Wall clock time and date at job start Fri Apr 10 2020 18:28:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.42892 * 114.00247 * 2 1 4 4 C 1.52997 * 109.47178 * 179.97438 * 3 2 1 5 5 H 1.09001 * 109.47375 * 175.00187 * 4 3 2 6 6 N 1.46504 * 109.47417 * 295.00239 * 4 3 2 7 7 S 1.65600 * 119.99584 * 265.00154 * 6 4 3 8 8 O 1.42103 * 106.40033 * 178.53723 * 7 6 4 9 9 O 1.42101 * 106.40350 * 311.45144 * 7 6 4 10 10 N 1.65599 * 107.22013 * 64.99557 * 7 6 4 11 11 C 1.46498 * 119.99936 * 269.99753 * 10 7 6 12 12 C 1.46504 * 119.99993 * 89.99857 * 10 7 6 13 13 C 1.50703 * 109.47244 * 94.99898 * 12 10 7 14 14 H 1.07999 * 119.99611 * 359.97438 * 13 12 10 15 15 C 1.37876 * 120.00117 * 180.02562 * 13 12 10 16 16 N 1.31512 * 120.00053 * 359.97438 * 15 13 12 17 17 Si 1.86798 * 120.00088 * 180.02562 * 15 13 12 18 18 H 1.48496 * 109.47291 * 59.99107 * 17 15 13 19 19 H 1.48497 * 109.47399 * 179.97438 * 17 15 13 20 20 H 1.48505 * 109.46907 * 299.99550 * 17 15 13 21 21 C 1.53006 * 109.47164 * 55.00153 * 4 3 2 22 22 H 1.08994 * 110.27711 * 64.29794 * 21 4 3 23 23 C 1.54947 * 110.30761 * 186.39241 * 21 4 3 24 24 C 1.55423 * 100.89093 * 155.28665 * 23 21 4 25 25 C 1.54383 * 102.30621 * 325.98818 * 24 23 21 26 26 O 1.43243 * 107.59061 * 21.28752 * 25 24 23 27 27 H 1.08999 * 109.47559 * 179.97438 * 1 2 3 28 28 H 1.08998 * 109.47097 * 300.00728 * 1 2 3 29 29 H 1.09012 * 109.46760 * 59.99878 * 1 2 3 30 30 H 1.09000 * 109.47261 * 60.00016 * 3 2 1 31 31 H 1.09001 * 109.47178 * 299.99799 * 3 2 1 32 32 H 0.96998 * 119.99979 * 84.99507 * 6 4 3 33 33 H 1.08997 * 109.46937 * 90.00355 * 11 10 7 34 34 H 1.09004 * 109.46724 * 210.00227 * 11 10 7 35 35 H 1.08995 * 109.46883 * 329.99645 * 11 10 7 36 36 H 1.08997 * 109.46923 * 215.00140 * 12 10 7 37 37 H 1.09007 * 109.47045 * 335.00270 * 12 10 7 38 38 H 0.96994 * 120.00319 * 180.02562 * 16 15 13 39 39 H 1.08997 * 111.12503 * 273.27305 * 23 21 4 40 40 H 1.08993 * 111.12746 * 37.44377 * 23 21 4 41 41 H 1.08992 * 110.88215 * 207.75404 * 24 23 21 42 42 H 1.08996 * 110.93421 * 84.24666 * 24 23 21 43 43 H 1.08997 * 109.83466 * 261.77025 * 25 24 23 44 44 H 1.09003 * 109.90326 * 140.84375 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5355 1.1845 0.0006 5 1 3.9786 2.1763 -0.0889 6 7 3.9757 0.5642 1.2527 7 16 4.4454 1.5128 2.5262 8 8 4.7762 0.6262 3.5864 9 8 5.3555 2.4689 2.0002 10 7 3.1126 2.3603 3.0240 11 6 2.8172 3.6705 2.4390 12 6 2.2290 1.7998 4.0494 13 6 2.6274 2.3324 5.4017 14 1 3.4562 3.0193 5.4886 15 6 1.9345 1.9419 6.5279 16 7 0.9256 1.1050 6.4220 17 14 2.4279 2.6026 8.2040 18 1 2.3115 4.0830 8.2063 19 1 1.5323 2.0344 9.2433 20 1 3.8320 2.2161 8.4947 21 6 3.9790 0.3192 -1.1807 22 1 3.7250 0.8063 -2.1221 23 6 5.5033 0.0507 -1.1082 24 6 5.6070 -1.2733 -1.9156 25 6 4.2809 -1.9797 -1.5609 26 8 3.3639 -0.9768 -1.1080 27 1 -0.3634 -1.0276 -0.0005 28 1 -0.3633 0.5139 0.8899 29 1 -0.3633 0.5139 -0.8901 30 1 1.6887 1.8463 0.8900 31 1 1.6887 1.8463 -0.8900 32 1 3.9920 -0.4021 1.3358 33 1 2.1824 3.5422 1.5623 34 1 2.3012 4.2885 3.1740 35 1 3.7481 4.1557 2.1458 36 1 1.1986 2.0841 3.8360 37 1 2.3138 0.7130 4.0475 38 1 0.4379 0.8305 7.2142 39 1 6.0664 0.8507 -1.5889 40 1 5.8286 -0.0919 -0.0778 41 1 6.4615 -1.8638 -1.5852 42 1 5.6660 -1.0735 -2.9854 43 1 4.4509 -2.7097 -0.7695 44 1 3.8783 -2.4777 -2.4429 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000331219467.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:28:55 Heat of formation + Delta-G solvation = -159.395298 kcal Electronic energy + Delta-G solvation = -27848.993685 eV Core-core repulsion = 23928.890960 eV Total energy + Delta-G solvation = -3920.102725 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 322.144 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -39.76208 -37.57483 -36.58289 -35.49480 -35.13477 -34.92489 -32.41392 -32.03988 -29.98235 -28.10695 -27.70328 -25.86911 -25.04259 -23.25653 -22.26373 -21.62788 -20.71106 -19.06367 -17.50577 -16.96079 -16.62564 -16.45668 -16.07589 -16.00577 -15.42086 -15.22768 -15.05082 -14.87478 -14.31458 -13.80640 -13.60421 -13.38043 -13.29833 -12.85360 -12.57183 -12.30150 -12.25581 -12.08886 -11.72856 -11.58791 -11.52078 -11.38242 -11.30807 -11.15020 -11.14215 -11.03863 -10.94952 -10.73501 -10.69473 -10.46800 -10.01981 -9.75428 -9.51993 -9.33074 -9.16484 -8.41362 -8.04952 -6.03352 -4.07431 1.27177 3.35224 3.38906 3.43210 3.50853 3.76248 3.98997 4.17408 4.36647 4.47042 4.57855 4.79708 4.97315 5.03327 5.10399 5.16835 5.26024 5.31772 5.33852 5.44592 5.55507 5.56798 5.61904 5.64327 5.67631 5.70632 5.75485 5.84989 5.91298 6.00632 6.03419 6.17828 6.33066 6.56295 7.09719 7.19661 7.34000 7.43125 7.47853 7.65142 7.93730 8.23678 8.94547 9.57532 11.05125 Molecular weight = 322.14amu Principal moments of inertia in cm(-1) A = 0.018070 B = 0.004407 C = 0.004038 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1549.119812 B = 6352.250268 C = 6932.088349 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.354 6.354 3 C 0.039 3.961 4 C 0.158 3.842 5 H 0.111 0.889 6 N -1.116 6.116 7 S 2.780 3.220 8 O -0.963 6.963 9 O -1.000 7.000 10 N -0.996 5.996 11 C 0.091 3.909 12 C 0.261 3.739 13 C -0.530 4.530 14 H 0.059 0.941 15 C 0.063 3.937 16 N -0.895 5.895 17 Si 0.896 3.104 18 H -0.277 1.277 19 H -0.286 1.286 20 H -0.275 1.275 21 C 0.084 3.916 22 H 0.076 0.924 23 C -0.154 4.154 24 C -0.156 4.156 25 C 0.046 3.954 26 O -0.342 6.342 27 H 0.081 0.919 28 H 0.041 0.959 29 H 0.031 0.969 30 H 0.064 0.936 31 H 0.050 0.950 32 H 0.419 0.581 33 H 0.037 0.963 34 H 0.078 0.922 35 H 0.066 0.934 36 H 0.033 0.967 37 H 0.039 0.961 38 H 0.264 0.736 39 H 0.083 0.917 40 H 0.085 0.915 41 H 0.079 0.921 42 H 0.073 0.927 43 H 0.067 0.933 44 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.990 -1.508 -19.440 19.726 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.272 6.272 3 C -0.040 4.040 4 C 0.050 3.950 5 H 0.128 0.872 6 N -0.875 5.875 7 S 2.787 3.213 8 O -0.947 6.947 9 O -0.984 6.984 10 N -0.839 5.839 11 C -0.055 4.055 12 C 0.139 3.861 13 C -0.569 4.569 14 H 0.077 0.923 15 C -0.140 4.140 16 N -0.534 5.534 17 Si 0.724 3.276 18 H -0.202 1.202 19 H -0.212 1.212 20 H -0.200 1.200 21 C 0.024 3.976 22 H 0.094 0.906 23 C -0.192 4.192 24 C -0.194 4.194 25 C -0.031 4.031 26 O -0.261 6.261 27 H 0.100 0.900 28 H 0.059 0.941 29 H 0.050 0.950 30 H 0.082 0.918 31 H 0.068 0.932 32 H 0.253 0.747 33 H 0.055 0.945 34 H 0.097 0.903 35 H 0.085 0.915 36 H 0.051 0.949 37 H 0.057 0.943 38 H 0.073 0.927 39 H 0.102 0.898 40 H 0.104 0.896 41 H 0.097 0.903 42 H 0.091 0.909 43 H 0.085 0.915 44 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 3.618 -1.570 -18.894 19.301 hybrid contribution -0.298 0.147 0.767 0.836 sum 3.320 -1.423 -18.127 18.484 Atomic orbital electron populations 1.22699 0.82163 1.02341 0.99395 1.88099 1.18284 1.25646 1.95133 1.23138 0.93532 0.86528 1.00769 1.20971 0.92863 0.96750 0.84465 0.87181 1.56134 1.83979 1.20552 1.26851 1.01992 0.73616 0.73192 0.72506 1.93647 1.82753 1.65635 1.52632 1.93518 1.61542 1.62396 1.80930 1.57610 1.46644 1.27886 1.51720 1.21416 1.00872 0.85429 0.97822 1.19011 0.88915 0.94040 0.84157 1.21461 1.15961 1.27811 0.91687 0.92285 1.24921 0.94880 0.94949 0.99206 1.69910 1.20480 1.33123 1.29901 0.86589 0.78696 0.79053 0.83288 1.20226 1.21194 1.20012 1.23072 0.91569 0.86259 0.96678 0.90598 1.23360 0.96167 0.97576 1.02109 1.23133 0.98637 0.96944 1.00655 1.23126 0.88902 0.92059 0.99052 1.88707 1.36805 1.13980 1.86579 0.90046 0.94064 0.95006 0.91776 0.93168 0.74686 0.94467 0.90306 0.91524 0.94917 0.94341 0.92675 0.89827 0.89647 0.90254 0.90863 0.91525 0.91955 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.38 11.01 101.05 1.11 1.50 16 2 O -0.35 -5.17 8.37 -58.04 -0.49 -5.66 16 3 C 0.04 0.51 5.73 37.16 0.21 0.72 16 4 C 0.16 2.02 2.78 -67.93 -0.19 1.83 16 5 H 0.11 1.26 7.50 -51.93 -0.39 0.88 16 6 N -1.12 -17.24 4.29 -4.89 -0.02 -17.26 16 7 S 2.78 54.66 6.08 -107.50 -0.65 54.01 16 8 O -0.96 -23.32 17.11 -57.17 -0.98 -24.30 16 9 O -1.00 -19.99 16.08 -57.17 -0.92 -20.91 16 10 N -1.00 -20.29 2.80 -123.05 -0.34 -20.64 16 11 C 0.09 1.50 10.44 59.85 0.62 2.13 16 12 C 0.26 6.53 5.08 -5.19 -0.03 6.51 16 13 C -0.53 -14.93 9.38 -34.44 -0.32 -15.26 16 14 H 0.06 1.66 7.81 -52.49 -0.41 1.25 16 15 C 0.06 1.79 5.46 -17.82 -0.10 1.69 16 16 N -0.90 -26.29 13.29 55.43 0.74 -25.55 16 17 Si 0.90 21.98 29.54 -169.99 -5.02 16.96 16 18 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 19 H -0.29 -6.88 7.11 56.52 0.40 -6.47 16 20 H -0.27 -6.78 7.11 56.52 0.40 -6.38 16 21 C 0.08 0.93 3.26 -25.70 -0.08 0.85 16 22 H 0.08 0.72 8.14 -51.93 -0.42 0.30 16 23 C -0.15 -1.57 6.51 -24.42 -0.16 -1.73 16 24 C -0.16 -1.33 7.02 -24.72 -0.17 -1.50 16 25 C 0.05 0.46 7.80 37.88 0.30 0.76 16 26 O -0.34 -4.36 8.44 -58.04 -0.49 -4.85 16 27 H 0.08 0.93 8.14 -51.93 -0.42 0.51 16 28 H 0.04 0.54 8.14 -51.93 -0.42 0.11 16 29 H 0.03 0.33 8.14 -51.92 -0.42 -0.09 16 30 H 0.06 0.90 5.64 -51.93 -0.29 0.61 16 31 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 32 H 0.42 6.40 8.50 -34.47 -0.29 6.10 16 33 H 0.04 0.49 6.38 -51.93 -0.33 0.16 16 34 H 0.08 1.34 8.07 -51.93 -0.42 0.92 16 35 H 0.07 1.03 7.02 -51.93 -0.36 0.66 16 36 H 0.03 0.83 8.11 -51.93 -0.42 0.41 16 37 H 0.04 1.05 7.61 -51.93 -0.40 0.65 16 38 H 0.26 7.34 8.31 -40.82 -0.34 7.01 16 39 H 0.08 0.74 8.14 -51.93 -0.42 0.31 16 40 H 0.08 1.00 7.06 -51.93 -0.37 0.63 16 41 H 0.08 0.61 8.14 -51.93 -0.42 0.19 16 42 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 43 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 44 H 0.06 0.56 8.14 -51.93 -0.42 0.13 16 LS Contribution 365.22 15.07 5.50 5.50 Total: -1.00 -34.53 365.22 -8.53 -43.05 By element: Atomic # 1 Polarization: 9.21 SS G_CDS: -7.05 Total: 2.16 kcal Atomic # 6 Polarization: -3.71 SS G_CDS: 1.19 Total: -2.52 kcal Atomic # 7 Polarization: -63.82 SS G_CDS: 0.37 Total: -63.45 kcal Atomic # 8 Polarization: -52.84 SS G_CDS: -2.87 Total: -55.72 kcal Atomic # 14 Polarization: 21.98 SS G_CDS: -5.02 Total: 16.96 kcal Atomic # 16 Polarization: 54.66 SS G_CDS: -0.65 Total: 54.01 kcal Total LS contribution 5.50 Total: 5.50 kcal Total: -34.53 -8.53 -43.05 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000331219467.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -116.341 kcal (2) G-P(sol) polarization free energy of solvation -34.529 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -150.870 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.525 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.055 kcal (6) G-S(sol) free energy of system = (1) + (5) -159.395 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds