Wall clock time and date at job start Fri Apr 10 2020 18:28:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86802 * 119.99894 * 2 1 4 4 H 1.48496 * 109.47112 * 269.99553 * 3 2 1 5 5 H 1.48499 * 109.47296 * 29.99937 * 3 2 1 6 6 H 1.48498 * 109.47070 * 149.99826 * 3 2 1 7 7 C 1.37875 * 120.00370 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00465 * 180.02562 * 7 2 1 9 9 C 1.50707 * 119.99721 * 0.02562 * 7 2 1 10 10 C 1.53004 * 109.46995 * 180.02562 * 9 7 2 11 11 C 1.50698 * 109.46809 * 180.02562 * 10 9 7 12 12 O 1.21273 * 120.00028 * 359.97438 * 11 10 9 13 13 N 1.34776 * 119.99737 * 180.02562 * 11 10 9 14 14 C 1.46964 * 120.59288 * 179.97438 * 13 11 10 15 15 C 1.53374 * 108.63589 * 235.24347 * 14 13 11 16 16 N 1.46963 * 108.63691 * 310.57928 * 15 14 13 17 17 C 1.34777 * 120.59386 * 235.20446 * 16 15 14 18 18 O 1.21274 * 120.00135 * 0.27313 * 17 16 15 19 19 C 1.50706 * 119.99766 * 179.97438 * 17 16 15 20 20 N 1.46500 * 109.46949 * 179.97438 * 19 17 16 21 21 C 1.34593 * 126.43882 * 124.71195 * 20 19 17 22 22 N 1.31079 * 106.68029 * 179.87822 * 21 20 19 23 23 N 1.28844 * 107.98726 * 0.38782 * 22 21 20 24 24 N 1.28738 * 109.39875 * 359.75074 * 23 22 21 25 25 C 1.46968 * 118.81077 * 55.47157 * 16 15 14 26 26 C 1.46973 * 120.59419 * 0.02562 * 13 11 10 27 27 H 0.97000 * 119.99603 * 359.97438 * 1 2 3 28 28 H 1.08998 * 109.46885 * 60.00428 * 9 7 2 29 29 H 1.08999 * 109.46889 * 299.99985 * 9 7 2 30 30 H 1.08996 * 109.47106 * 59.99404 * 10 9 7 31 31 H 1.08999 * 109.46688 * 299.99955 * 10 9 7 32 32 H 1.09000 * 109.60599 * 115.50580 * 14 13 11 33 33 H 1.08994 * 109.60989 * 354.99164 * 14 13 11 34 34 H 1.08994 * 109.60933 * 190.83073 * 15 14 13 35 35 H 1.08997 * 109.74815 * 70.40256 * 15 14 13 36 36 H 1.09000 * 109.47161 * 299.99737 * 19 17 16 37 37 H 1.09001 * 109.46740 * 59.99879 * 19 17 16 38 38 H 1.08002 * 126.65879 * 0.02562 * 21 20 19 39 39 H 1.09004 * 109.60917 * 64.27446 * 25 16 15 40 40 H 1.09008 * 109.60767 * 184.77975 * 25 16 15 41 41 H 1.08997 * 109.60526 * 244.50045 * 26 13 11 42 42 H 1.09000 * 109.60597 * 5.00342 * 26 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4967 2.0464 -1.4000 5 1 1.4466 2.6527 0.7000 6 1 3.5466 1.4402 0.7001 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2511 -2.4992 0.0005 10 6 2.2454 -3.6621 0.0018 11 6 1.4919 -4.9671 0.0012 12 8 0.2791 -4.9671 0.0003 13 7 2.1658 -6.1343 0.0026 14 6 1.4442 -7.4146 0.0026 15 6 1.9240 -8.2477 1.1977 16 7 3.3936 -8.2629 1.1998 17 6 4.0675 -9.4300 1.2021 18 8 3.4612 -10.4803 1.1973 19 6 5.5746 -9.4299 1.2036 20 7 6.0629 -10.8111 1.2066 21 6 6.9117 -11.3609 0.3184 22 7 7.0867 -12.6067 0.6866 23 7 6.3757 -12.8136 1.7410 24 7 5.7558 -11.7307 2.0580 25 6 4.1151 -6.9825 1.2054 26 6 3.6354 -6.1495 0.0054 27 1 -0.4849 0.8401 0.0004 28 1 0.6249 -2.5571 -0.8897 29 1 0.6241 -2.5567 0.8903 30 1 2.8714 -3.6039 0.8922 31 1 2.8727 -3.6046 -0.8877 32 1 1.6509 -7.9509 -0.9236 33 1 0.3735 -7.2311 0.0909 34 1 1.5478 -9.2667 1.1079 35 1 1.5615 -7.8042 2.1250 36 1 5.9388 -8.9173 0.3133 37 1 5.9369 -8.9149 2.0933 38 1 7.3630 -10.8701 -0.5312 39 1 3.9050 -6.4483 2.1321 40 1 5.1863 -7.1659 1.1208 41 1 3.9983 -6.5955 -0.9206 42 1 4.0116 -5.1305 0.0955 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000330902981.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:28:51 Heat of formation + Delta-G solvation = 35.319246 kcal Electronic energy + Delta-G solvation = -26688.166184 eV Core-core repulsion = 22705.648467 eV Total energy + Delta-G solvation = -3982.517718 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 322.154 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -45.14378 -41.65821 -40.58445 -38.21239 -36.46056 -35.58114 -35.21120 -33.51187 -33.31276 -32.32923 -30.39104 -28.89725 -27.45128 -25.24144 -24.82295 -24.48039 -24.00266 -22.79770 -21.07984 -19.68906 -19.06448 -18.78984 -18.36295 -17.72952 -17.22110 -17.07092 -16.87395 -16.80117 -16.64203 -16.46162 -16.25980 -15.17225 -15.04839 -14.91360 -14.73085 -14.22770 -14.18429 -13.82701 -13.59781 -13.39730 -13.25314 -13.12654 -12.79485 -12.63557 -12.57256 -12.49809 -12.37268 -12.18112 -12.10876 -11.88725 -11.53721 -11.45195 -11.26862 -10.99490 -10.69408 -10.54571 -10.37815 -9.42547 -8.15253 -6.29070 0.28555 0.96916 1.28400 1.31185 1.45487 1.47618 1.58217 1.67174 1.70492 2.09932 2.45664 3.02458 3.18593 3.44250 3.52591 3.64006 3.76820 3.96130 3.98036 4.02347 4.13654 4.21770 4.31631 4.40352 4.44823 4.50781 4.59563 4.63295 4.68104 4.73413 4.77248 5.00522 5.12601 5.17307 5.29620 5.49931 5.56785 5.66038 5.88529 6.12117 6.19565 6.39482 6.86571 6.90777 7.26342 7.41821 7.60347 8.97313 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.028019 B = 0.002205 C = 0.002083 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 999.091662 B =12697.193073 C =13436.533022 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.940 5.940 2 C -0.010 4.010 3 Si 0.972 3.028 4 H -0.274 1.274 5 H -0.292 1.292 6 H -0.250 1.250 7 C -0.537 4.537 8 H 0.083 0.917 9 C 0.039 3.961 10 C -0.113 4.113 11 C 0.511 3.489 12 O -0.592 6.592 13 N -0.616 5.616 14 C 0.102 3.898 15 C 0.109 3.891 16 N -0.600 5.600 17 C 0.501 3.499 18 O -0.571 6.571 19 C 0.093 3.907 20 N -0.299 5.299 21 C 0.186 3.814 22 N -0.349 5.349 23 N -0.121 5.121 24 N -0.098 5.098 25 C 0.085 3.915 26 C 0.081 3.919 27 H 0.261 0.739 28 H -0.023 1.023 29 H -0.021 1.021 30 H 0.113 0.887 31 H 0.109 0.891 32 H 0.080 0.920 33 H 0.076 0.924 34 H 0.092 0.908 35 H 0.071 0.929 36 H 0.210 0.790 37 H 0.172 0.828 38 H 0.297 0.703 39 H 0.086 0.914 40 H 0.155 0.845 41 H 0.102 0.898 42 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.421 -15.360 -0.507 25.558 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.580 5.580 2 C -0.208 4.208 3 Si 0.796 3.204 4 H -0.199 1.199 5 H -0.218 1.218 6 H -0.173 1.173 7 C -0.575 4.575 8 H 0.101 0.899 9 C 0.002 3.998 10 C -0.152 4.152 11 C 0.301 3.699 12 O -0.472 6.472 13 N -0.350 5.350 14 C -0.021 4.021 15 C -0.015 4.015 16 N -0.333 5.333 17 C 0.289 3.711 18 O -0.449 6.449 19 C -0.030 4.030 20 N -0.102 5.102 21 C -0.111 4.111 22 N -0.197 5.197 23 N -0.115 5.115 24 N -0.086 5.086 25 C -0.037 4.037 26 C -0.041 4.041 27 H 0.069 0.931 28 H -0.004 1.004 29 H -0.003 1.003 30 H 0.131 0.869 31 H 0.127 0.873 32 H 0.099 0.901 33 H 0.095 0.905 34 H 0.110 0.890 35 H 0.089 0.911 36 H 0.226 0.774 37 H 0.189 0.811 38 H 0.312 0.688 39 H 0.104 0.896 40 H 0.173 0.827 41 H 0.120 0.880 42 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges 19.130 -16.944 0.326 25.557 hybrid contribution -0.951 1.642 -0.438 1.947 sum 18.179 -15.303 -0.112 23.762 Atomic orbital electron populations 1.70188 1.08437 1.27670 1.51753 1.26160 0.95657 1.04060 0.94882 0.85342 0.78830 0.77785 0.78409 1.19910 1.21825 1.17345 1.21734 0.94194 0.91297 1.50238 0.89910 1.18720 0.93864 0.92844 0.94413 1.21639 0.99156 0.89303 1.05117 1.21544 0.87646 0.86753 0.73914 1.90666 1.17119 1.87919 1.51473 1.48206 1.08490 1.04455 1.73832 1.21837 0.97954 0.83733 0.98612 1.21807 0.80208 1.01291 0.98197 1.48047 1.06529 1.06480 1.72277 1.20914 0.90726 0.83268 0.76224 1.90852 1.70664 1.32597 1.50803 1.22691 0.90812 0.76231 1.13271 1.48460 1.30739 1.12557 1.18437 1.28831 0.93596 0.90222 0.98478 1.74893 1.20443 1.15605 1.08733 1.78661 1.06707 1.16772 1.09380 1.78936 1.18774 0.94468 1.16398 1.22756 0.99246 0.82217 0.99503 1.22658 0.77348 1.04088 1.00023 0.93060 1.00428 1.00300 0.86938 0.87250 0.90146 0.90522 0.88984 0.91114 0.77363 0.81059 0.68755 0.89565 0.82742 0.88035 0.86086 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -57.85 13.29 21.45 0.28 -57.57 16 2 C -0.01 -0.58 5.46 84.65 0.46 -0.12 16 3 Si 0.97 41.76 29.54 68.60 2.03 43.79 16 4 H -0.27 -11.37 7.11 99.48 0.71 -10.66 16 5 H -0.29 -12.72 7.11 99.48 0.71 -12.01 16 6 H -0.25 -9.69 7.11 99.48 0.71 -8.99 16 7 C -0.54 -28.23 9.11 25.60 0.23 -28.00 16 8 H 0.08 3.82 7.74 -2.91 -0.02 3.79 16 9 C 0.04 2.03 4.26 29.85 0.13 2.15 16 10 C -0.11 -3.79 3.98 29.85 0.12 -3.67 16 11 C 0.51 17.14 7.70 87.66 0.67 17.82 16 12 O -0.59 -27.16 15.39 -3.01 -0.05 -27.20 16 13 N -0.62 -12.94 2.95 -817.27 -2.41 -15.35 16 14 C 0.10 2.10 6.59 86.42 0.57 2.67 16 15 C 0.11 1.87 6.59 86.42 0.57 2.44 16 16 N -0.60 -6.04 2.94 -817.25 -2.40 -8.45 16 17 C 0.50 5.89 7.71 87.66 0.68 6.57 16 18 O -0.57 -13.99 15.11 -3.01 -0.05 -14.04 16 19 C 0.09 0.03 5.31 85.63 0.45 0.48 16 20 N -0.30 -3.30 3.19 -355.55 -1.13 -4.43 16 21 C 0.19 1.52 12.79 180.27 2.31 3.83 16 22 N -0.35 -7.09 12.36 -60.29 -0.75 -7.84 16 23 N -0.12 -3.20 13.43 37.01 0.50 -2.70 16 24 N -0.10 -2.25 12.29 37.02 0.46 -1.80 16 25 C 0.08 0.20 6.53 86.54 0.57 0.77 16 26 C 0.08 0.63 6.52 86.54 0.56 1.19 16 27 H 0.26 15.12 8.31 -92.71 -0.77 14.35 16 28 H -0.02 -1.37 8.10 -2.39 -0.02 -1.38 16 29 H -0.02 -1.28 8.10 -2.39 -0.02 -1.30 16 30 H 0.11 3.05 7.72 -2.39 -0.02 3.03 16 31 H 0.11 3.04 7.91 -2.39 -0.02 3.03 16 32 H 0.08 1.46 8.14 -2.39 -0.02 1.44 16 33 H 0.08 2.07 6.99 -2.39 -0.02 2.05 16 34 H 0.09 1.84 6.99 -2.39 -0.02 1.82 16 35 H 0.07 1.33 8.14 -2.39 -0.02 1.31 16 36 H 0.21 -2.63 7.67 -2.39 -0.02 -2.65 16 37 H 0.17 -1.01 7.90 -2.39 -0.02 -1.03 16 38 H 0.30 -1.99 8.06 -2.91 -0.02 -2.02 16 39 H 0.09 0.36 8.14 -2.38 -0.02 0.34 16 40 H 0.16 -1.46 5.91 -2.38 -0.01 -1.47 16 41 H 0.10 0.33 8.14 -2.39 -0.02 0.31 16 42 H 0.12 0.75 5.91 -2.39 -0.01 0.74 16 Total: -1.00 -103.59 354.24 4.85 -98.73 By element: Atomic # 1 Polarization: -10.34 SS G_CDS: 1.05 Total: -9.29 kcal Atomic # 6 Polarization: -1.18 SS G_CDS: 7.32 Total: 6.15 kcal Atomic # 7 Polarization: -92.68 SS G_CDS: -5.46 Total: -98.14 kcal Atomic # 8 Polarization: -41.15 SS G_CDS: -0.09 Total: -41.24 kcal Atomic # 14 Polarization: 41.76 SS G_CDS: 2.03 Total: 43.79 kcal Total: -103.59 4.85 -98.73 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000330902981.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 134.053 kcal (2) G-P(sol) polarization free energy of solvation -103.586 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.467 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.852 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -98.734 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.319 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds