977 30 H 0.080 0.920 31 H 0.080 0.920 32 H 0.067 0.933 33 H 0.107 0.893 34 H 0.104 0.896 35 H 0.079 0.921 36 H 0.145 0.855 37 H 0.137 0.863 38 H 0.236 0.764 39 H 0.088 0.912 40 H 0.094 0.906 41 H 0.072 0.928 42 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.337 -16.562 0.322 22.575 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.526 5.526 2 C -0.144 4.144 3 Si 0.721 3.279 4 H -0.206 1.206 5 H -0.212 1.212 6 H -0.199 1.199 7 C -0.568 4.568 8 H 0.074 0.926 9 C -0.001 4.001 10 C -0.168 4.168 11 C 0.304 3.696 12 O -0.400 6.400 13 N -0.365 5.365 14 C -0.025 4.025 15 C -0.022 4.022 16 N -0.338 5.338 17 C 0.289 3.711 18 O -0.384 6.384 19 C -0.030 4.030 20 N -0.104 5.104 21 C -0.138 4.138 22 N -0.153 5.153 23 N -0.072 5.072 24 N -0.050 5.050 25 C -0.039 4.039 26 C -0.030 4.030 27 H 0.071 0.929 28 H 0.042 0.958 29 H 0.042 0.958 30 H 0.099 0.901 31 H 0.098 0.902 32 H 0.085 0.915 33 H 0.125 0.875 34 H 0.122 0.878 35 H 0.098 0.902 36 H 0.163 0.837 37 H 0.155 0.845 38 H 0.252 0.748 39 H 0.106 0.894 40 H 0.112 0.888 41 H 0.090 0.910 42 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges 13.948 -18.135 1.148 22.907 hybrid contribution 0.642 2.012 -0.639 2.207 sum 14.590 -16.123 0.509 21.750 Atomic orbital electron populations 1.69990 1.06077 1.26713 1.49851 1.25031 0.94835 0.99292 0.95217 0.86587 0.79735 0.83488 0.78099 1.20648 1.21194 1.19890 1.21176 0.92853 0.90927 1.51805 0.92603 1.18917 0.93165 0.89361 0.98680 1.21899 1.00820 0.91790 1.02271 1.21689 0.88513 0.85337 0.74059 1.90682 1.14394 1.86909 1.48046 1.48273 1.06019 1.05978 1.76278 1.21875 0.99416 0.84014 0.97240 1.22133 0.77947 1.02614 0.99544 1.48001 1.07680 1.05237 1.72927 1.20116 0.88755 0.84347 0.77917 1.90856 1.68978 1.30444 1.48150 1.22082 0.94703 0.77709 1.08516 1.48192 1.31099 1.11869 1.19272 1.27772 0.95633 0.91676 0.98676 1.75013 1.19281 1.12597 1.08441 1.78698 1.05281 1.15443 1.07759 1.79035 1.17896 0.93595 1.14435 1.22462 0.96386 0.84219 1.00834 1.22132 0.81190 1.02312 0.97319 0.92854 0.95820 0.95811 0.90144 0.90151 0.91472 0.87507 0.87799 0.90239 0.83711 0.84488 0.74770 0.89358 0.88827 0.90968 0.87270 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.33 13.29 55.43 0.74 -25.59 16 2 C 0.06 1.62 5.46 -17.82 -0.10 1.52 16 3 Si 0.89 20.61 29.54 -169.99 -5.02 15.58 16 4 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 5 H -0.29 -6.62 7.11 56.52 0.40 -6.22 16 6 H -0.27 -6.08 7.11 56.52 0.40 -5.68 16 7 C -0.53 -14.05 9.11 -34.44 -0.31 -14.36 16 8 H 0.06 1.38 7.74 -52.49 -0.41 0.97 16 9 C 0.04 0.91 4.26 -27.88 -0.12 0.79 16 10 C -0.13 -2.25 3.98 -27.88 -0.11 -2.36 16 11 C 0.51 8.60 7.70 -10.99 -0.08 8.52 16 12 O -0.53 -11.30 15.39 5.56 0.09 -11.21 16 13 N -0.63 -7.19 2.95 -172.25 -0.51 -7.69 16 14 C 0.10 1.02 6.59 -3.60 -0.02 1.00 16 15 C 0.10 0.89 6.59 -3.60 -0.02 0.86 16 16 N -0.60 -4.09 2.94 -172.25 -0.51 -4.60 16 17 C 0.50 3.83 7.71 -10.98 -0.08 3.74 16 18 O -0.51 -6.46 15.11 5.56 0.08 -6.38 16 19 C 0.10 0.31 5.31 -5.19 -0.03 0.28 16 20 N -0.30 -2.23 3.19 -63.73 -0.20 -2.43 16 21 C 0.16 0.99 12.79 -90.39 -1.16 -0.16 16 22 N -0.31 -3.33 12.36 29.59 0.37 -2.96 16 23 N -0.08 -1.02 13.43 60.35 0.81 -0.21 16 24 N -0.06 -0.75 12.29 60.35 0.74 -0.01 16 25 C 0.08 0.35 6.53 -3.40 -0.02 0.33 16 26 C 0.09 0.62 6.52 -3.39 -0.02 0.60 16 27 H 0.26 7.31 8.31 -40.82 -0.34 6.97 16 28 H 0.02 0.66 8.10 -51.93 -0.42 0.23 16 29 H 0.02 0.65 8.10 -51.93 -0.42 0.23 16 30 H 0.08 1.23 7.72 -51.93 -0.40 0.83 16 31 H 0.08 1.26 7.91 -51.93 -0.41 0.85 16 32 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 33 H 0.11 1.32 6.99 -51.93 -0.36 0.96 16 34 H 0.10 0.99 6.99 -51.93 -0.36 0.63 16 35 H 0.08 0.73 8.14 -51.93 -0.42 0.31 16 36 H 0.15 -0.23 7.67 -51.93 -0.40 -0.62 16 37 H 0.14 0.10 7.90 -51.93 -0.41 -0.32 16 38 H 0.24 0.03 8.06 -52.49 -0.42 -0.39 16 39 H 0.09 0.41 8.14 -51.93 -0.42 -0.01 16 40 H 0.09 -0.02 5.91 -51.92 -0.31 -0.33 16 41 H 0.07 0.36 8.14 -51.93 -0.42 -0.06 16 42 H 0.11 0.68 5.91 -51.93 -0.31 0.37 16 LS Contribution 354.24 15.07 5.34 5.34 Total: -1.00 -40.84 354.24 -5.62 -46.46 By element: Atomic # 1 Polarization: -1.57 SS G_CDS: -5.46 Total: -7.03 kcal Atomic # 6 Polarization: 2.83 SS G_CDS: -2.09 Total: 0.74 kcal Atomic # 7 Polarization: -44.94 SS G_CDS: 1.44 Total: -43.50 kcal Atomic # 8 Polarization: -17.76 SS G_CDS: 0.17 Total: -17.59 kcal Atomic # 14 Polarization: 20.61 SS G_CDS: -5.02 Total: 15.58 kcal Total LS contribution 5.34 Total: 5.34 kcal Total: -40.84 -5.62 -46.46 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000330902981.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 113.924 kcal (2) G-P(sol) polarization free energy of solvation -40.838 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 73.086 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.618 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.456 kcal (6) G-S(sol) free energy of system = (1) + (5) 67.468 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds