Wall clock time and date at job start Fri Apr 10 2020 18:29:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.42898 * 114.00593 * 2 1 4 4 C 1.52994 * 109.47279 * 179.97438 * 3 2 1 5 5 H 1.09006 * 109.46849 * 185.00189 * 4 3 2 6 6 N 1.46500 * 109.47359 * 65.00273 * 4 3 2 7 7 S 1.65595 * 120.00246 * 93.84703 * 6 4 3 8 8 O 1.42106 * 106.40061 * 309.48358 * 7 6 4 9 9 O 1.42093 * 106.40323 * 176.56378 * 7 6 4 10 10 N 1.65597 * 107.21934 * 63.02232 * 7 6 4 11 11 C 1.46503 * 120.00316 * 272.86088 * 10 7 6 12 12 C 1.46503 * 119.99833 * 92.85500 * 10 7 6 13 13 C 1.50701 * 109.47295 * 244.87838 * 12 10 7 14 14 H 1.07997 * 119.99541 * 354.91299 * 13 12 10 15 15 C 1.37875 * 119.99855 * 174.91264 * 13 12 10 16 16 N 1.31513 * 119.99858 * 0.02562 * 15 13 12 17 17 Si 1.86802 * 119.99944 * 180.02562 * 15 13 12 18 18 H 1.48501 * 109.47019 * 270.00049 * 17 15 13 19 19 H 1.48504 * 109.46998 * 29.99702 * 17 15 13 20 20 H 1.48493 * 109.47166 * 149.99552 * 17 15 13 21 21 C 1.52998 * 109.47557 * 304.99832 * 4 3 2 22 22 H 1.09007 * 110.33170 * 300.30165 * 21 4 3 23 23 C 1.54474 * 110.37512 * 178.04913 * 21 4 3 24 24 C 1.54517 * 104.06220 * 217.19110 * 23 21 4 25 25 C 1.54483 * 104.06060 * 359.97438 * 24 23 21 26 26 O 1.44418 * 104.80461 * 23.97856 * 25 24 23 27 27 H 1.09000 * 109.47053 * 300.00392 * 1 2 3 28 28 H 1.09000 * 109.47128 * 59.99885 * 1 2 3 29 29 H 1.09003 * 109.47504 * 179.97438 * 1 2 3 30 30 H 1.09005 * 109.46821 * 59.99835 * 3 2 1 31 31 H 1.09001 * 109.46857 * 300.00205 * 3 2 1 32 32 H 0.96997 * 119.99240 * 273.85157 * 6 4 3 33 33 H 1.08997 * 109.47101 * 269.99876 * 11 10 7 34 34 H 1.09004 * 109.46743 * 29.99620 * 11 10 7 35 35 H 1.08991 * 109.47266 * 149.99593 * 11 10 7 36 36 H 1.09002 * 109.46906 * 124.88214 * 12 10 7 37 37 H 1.08998 * 109.46996 * 4.88565 * 12 10 7 38 38 H 0.97000 * 119.99677 * 180.02562 * 16 15 13 39 39 H 1.08995 * 110.51068 * 335.82894 * 23 21 4 40 40 H 1.08997 * 110.51638 * 98.41065 * 23 21 4 41 41 H 1.08994 * 110.51002 * 118.64049 * 24 23 21 42 42 H 1.08996 * 110.51043 * 241.35603 * 24 23 21 43 43 H 1.08997 * 110.36893 * 142.81094 * 25 24 23 44 44 H 1.08999 * 110.37231 * 265.03501 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5355 1.1845 0.0006 5 1 3.9785 2.1764 0.0903 6 7 3.9767 0.5638 -1.2509 7 16 4.4203 1.5120 -2.5340 8 8 3.3673 2.4469 -2.7250 9 8 4.8677 0.6267 -3.5514 10 7 5.7436 2.3883 -2.0615 11 6 5.5663 3.6712 -1.3767 12 6 7.0917 1.8806 -2.3284 13 6 7.7865 1.5896 -1.0231 14 1 7.3074 1.8417 -0.0886 15 6 9.0335 1.0016 -1.0221 16 7 9.6169 0.6951 -2.1602 17 14 9.8944 0.6402 0.5959 18 1 10.7195 1.8104 0.9897 19 1 8.8803 0.3732 1.6474 20 1 10.7677 -0.5502 0.4369 21 6 3.9781 0.3196 1.1826 22 1 3.6521 0.7664 2.1219 23 6 5.5127 0.1433 1.1751 24 6 5.7258 -1.3120 1.6485 25 6 4.2946 -1.8425 1.8867 26 8 3.4520 -1.0188 1.0518 27 1 -0.3633 0.5139 0.8900 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3634 -1.0277 -0.0005 30 1 1.6887 1.8463 0.8900 31 1 1.6887 1.8463 -0.8900 32 1 4.0089 -0.4026 -1.3279 33 1 5.5253 4.4736 -2.1132 34 1 4.6374 3.6533 -0.8066 35 1 6.4042 3.8410 -0.7007 36 1 7.6585 2.6286 -2.8827 37 1 7.0254 0.9654 -2.9167 38 1 10.4941 0.2811 -2.1594 39 1 5.9078 0.2790 0.1683 40 1 5.9812 0.8443 1.8659 41 1 6.2261 -1.8956 0.8759 42 1 6.2992 -1.3320 2.5752 43 1 4.2222 -2.8874 1.5852 44 1 4.0181 -1.7308 2.9351 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000331219469.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:29:02 Heat of formation + Delta-G solvation = -162.704155 kcal Electronic energy + Delta-G solvation = -28382.229807 eV Core-core repulsion = 24461.983600 eV Total energy + Delta-G solvation = -3920.246207 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 322.144 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -39.51501 -37.58366 -36.62022 -35.59101 -35.21168 -34.82996 -32.50187 -31.61947 -29.80131 -27.93094 -27.70702 -25.91648 -25.30769 -23.19360 -22.22280 -21.19955 -20.57103 -18.95953 -17.37862 -16.81709 -16.62707 -16.52006 -16.00435 -15.86310 -15.39379 -15.08706 -15.04841 -14.89854 -14.44749 -13.74562 -13.48501 -13.28422 -13.16928 -12.76240 -12.56584 -12.42143 -12.21320 -12.09503 -11.67335 -11.49123 -11.38361 -11.27130 -11.22971 -11.15340 -11.07321 -10.95252 -10.79813 -10.70688 -10.61717 -10.23790 -10.05812 -9.71911 -9.47149 -9.44459 -9.10345 -8.55447 -8.04413 -6.13815 -4.19764 1.27647 3.20935 3.28187 3.29669 3.48089 3.89713 4.03813 4.24800 4.32642 4.68799 4.95391 4.98814 5.12054 5.18650 5.21800 5.26768 5.32634 5.34136 5.41638 5.45539 5.50997 5.60304 5.72086 5.73711 5.84694 5.86796 5.96570 6.06085 6.15063 6.23571 6.35879 6.36499 6.59442 6.76895 7.11502 7.26720 7.35518 7.37561 7.49768 7.64659 7.82958 8.14092 8.84192 9.45422 10.94536 Molecular weight = 322.14amu Principal moments of inertia in cm(-1) A = 0.012669 B = 0.006570 C = 0.004863 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2209.569007 B = 4260.770037 C = 5756.273395 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.357 6.357 3 C 0.042 3.958 4 C 0.170 3.830 5 H 0.105 0.895 6 N -1.109 6.109 7 S 2.782 3.218 8 O -1.000 7.000 9 O -0.979 6.979 10 N -0.996 5.996 11 C 0.103 3.897 12 C 0.244 3.756 13 C -0.534 4.534 14 H 0.067 0.933 15 C 0.065 3.935 16 N -0.888 5.888 17 Si 0.889 3.111 18 H -0.281 1.281 19 H -0.270 1.270 20 H -0.287 1.287 21 C 0.076 3.924 22 H 0.069 0.931 23 C -0.161 4.161 24 C -0.153 4.153 25 C 0.042 3.958 26 O -0.340 6.340 27 H 0.034 0.966 28 H 0.036 0.964 29 H 0.081 0.919 30 H 0.051 0.949 31 H 0.064 0.936 32 H 0.422 0.578 33 H 0.045 0.955 34 H 0.048 0.952 35 H 0.080 0.920 36 H 0.028 0.972 37 H 0.057 0.943 38 H 0.264 0.736 39 H 0.112 0.888 40 H 0.071 0.929 41 H 0.076 0.924 42 H 0.067 0.933 43 H 0.085 0.915 44 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.642 0.248 9.070 15.561 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.275 6.275 3 C -0.037 4.037 4 C 0.061 3.939 5 H 0.122 0.878 6 N -0.868 5.868 7 S 2.790 3.210 8 O -0.983 6.983 9 O -0.963 6.963 10 N -0.839 5.839 11 C -0.044 4.044 12 C 0.122 3.878 13 C -0.573 4.573 14 H 0.085 0.915 15 C -0.139 4.139 16 N -0.526 5.526 17 Si 0.717 3.283 18 H -0.208 1.208 19 H -0.195 1.195 20 H -0.213 1.213 21 C 0.017 3.983 22 H 0.086 0.914 23 C -0.198 4.198 24 C -0.191 4.191 25 C -0.035 4.035 26 O -0.258 6.258 27 H 0.052 0.948 28 H 0.054 0.946 29 H 0.100 0.900 30 H 0.069 0.931 31 H 0.082 0.918 32 H 0.257 0.743 33 H 0.064 0.936 34 H 0.066 0.934 35 H 0.098 0.902 36 H 0.046 0.954 37 H 0.075 0.925 38 H 0.074 0.926 39 H 0.130 0.870 40 H 0.090 0.910 41 H 0.095 0.905 42 H 0.086 0.914 43 H 0.104 0.896 44 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -12.974 0.169 7.999 15.243 hybrid contribution 0.896 -0.333 1.519 1.795 sum -12.078 -0.165 9.519 15.379 Atomic orbital electron populations 1.22692 0.82485 1.02210 0.99281 1.88111 1.18047 1.26204 1.95167 1.23129 0.93849 0.85929 1.00816 1.20840 0.92214 0.96365 0.84457 0.87764 1.55869 1.82412 1.20672 1.27878 1.01859 0.72863 0.72973 0.73295 1.93537 1.55825 1.63606 1.85374 1.93596 1.81839 1.65815 1.55053 1.57649 1.22358 1.30177 1.73739 1.21294 1.01023 0.85166 0.96867 1.19219 0.75828 0.95615 0.97120 1.21457 1.02133 1.40806 0.92922 0.91503 1.24948 0.97283 0.95428 0.96191 1.69942 1.15813 1.41648 1.25178 0.86641 0.79776 0.77912 0.83968 1.20754 1.19493 1.21254 1.23115 0.93461 0.85486 0.96251 0.91358 1.23222 0.94620 0.96191 1.05798 1.22886 0.97239 0.97115 1.01827 1.23375 0.89554 0.96017 0.94567 1.89299 1.52490 1.16908 1.67117 0.94783 0.94582 0.90049 0.93076 0.91754 0.74339 0.93623 0.93385 0.90177 0.95364 0.92526 0.92591 0.86962 0.91012 0.90501 0.91416 0.89646 0.93188 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.33 11.01 101.05 1.11 1.45 16 2 O -0.36 -5.10 8.57 -57.21 -0.49 -5.59 16 3 C 0.04 0.56 5.77 37.15 0.21 0.77 16 4 C 0.17 2.42 2.58 -67.93 -0.17 2.24 16 5 H 0.10 1.35 5.72 -51.93 -0.30 1.05 16 6 N -1.11 -18.44 4.47 -4.89 -0.02 -18.46 16 7 S 2.78 54.06 5.99 -107.50 -0.64 53.41 16 8 O -1.00 -19.88 16.44 -57.17 -0.94 -20.82 16 9 O -0.98 -22.68 16.59 -57.17 -0.95 -23.63 16 10 N -1.00 -19.62 3.34 -123.05 -0.41 -20.04 16 11 C 0.10 1.67 9.83 59.85 0.59 2.25 16 12 C 0.24 5.86 5.62 -5.19 -0.03 5.83 16 13 C -0.53 -13.02 7.64 -34.44 -0.26 -13.29 16 14 H 0.07 1.52 6.62 -52.49 -0.35 1.17 16 15 C 0.06 1.68 5.46 -17.82 -0.10 1.58 16 16 N -0.89 -24.77 13.29 55.43 0.74 -24.04 16 17 Si 0.89 19.78 29.54 -169.99 -5.02 14.76 16 18 H -0.28 -6.27 7.11 56.52 0.40 -5.87 16 19 H -0.27 -5.70 7.11 56.52 0.40 -5.30 16 20 H -0.29 -6.50 7.11 56.52 0.40 -6.10 16 21 C 0.08 1.05 3.05 -25.96 -0.08 0.97 16 22 H 0.07 0.82 8.14 -51.92 -0.42 0.40 16 23 C -0.16 -2.46 6.28 -25.16 -0.16 -2.62 16 24 C -0.15 -2.16 7.09 -25.16 -0.18 -2.33 16 25 C 0.04 0.53 7.63 37.94 0.29 0.82 16 26 O -0.34 -5.02 8.81 -57.21 -0.50 -5.52 16 27 H 0.03 0.32 8.14 -51.93 -0.42 -0.10 16 28 H 0.04 0.38 8.14 -51.93 -0.42 -0.05 16 29 H 0.08 0.79 8.14 -51.93 -0.42 0.37 16 30 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 31 H 0.06 0.92 7.46 -51.93 -0.39 0.53 16 32 H 0.42 7.07 8.33 -34.47 -0.29 6.78 16 33 H 0.05 0.70 8.14 -51.93 -0.42 0.27 16 34 H 0.05 0.65 5.97 -51.93 -0.31 0.34 16 35 H 0.08 1.29 7.30 -51.93 -0.38 0.91 16 36 H 0.03 0.72 8.14 -51.93 -0.42 0.30 16 37 H 0.06 1.52 6.78 -51.93 -0.35 1.16 16 38 H 0.26 7.03 8.31 -40.82 -0.34 6.69 16 39 H 0.11 2.04 5.34 -51.93 -0.28 1.76 16 40 H 0.07 1.06 8.14 -51.93 -0.42 0.64 16 41 H 0.08 1.16 8.14 -51.93 -0.42 0.74 16 42 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 43 H 0.09 0.99 8.14 -51.93 -0.42 0.57 16 44 H 0.05 0.56 8.14 -51.93 -0.42 0.13 16 LS Contribution 359.81 15.07 5.42 5.42 Total: -1.00 -31.42 359.81 -8.44 -39.86 By element: Atomic # 1 Polarization: 13.82 SS G_CDS: -6.85 Total: 6.98 kcal Atomic # 6 Polarization: -3.55 SS G_CDS: 1.22 Total: -2.32 kcal Atomic # 7 Polarization: -62.83 SS G_CDS: 0.30 Total: -62.53 kcal Atomic # 8 Polarization: -52.69 SS G_CDS: -2.88 Total: -55.57 kcal Atomic # 14 Polarization: 19.78 SS G_CDS: -5.02 Total: 14.76 kcal Atomic # 16 Polarization: 54.06 SS G_CDS: -0.64 Total: 53.41 kcal Total LS contribution 5.42 Total: 5.42 kcal Total: -31.42 -8.44 -39.86 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000331219469.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -122.848 kcal (2) G-P(sol) polarization free energy of solvation -31.415 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -154.263 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.441 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.856 kcal (6) G-S(sol) free energy of system = (1) + (5) -162.704 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds