Wall clock time and date at job start Fri Apr 10 2020 18:28:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.42892 * 114.00247 * 2 1 4 4 C 1.52997 * 109.47178 * 179.97438 * 3 2 1 5 5 H 1.09001 * 109.47375 * 175.00187 * 4 3 2 6 6 N 1.46504 * 109.47417 * 295.00239 * 4 3 2 7 7 S 1.65600 * 119.99584 * 265.00154 * 6 4 3 8 8 O 1.42103 * 106.40033 * 178.53723 * 7 6 4 9 9 O 1.42101 * 106.40350 * 311.45144 * 7 6 4 10 10 N 1.65599 * 107.22013 * 64.99557 * 7 6 4 11 11 C 1.46498 * 119.99936 * 269.99753 * 10 7 6 12 12 C 1.46504 * 119.99993 * 89.99857 * 10 7 6 13 13 C 1.50703 * 109.47244 * 94.99898 * 12 10 7 14 14 H 1.07999 * 119.99611 * 359.97438 * 13 12 10 15 15 C 1.37876 * 120.00117 * 180.02562 * 13 12 10 16 16 N 1.31512 * 120.00053 * 359.97438 * 15 13 12 17 17 Si 1.86798 * 120.00088 * 180.02562 * 15 13 12 18 18 H 1.48496 * 109.47291 * 59.99107 * 17 15 13 19 19 H 1.48497 * 109.47399 * 179.97438 * 17 15 13 20 20 H 1.48505 * 109.46907 * 299.99550 * 17 15 13 21 21 C 1.53006 * 109.47164 * 55.00153 * 4 3 2 22 22 H 1.08994 * 110.27711 * 64.29794 * 21 4 3 23 23 C 1.54947 * 110.30761 * 186.39241 * 21 4 3 24 24 C 1.55423 * 100.89093 * 155.28665 * 23 21 4 25 25 C 1.54383 * 102.30621 * 325.98818 * 24 23 21 26 26 O 1.43243 * 107.59061 * 21.28752 * 25 24 23 27 27 H 1.08999 * 109.47559 * 179.97438 * 1 2 3 28 28 H 1.08998 * 109.47097 * 300.00728 * 1 2 3 29 29 H 1.09012 * 109.46760 * 59.99878 * 1 2 3 30 30 H 1.09000 * 109.47261 * 60.00016 * 3 2 1 31 31 H 1.09001 * 109.47178 * 299.99799 * 3 2 1 32 32 H 0.96998 * 119.99979 * 84.99507 * 6 4 3 33 33 H 1.08997 * 109.46937 * 90.00355 * 11 10 7 34 34 H 1.09004 * 109.46724 * 210.00227 * 11 10 7 35 35 H 1.08995 * 109.46883 * 329.99645 * 11 10 7 36 36 H 1.08997 * 109.46923 * 215.00140 * 12 10 7 37 37 H 1.09007 * 109.47045 * 335.00270 * 12 10 7 38 38 H 0.96994 * 120.00319 * 180.02562 * 16 15 13 39 39 H 1.08997 * 111.12503 * 273.27305 * 23 21 4 40 40 H 1.08993 * 111.12746 * 37.44377 * 23 21 4 41 41 H 1.08992 * 110.88215 * 207.75404 * 24 23 21 42 42 H 1.08996 * 110.93421 * 84.24666 * 24 23 21 43 43 H 1.08997 * 109.83466 * 261.77025 * 25 24 23 44 44 H 1.09003 * 109.90326 * 140.84375 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5355 1.1845 0.0006 5 1 3.9786 2.1763 -0.0889 6 7 3.9757 0.5642 1.2527 7 16 4.4454 1.5128 2.5262 8 8 4.7762 0.6262 3.5864 9 8 5.3555 2.4689 2.0002 10 7 3.1126 2.3603 3.0240 11 6 2.8172 3.6705 2.4390 12 6 2.2290 1.7998 4.0494 13 6 2.6274 2.3324 5.4017 14 1 3.4562 3.0193 5.4886 15 6 1.9345 1.9419 6.5279 16 7 0.9256 1.1050 6.4220 17 14 2.4279 2.6026 8.2040 18 1 2.3115 4.0830 8.2063 19 1 1.5323 2.0344 9.2433 20 1 3.8320 2.2161 8.4947 21 6 3.9790 0.3192 -1.1807 22 1 3.7250 0.8063 -2.1221 23 6 5.5033 0.0507 -1.1082 24 6 5.6070 -1.2733 -1.9156 25 6 4.2809 -1.9797 -1.5609 26 8 3.3639 -0.9768 -1.1080 27 1 -0.3634 -1.0276 -0.0005 28 1 -0.3633 0.5139 0.8899 29 1 -0.3633 0.5139 -0.8901 30 1 1.6887 1.8463 0.8900 31 1 1.6887 1.8463 -0.8900 32 1 3.9920 -0.4021 1.3358 33 1 2.1824 3.5422 1.5623 34 1 2.3012 4.2885 3.1740 35 1 3.7481 4.1557 2.1458 36 1 1.1986 2.0841 3.8360 37 1 2.3138 0.7130 4.0475 38 1 0.4379 0.8305 7.2142 39 1 6.0664 0.8507 -1.5889 40 1 5.8286 -0.0919 -0.0778 41 1 6.4615 -1.8638 -1.5852 42 1 5.6660 -1.0735 -2.9854 43 1 4.4509 -2.7097 -0.7695 44 1 3.8783 -2.4777 -2.4429 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000331219467.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:28:54 Heat of formation + Delta-G solvation = -185.570785 kcal Electronic energy + Delta-G solvation = -27850.128739 eV Core-core repulsion = 23928.890960 eV Total energy + Delta-G solvation = -3921.237779 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 322.144 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -40.63989 -38.59276 -38.24086 -37.20855 -36.83910 -36.05631 -34.50030 -32.82512 -31.05071 -29.69131 -28.91068 -26.90286 -26.70545 -24.21749 -24.15044 -22.36965 -21.69195 -20.47729 -19.08387 -18.42974 -18.36466 -17.78392 -17.21550 -17.08052 -16.92186 -16.41210 -16.17046 -16.03915 -15.81530 -15.13158 -14.96503 -14.70443 -14.27437 -14.09284 -13.91670 -13.80145 -13.63742 -13.36335 -13.20882 -13.12133 -12.99858 -12.91616 -12.73119 -12.48267 -12.46266 -12.35243 -12.18779 -12.06658 -11.95523 -11.79165 -11.75310 -11.59821 -10.60215 -10.51662 -10.35637 -10.19455 -9.76935 -8.19542 -6.31802 -0.29596 1.38863 1.42698 1.49691 2.03251 2.40584 2.64921 2.91909 3.05406 3.11251 3.48212 3.53621 3.75947 4.05319 4.09435 4.16589 4.20177 4.34814 4.37754 4.44120 4.54781 4.58085 4.64943 4.66475 4.78810 4.82540 4.91671 4.93685 4.95917 5.00014 5.08674 5.12582 5.13968 5.21641 5.34668 5.47046 5.70628 5.87224 6.09623 6.16115 6.28690 6.45843 6.76588 7.37042 8.87741 Molecular weight = 322.14amu Principal moments of inertia in cm(-1) A = 0.018070 B = 0.004407 C = 0.004038 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1549.119812 B = 6352.250268 C = 6932.088349 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.375 6.375 3 C 0.036 3.964 4 C 0.148 3.852 5 H 0.127 0.873 6 N -1.104 6.104 7 S 2.797 3.203 8 O -1.015 7.015 9 O -1.003 7.003 10 N -1.001 6.001 11 C 0.084 3.916 12 C 0.280 3.720 13 C -0.550 4.550 14 H 0.053 0.947 15 C 0.012 3.988 16 N -0.924 5.924 17 Si 0.956 3.044 18 H -0.262 1.262 19 H -0.277 1.277 20 H -0.278 1.278 21 C 0.084 3.916 22 H 0.102 0.898 23 C -0.159 4.159 24 C -0.147 4.147 25 C 0.039 3.961 26 O -0.367 6.367 27 H 0.085 0.915 28 H 0.027 0.973 29 H 0.054 0.946 30 H 0.049 0.951 31 H 0.082 0.918 32 H 0.420 0.580 33 H 0.073 0.927 34 H 0.070 0.930 35 H 0.079 0.921 36 H 0.026 0.974 37 H 0.010 0.990 38 H 0.267 0.733 39 H 0.100 0.900 40 H 0.064 0.936 41 H 0.086 0.914 42 H 0.093 0.907 43 H 0.058 0.942 44 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.306 -0.533 -21.230 21.493 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.294 6.294 3 C -0.043 4.043 4 C 0.041 3.959 5 H 0.144 0.856 6 N -0.865 5.865 7 S 2.805 3.195 8 O -0.999 6.999 9 O -0.986 6.986 10 N -0.843 5.843 11 C -0.061 4.061 12 C 0.156 3.844 13 C -0.589 4.589 14 H 0.071 0.929 15 C -0.187 4.187 16 N -0.564 5.564 17 Si 0.780 3.220 18 H -0.187 1.187 19 H -0.202 1.202 20 H -0.204 1.204 21 C 0.025 3.975 22 H 0.120 0.880 23 C -0.197 4.197 24 C -0.184 4.184 25 C -0.038 4.038 26 O -0.286 6.286 27 H 0.104 0.896 28 H 0.046 0.954 29 H 0.073 0.927 30 H 0.067 0.933 31 H 0.100 0.900 32 H 0.255 0.745 33 H 0.091 0.909 34 H 0.089 0.911 35 H 0.098 0.902 36 H 0.044 0.956 37 H 0.028 0.972 38 H 0.076 0.924 39 H 0.119 0.881 40 H 0.082 0.918 41 H 0.104 0.896 42 H 0.111 0.889 43 H 0.076 0.924 44 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 3.937 -0.564 -20.706 21.084 hybrid contribution -0.404 -0.174 1.209 1.286 sum 3.533 -0.738 -19.497 19.828 Atomic orbital electron populations 1.22775 0.81354 1.02846 0.99801 1.88072 1.19307 1.26715 1.95277 1.23231 0.93418 0.86133 1.01503 1.21372 0.93115 0.97842 0.83611 0.85552 1.55740 1.83844 1.20090 1.26837 1.01259 0.73335 0.72671 0.72272 1.93571 1.83762 1.67017 1.55545 1.93505 1.61625 1.62626 1.80841 1.57468 1.45835 1.29582 1.51438 1.21670 1.02239 0.83522 0.98712 1.18489 0.89189 0.92331 0.84411 1.21825 1.15808 1.27864 0.93452 0.92913 1.25747 0.94877 0.95199 1.02908 1.70010 1.21337 1.34043 1.30993 0.85648 0.78068 0.79237 0.78999 1.18671 1.20184 1.20376 1.23176 0.91941 0.85730 0.96619 0.88003 1.23394 0.95766 0.99113 1.01426 1.23109 0.97921 0.95827 1.01552 1.23256 0.89581 0.91710 0.99254 1.88681 1.37968 1.14922 1.86996 0.89638 0.95441 0.92710 0.93312 0.90012 0.74546 0.90895 0.91105 0.90206 0.95604 0.97238 0.92429 0.88118 0.91751 0.89562 0.88891 0.92374 0.90709 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.69 11.01 113.37 1.25 1.94 16 2 O -0.38 -10.59 8.37 -127.17 -1.06 -11.65 16 3 C 0.04 0.85 5.73 71.98 0.41 1.27 16 4 C 0.15 3.50 2.78 44.99 0.12 3.63 16 5 H 0.13 2.56 7.50 -2.39 -0.02 2.54 16 6 N -1.10 -33.82 4.29 -169.37 -0.73 -34.55 16 7 S 2.80 110.70 6.08 -56.49 -0.34 110.35 16 8 O -1.01 -50.81 17.11 -128.00 -2.19 -53.00 16 9 O -1.00 -39.18 16.08 -128.00 -2.06 -41.24 16 10 N -1.00 -41.00 2.80 -543.22 -1.52 -42.52 16 11 C 0.08 2.66 10.44 127.77 1.33 3.99 16 12 C 0.28 14.39 5.08 85.63 0.43 14.83 16 13 C -0.55 -31.57 9.38 25.60 0.24 -31.33 16 14 H 0.05 3.01 7.81 -2.91 -0.02 2.99 16 15 C 0.01 0.70 5.46 84.65 0.46 1.16 16 16 N -0.92 -55.10 13.29 21.45 0.28 -54.81 16 17 Si 0.96 45.15 29.54 68.60 2.03 47.18 16 18 H -0.26 -11.68 7.11 99.48 0.71 -10.98 16 19 H -0.28 -12.56 7.11 99.48 0.71 -11.85 16 20 H -0.28 -13.22 7.11 99.48 0.71 -12.51 16 21 C 0.08 1.68 3.26 31.26 0.10 1.78 16 22 H 0.10 1.54 8.14 -2.39 -0.02 1.52 16 23 C -0.16 -2.91 6.51 32.09 0.21 -2.70 16 24 C -0.15 -2.15 7.02 31.90 0.22 -1.93 16 25 C 0.04 0.72 7.80 72.45 0.56 1.29 16 26 O -0.37 -8.79 8.44 -127.17 -1.07 -9.86 16 27 H 0.09 1.91 8.14 -2.39 -0.02 1.89 16 28 H 0.03 0.71 8.14 -2.39 -0.02 0.69 16 29 H 0.05 1.03 8.14 -2.38 -0.02 1.01 16 30 H 0.05 1.31 5.64 -2.39 -0.01 1.30 16 31 H 0.08 1.44 8.14 -2.39 -0.02 1.42 16 32 H 0.42 13.06 8.50 -96.75 -0.82 12.24 16 33 H 0.07 1.78 6.38 -2.39 -0.02 1.77 16 34 H 0.07 2.36 8.07 -2.38 -0.02 2.34 16 35 H 0.08 2.32 7.02 -2.39 -0.02 2.30 16 36 H 0.03 1.35 8.11 -2.39 -0.02 1.33 16 37 H 0.01 0.55 7.61 -2.38 -0.02 0.53 16 38 H 0.27 14.99 8.31 -92.71 -0.77 14.22 16 39 H 0.10 1.48 8.14 -2.39 -0.02 1.46 16 40 H 0.06 1.45 7.06 -2.39 -0.02 1.43 16 41 H 0.09 1.15 8.14 -2.39 -0.02 1.13 16 42 H 0.09 1.02 8.14 -2.39 -0.02 1.00 16 43 H 0.06 1.15 8.14 -2.39 -0.02 1.13 16 44 H 0.07 1.19 8.14 -2.39 -0.02 1.17 16 Total: -1.00 -74.95 365.22 -1.13 -76.09 By element: Atomic # 1 Polarization: 19.91 SS G_CDS: 0.17 Total: 20.08 kcal Atomic # 6 Polarization: -11.42 SS G_CDS: 5.36 Total: -6.07 kcal Atomic # 7 Polarization: -129.92 SS G_CDS: -1.96 Total: -131.88 kcal Atomic # 8 Polarization: -109.37 SS G_CDS: -6.39 Total: -115.75 kcal Atomic # 14 Polarization: 45.15 SS G_CDS: 2.03 Total: 47.18 kcal Atomic # 16 Polarization: 110.70 SS G_CDS: -0.34 Total: 110.35 kcal Total: -74.95 -1.13 -76.09 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000331219467.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -109.482 kcal (2) G-P(sol) polarization free energy of solvation -74.954 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -184.436 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.135 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.089 kcal (6) G-S(sol) free energy of system = (1) + (5) -185.571 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds