Wall clock time and date at job start Fri Apr 10 2020 18:29:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42894 * 114.00161 * 2 1 4 4 C 1.53004 * 109.46966 * 180.02562 * 3 2 1 5 5 H 1.09008 * 109.46804 * 184.99901 * 4 3 2 6 6 N 1.46496 * 109.47095 * 65.00257 * 4 3 2 7 7 S 1.65598 * 120.00105 * 145.00257 * 6 4 3 8 8 O 1.42101 * 106.40397 * 178.53756 * 7 6 4 9 9 O 1.42104 * 106.40066 * 311.45365 * 7 6 4 10 10 N 1.65598 * 107.22228 * 64.99172 * 7 6 4 11 11 C 1.46501 * 120.00207 * 270.00409 * 10 7 6 12 12 C 1.46506 * 119.99675 * 90.00053 * 10 7 6 13 13 C 1.50703 * 109.46969 * 95.00382 * 12 10 7 14 14 H 1.07995 * 119.99662 * 359.97438 * 13 12 10 15 15 C 1.37874 * 119.99557 * 180.02562 * 13 12 10 16 16 N 1.31509 * 120.00243 * 359.97438 * 15 13 12 17 17 Si 1.86806 * 119.99658 * 179.97438 * 15 13 12 18 18 H 1.48497 * 109.47140 * 0.02562 * 17 15 13 19 19 H 1.48502 * 109.46952 * 119.99750 * 17 15 13 20 20 H 1.48501 * 109.47118 * 240.00125 * 17 15 13 21 21 C 1.52997 * 109.47248 * 304.99601 * 4 3 2 22 22 H 1.08999 * 110.42032 * 172.68993 * 21 4 3 23 23 C 1.54477 * 110.37308 * 295.00440 * 21 4 3 24 24 C 1.54507 * 104.06510 * 142.80822 * 23 21 4 25 25 C 1.54483 * 104.06211 * 359.97438 * 24 23 21 26 26 O 1.44428 * 104.89902 * 335.96812 * 25 24 23 27 27 H 1.08996 * 109.47118 * 59.99733 * 1 2 3 28 28 H 1.08996 * 109.46996 * 180.02562 * 1 2 3 29 29 H 1.09002 * 109.46616 * 300.00123 * 1 2 3 30 30 H 1.09000 * 109.47375 * 60.00182 * 3 2 1 31 31 H 1.08999 * 109.47125 * 300.00158 * 3 2 1 32 32 H 0.96998 * 119.99939 * 324.98897 * 6 4 3 33 33 H 1.08999 * 109.47023 * 89.99660 * 11 10 7 34 34 H 1.08998 * 109.46783 * 209.99494 * 11 10 7 35 35 H 1.08999 * 109.46891 * 329.99449 * 11 10 7 36 36 H 1.09000 * 109.47209 * 215.00335 * 12 10 7 37 37 H 1.08992 * 109.47110 * 335.00121 * 12 10 7 38 38 H 0.97003 * 119.99992 * 180.02562 * 16 15 13 39 39 H 1.09000 * 110.51486 * 24.16264 * 23 21 4 40 40 H 1.09000 * 110.62726 * 261.50882 * 23 21 4 41 41 H 1.09005 * 110.51421 * 241.35469 * 24 23 21 42 42 H 1.09001 * 110.51335 * 118.64380 * 24 23 21 43 43 H 1.09002 * 110.37322 * 94.85326 * 25 24 23 44 44 H 1.08999 * 110.37312 * 217.08002 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5355 1.1845 -0.0006 5 1 3.9786 2.1764 0.0889 6 7 3.9757 0.5643 -1.2527 7 16 5.4006 1.0343 -1.9534 8 8 5.5586 0.2343 -3.1172 9 8 5.3835 2.4550 -1.9834 10 7 6.6207 0.6031 -0.9202 11 6 7.0715 1.5395 0.1123 12 6 7.2493 -0.7149 -1.0387 13 6 8.4914 -0.6048 -1.8850 14 1 8.7830 0.3511 -2.2940 15 6 9.2546 -1.7248 -2.1379 16 7 8.8991 -2.8890 -1.6402 17 14 10.7939 -1.5885 -3.1876 18 1 10.9731 -0.1801 -3.6228 19 1 11.9740 -2.0145 -2.3932 20 1 10.6585 -2.4624 -4.3805 21 6 3.9790 0.3193 1.1807 22 1 5.0483 0.1158 1.1227 23 6 3.6357 1.0157 2.5161 24 6 3.2112 -0.1432 3.4456 25 6 3.3476 -1.4027 2.5616 26 8 3.2307 -0.9191 1.2057 27 1 -0.3633 0.5139 -0.8899 28 1 -0.3633 -1.0276 0.0005 29 1 -0.3632 0.5139 0.8900 30 1 1.6887 1.8463 0.8900 31 1 1.6886 1.8463 -0.8900 32 1 3.4326 -0.1218 -1.6712 33 1 6.4922 1.3834 1.0223 34 1 8.1279 1.3698 0.3205 35 1 6.9299 2.5620 -0.2377 36 1 7.5165 -1.0805 -0.0472 37 1 6.5515 -1.4095 -1.5061 38 1 9.4363 -3.6769 -1.8178 39 1 2.8128 1.7175 2.3805 40 1 4.5102 1.5271 2.9184 41 1 2.1783 -0.0144 3.7695 42 1 3.8772 -0.2062 4.3062 43 1 4.3200 -1.8706 2.7151 44 1 2.5480 -2.1098 2.7825 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000331219470.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:29:05 Heat of formation + Delta-G solvation = -158.699858 kcal Electronic energy + Delta-G solvation = -27882.498371 eV Core-core repulsion = 23962.425803 eV Total energy + Delta-G solvation = -3920.072568 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 322.144 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -39.70392 -37.62123 -36.58208 -35.50264 -35.12255 -34.98117 -32.40094 -31.99134 -30.02019 -27.88825 -27.66961 -25.93323 -25.04189 -23.72991 -22.25071 -21.58333 -20.46983 -18.92416 -17.39136 -17.11308 -16.67665 -16.33958 -16.30606 -15.92471 -15.42115 -15.32846 -15.07622 -14.86857 -14.31316 -13.95432 -13.58902 -13.41095 -13.23725 -12.94815 -12.47345 -12.26634 -12.14991 -11.99010 -11.79512 -11.61473 -11.55877 -11.43757 -11.31439 -11.18662 -11.10417 -11.04991 -10.93563 -10.67141 -10.57868 -10.46885 -10.00161 -9.71399 -9.68191 -9.46813 -9.14505 -8.40858 -8.03426 -6.02178 -4.06062 1.27824 3.33498 3.41235 3.44718 3.48186 3.78813 4.02016 4.18898 4.48038 4.52941 4.65610 4.80497 4.87974 4.98607 5.10063 5.20082 5.24058 5.29436 5.32627 5.33271 5.36637 5.42908 5.60996 5.64124 5.65831 5.69005 5.77759 5.82701 5.89336 5.99870 6.09325 6.11227 6.33821 6.57360 7.02806 7.20536 7.22107 7.36121 7.48953 7.66640 7.95237 8.25088 8.96647 9.58985 11.06382 Molecular weight = 322.14amu Principal moments of inertia in cm(-1) A = 0.016768 B = 0.004491 C = 0.004115 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1669.480079 B = 6233.183808 C = 6803.158264 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.352 6.352 3 C 0.060 3.940 4 C 0.163 3.837 5 H 0.110 0.890 6 N -1.120 6.120 7 S 2.780 3.220 8 O -0.962 6.962 9 O -1.001 7.001 10 N -0.996 5.996 11 C 0.091 3.909 12 C 0.259 3.741 13 C -0.528 4.528 14 H 0.060 0.940 15 C 0.062 3.938 16 N -0.895 5.895 17 Si 0.896 3.104 18 H -0.272 1.272 19 H -0.284 1.284 20 H -0.282 1.282 21 C 0.052 3.948 22 H 0.084 0.916 23 C -0.153 4.153 24 C -0.150 4.150 25 C 0.041 3.959 26 O -0.329 6.329 27 H 0.035 0.965 28 H 0.083 0.917 29 H 0.034 0.966 30 H 0.057 0.943 31 H 0.055 0.945 32 H 0.420 0.580 33 H 0.037 0.963 34 H 0.079 0.921 35 H 0.066 0.934 36 H 0.034 0.966 37 H 0.039 0.961 38 H 0.262 0.738 39 H 0.074 0.926 40 H 0.077 0.923 41 H 0.069 0.931 42 H 0.072 0.928 43 H 0.056 0.944 44 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.636 7.701 11.305 20.775 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.269 6.269 3 C -0.019 4.019 4 C 0.054 3.946 5 H 0.128 0.872 6 N -0.878 5.878 7 S 2.787 3.213 8 O -0.946 6.946 9 O -0.985 6.985 10 N -0.838 5.838 11 C -0.055 4.055 12 C 0.137 3.863 13 C -0.567 4.567 14 H 0.078 0.922 15 C -0.140 4.140 16 N -0.534 5.534 17 Si 0.724 3.276 18 H -0.197 1.197 19 H -0.210 1.210 20 H -0.208 1.208 21 C -0.007 4.007 22 H 0.102 0.898 23 C -0.191 4.191 24 C -0.188 4.188 25 C -0.037 4.037 26 O -0.247 6.247 27 H 0.053 0.947 28 H 0.101 0.899 29 H 0.052 0.948 30 H 0.075 0.925 31 H 0.073 0.927 32 H 0.255 0.745 33 H 0.055 0.945 34 H 0.097 0.903 35 H 0.085 0.915 36 H 0.052 0.948 37 H 0.057 0.943 38 H 0.072 0.928 39 H 0.093 0.907 40 H 0.096 0.904 41 H 0.088 0.912 42 H 0.091 0.909 43 H 0.074 0.926 44 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -15.372 7.823 10.357 20.118 hybrid contribution 0.531 -0.272 -0.042 0.598 sum -14.841 7.551 10.315 19.587 Atomic orbital electron populations 1.22700 0.82389 1.02427 0.99156 1.88195 1.18019 1.25655 1.95054 1.22691 0.92604 0.86212 1.00349 1.20879 0.94153 0.95917 0.83602 0.87201 1.56169 1.41549 1.54905 1.35128 1.01991 0.72479 0.73165 0.73657 1.93646 1.84985 1.70233 1.45703 1.93516 1.87053 1.30831 1.87059 1.57615 1.50270 1.26785 1.49164 1.21415 1.01777 0.92404 0.89938 1.19033 0.93107 0.76420 0.97692 1.21539 1.08638 0.94988 1.31585 0.92150 1.24927 0.98103 0.95102 0.95890 1.69935 1.39188 0.99169 1.45108 0.86474 0.82590 0.78319 0.80240 1.19668 1.21032 1.20824 1.23707 0.97176 0.86115 0.93747 0.89805 1.23032 1.02082 0.98594 0.95389 1.22873 1.01869 0.95276 0.98738 1.23347 1.01339 0.95949 0.83052 1.89431 1.72220 1.36532 1.26546 0.94682 0.89875 0.94776 0.92548 0.92709 0.74542 0.94502 0.90264 0.91532 0.94824 0.94292 0.92792 0.90734 0.90402 0.91181 0.90912 0.92563 0.89689 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.28 11.01 101.05 1.11 1.39 16 2 O -0.35 -4.36 7.85 -58.86 -0.46 -4.82 16 3 C 0.06 0.67 5.46 37.16 0.20 0.87 16 4 C 0.16 2.13 2.72 -67.93 -0.18 1.94 16 5 H 0.11 1.30 7.50 -51.92 -0.39 0.91 16 6 N -1.12 -17.83 5.52 -4.89 -0.03 -17.85 16 7 S 2.78 55.70 6.08 -107.50 -0.65 55.05 16 8 O -0.96 -23.60 17.11 -57.17 -0.98 -24.57 16 9 O -1.00 -20.47 16.08 -57.17 -0.92 -21.39 16 10 N -1.00 -20.45 2.80 -123.05 -0.34 -20.80 16 11 C 0.09 1.51 10.46 59.85 0.63 2.13 16 12 C 0.26 6.54 5.08 -5.19 -0.03 6.51 16 13 C -0.53 -14.94 9.38 -34.44 -0.32 -15.27 16 14 H 0.06 1.71 7.81 -52.49 -0.41 1.30 16 15 C 0.06 1.77 5.46 -17.82 -0.10 1.68 16 16 N -0.89 -26.42 13.29 55.43 0.74 -25.69 16 17 Si 0.90 22.07 29.54 -169.99 -5.02 17.05 16 18 H -0.27 -6.63 7.11 56.52 0.40 -6.23 16 19 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 20 H -0.28 -6.94 7.11 56.52 0.40 -6.54 16 21 C 0.05 0.68 3.15 -25.96 -0.08 0.60 16 22 H 0.08 1.23 5.82 -51.93 -0.30 0.92 16 23 C -0.15 -1.48 6.47 -25.17 -0.16 -1.64 16 24 C -0.15 -1.37 7.09 -25.16 -0.18 -1.55 16 25 C 0.04 0.47 7.62 37.94 0.29 0.76 16 26 O -0.33 -4.77 8.77 -58.86 -0.52 -5.29 16 27 H 0.03 0.29 8.14 -51.93 -0.42 -0.13 16 28 H 0.08 0.71 8.14 -51.93 -0.42 0.28 16 29 H 0.03 0.26 8.14 -51.93 -0.42 -0.16 16 30 H 0.06 0.50 6.54 -51.93 -0.34 0.16 16 31 H 0.05 0.58 8.14 -51.93 -0.42 0.15 16 32 H 0.42 6.59 8.58 -34.47 -0.30 6.29 16 33 H 0.04 0.49 6.45 -51.93 -0.33 0.15 16 34 H 0.08 1.34 8.07 -51.93 -0.42 0.92 16 35 H 0.07 1.03 7.02 -51.93 -0.36 0.67 16 36 H 0.03 0.86 8.11 -51.93 -0.42 0.44 16 37 H 0.04 1.07 7.61 -51.93 -0.40 0.67 16 38 H 0.26 7.31 8.31 -40.82 -0.34 6.97 16 39 H 0.07 0.63 6.18 -51.93 -0.32 0.31 16 40 H 0.08 0.66 8.14 -51.93 -0.42 0.24 16 41 H 0.07 0.58 8.14 -51.93 -0.42 0.15 16 42 H 0.07 0.59 8.14 -51.93 -0.42 0.16 16 43 H 0.06 0.68 8.14 -51.93 -0.42 0.25 16 44 H 0.08 0.88 8.14 -51.93 -0.42 0.45 16 LS Contribution 363.54 15.07 5.48 5.48 Total: -1.00 -34.98 363.54 -8.46 -43.44 By element: Atomic # 1 Polarization: 8.89 SS G_CDS: -6.93 Total: 1.96 kcal Atomic # 6 Polarization: -3.75 SS G_CDS: 1.18 Total: -2.58 kcal Atomic # 7 Polarization: -64.70 SS G_CDS: 0.36 Total: -64.34 kcal Atomic # 8 Polarization: -53.19 SS G_CDS: -2.88 Total: -56.07 kcal Atomic # 14 Polarization: 22.07 SS G_CDS: -5.02 Total: 17.05 kcal Atomic # 16 Polarization: 55.70 SS G_CDS: -0.65 Total: 55.05 kcal Total LS contribution 5.48 Total: 5.48 kcal Total: -34.98 -8.46 -43.44 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000331219470.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -115.257 kcal (2) G-P(sol) polarization free energy of solvation -34.978 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -150.236 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.464 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.442 kcal (6) G-S(sol) free energy of system = (1) + (5) -158.700 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds