Wall clock time and date at job start Fri Apr 10 2020 18:29:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42894 * 114.00161 * 2 1 4 4 C 1.53004 * 109.46966 * 180.02562 * 3 2 1 5 5 H 1.09008 * 109.46804 * 184.99901 * 4 3 2 6 6 N 1.46496 * 109.47095 * 65.00257 * 4 3 2 7 7 S 1.65598 * 120.00105 * 145.00257 * 6 4 3 8 8 O 1.42101 * 106.40397 * 178.53756 * 7 6 4 9 9 O 1.42104 * 106.40066 * 311.45365 * 7 6 4 10 10 N 1.65598 * 107.22228 * 64.99172 * 7 6 4 11 11 C 1.46501 * 120.00207 * 270.00409 * 10 7 6 12 12 C 1.46506 * 119.99675 * 90.00053 * 10 7 6 13 13 C 1.50703 * 109.46969 * 95.00382 * 12 10 7 14 14 H 1.07995 * 119.99662 * 359.97438 * 13 12 10 15 15 C 1.37874 * 119.99557 * 180.02562 * 13 12 10 16 16 N 1.31509 * 120.00243 * 359.97438 * 15 13 12 17 17 Si 1.86806 * 119.99658 * 179.97438 * 15 13 12 18 18 H 1.48497 * 109.47140 * 0.02562 * 17 15 13 19 19 H 1.48502 * 109.46952 * 119.99750 * 17 15 13 20 20 H 1.48501 * 109.47118 * 240.00125 * 17 15 13 21 21 C 1.52997 * 109.47248 * 304.99601 * 4 3 2 22 22 H 1.08999 * 110.42032 * 172.68993 * 21 4 3 23 23 C 1.54477 * 110.37308 * 295.00440 * 21 4 3 24 24 C 1.54507 * 104.06510 * 142.80822 * 23 21 4 25 25 C 1.54483 * 104.06211 * 359.97438 * 24 23 21 26 26 O 1.44428 * 104.89902 * 335.96812 * 25 24 23 27 27 H 1.08996 * 109.47118 * 59.99733 * 1 2 3 28 28 H 1.08996 * 109.46996 * 180.02562 * 1 2 3 29 29 H 1.09002 * 109.46616 * 300.00123 * 1 2 3 30 30 H 1.09000 * 109.47375 * 60.00182 * 3 2 1 31 31 H 1.08999 * 109.47125 * 300.00158 * 3 2 1 32 32 H 0.96998 * 119.99939 * 324.98897 * 6 4 3 33 33 H 1.08999 * 109.47023 * 89.99660 * 11 10 7 34 34 H 1.08998 * 109.46783 * 209.99494 * 11 10 7 35 35 H 1.08999 * 109.46891 * 329.99449 * 11 10 7 36 36 H 1.09000 * 109.47209 * 215.00335 * 12 10 7 37 37 H 1.08992 * 109.47110 * 335.00121 * 12 10 7 38 38 H 0.97003 * 119.99992 * 180.02562 * 16 15 13 39 39 H 1.09000 * 110.51486 * 24.16264 * 23 21 4 40 40 H 1.09000 * 110.62726 * 261.50882 * 23 21 4 41 41 H 1.09005 * 110.51421 * 241.35469 * 24 23 21 42 42 H 1.09001 * 110.51335 * 118.64380 * 24 23 21 43 43 H 1.09002 * 110.37322 * 94.85326 * 25 24 23 44 44 H 1.08999 * 110.37312 * 217.08002 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5355 1.1845 -0.0006 5 1 3.9786 2.1764 0.0889 6 7 3.9757 0.5643 -1.2527 7 16 5.4006 1.0343 -1.9534 8 8 5.5586 0.2343 -3.1172 9 8 5.3835 2.4550 -1.9834 10 7 6.6207 0.6031 -0.9202 11 6 7.0715 1.5395 0.1123 12 6 7.2493 -0.7149 -1.0387 13 6 8.4914 -0.6048 -1.8850 14 1 8.7830 0.3511 -2.2940 15 6 9.2546 -1.7248 -2.1379 16 7 8.8991 -2.8890 -1.6402 17 14 10.7939 -1.5885 -3.1876 18 1 10.9731 -0.1801 -3.6228 19 1 11.9740 -2.0145 -2.3932 20 1 10.6585 -2.4624 -4.3805 21 6 3.9790 0.3193 1.1807 22 1 5.0483 0.1158 1.1227 23 6 3.6357 1.0157 2.5161 24 6 3.2112 -0.1432 3.4456 25 6 3.3476 -1.4027 2.5616 26 8 3.2307 -0.9191 1.2057 27 1 -0.3633 0.5139 -0.8899 28 1 -0.3633 -1.0276 0.0005 29 1 -0.3632 0.5139 0.8900 30 1 1.6887 1.8463 0.8900 31 1 1.6886 1.8463 -0.8900 32 1 3.4326 -0.1218 -1.6712 33 1 6.4922 1.3834 1.0223 34 1 8.1279 1.3698 0.3205 35 1 6.9299 2.5620 -0.2377 36 1 7.5165 -1.0805 -0.0472 37 1 6.5515 -1.4095 -1.5061 38 1 9.4363 -3.6769 -1.8178 39 1 2.8128 1.7175 2.3805 40 1 4.5102 1.5271 2.9184 41 1 2.1783 -0.0144 3.7695 42 1 3.8772 -0.2062 4.3062 43 1 4.3200 -1.8706 2.7151 44 1 2.5480 -2.1098 2.7825 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000331219470.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:29:04 Heat of formation + Delta-G solvation = -185.690897 kcal Electronic energy + Delta-G solvation = -27883.668790 eV Core-core repulsion = 23962.425803 eV Total energy + Delta-G solvation = -3921.242987 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 322.144 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -40.63262 -38.49775 -38.26321 -37.22841 -36.85433 -36.11257 -34.50103 -32.85993 -31.06941 -29.67404 -28.61391 -26.79287 -26.70211 -24.63949 -24.20716 -22.43488 -21.41117 -20.40547 -19.03326 -18.41621 -18.35822 -17.95490 -17.30282 -17.06744 -16.72870 -16.39785 -16.24405 -16.02671 -15.79278 -15.10914 -15.05125 -14.67075 -14.39209 -14.13683 -13.92509 -13.76538 -13.67699 -13.33327 -13.14180 -13.02712 -12.93166 -12.81158 -12.64307 -12.48526 -12.45626 -12.41363 -12.29852 -12.09195 -11.93793 -11.82416 -11.71689 -11.37453 -10.67186 -10.59530 -10.37422 -10.23933 -9.77384 -8.19669 -6.31880 -0.31237 1.38149 1.41012 1.52602 2.00957 2.40471 2.62662 2.95023 3.11149 3.13688 3.47367 3.66793 3.74325 3.95669 4.09148 4.11751 4.22782 4.35042 4.39571 4.45185 4.51465 4.65817 4.66178 4.71837 4.79033 4.81876 4.90880 4.94677 4.98980 5.02427 5.05147 5.08947 5.21956 5.23970 5.30571 5.46896 5.70896 5.86955 6.09267 6.11993 6.15252 6.45290 6.77260 7.37172 8.88146 Molecular weight = 322.14amu Principal moments of inertia in cm(-1) A = 0.016768 B = 0.004491 C = 0.004115 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1669.480079 B = 6233.183808 C = 6803.158264 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.378 6.378 3 C 0.061 3.939 4 C 0.151 3.849 5 H 0.125 0.875 6 N -1.109 6.109 7 S 2.796 3.204 8 O -1.014 7.014 9 O -1.004 7.004 10 N -1.000 6.000 11 C 0.084 3.916 12 C 0.279 3.721 13 C -0.548 4.548 14 H 0.053 0.947 15 C 0.011 3.989 16 N -0.925 5.925 17 Si 0.958 3.042 18 H -0.269 1.269 19 H -0.269 1.269 20 H -0.281 1.281 21 C 0.046 3.954 22 H 0.061 0.939 23 C -0.147 4.147 24 C -0.141 4.141 25 C 0.031 3.969 26 O -0.355 6.355 27 H 0.041 0.959 28 H 0.083 0.917 29 H 0.051 0.949 30 H 0.086 0.914 31 H 0.059 0.941 32 H 0.421 0.579 33 H 0.072 0.928 34 H 0.071 0.929 35 H 0.079 0.921 36 H 0.026 0.974 37 H 0.009 0.991 38 H 0.267 0.733 39 H 0.093 0.907 40 H 0.092 0.908 41 H 0.084 0.916 42 H 0.085 0.915 43 H 0.042 0.958 44 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.351 9.276 12.757 22.719 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.297 6.297 3 C -0.017 4.017 4 C 0.044 3.956 5 H 0.143 0.857 6 N -0.870 5.870 7 S 2.804 3.196 8 O -0.998 6.998 9 O -0.988 6.988 10 N -0.842 5.842 11 C -0.061 4.061 12 C 0.155 3.845 13 C -0.587 4.587 14 H 0.072 0.928 15 C -0.188 4.188 16 N -0.565 5.565 17 Si 0.782 3.218 18 H -0.193 1.193 19 H -0.194 1.194 20 H -0.207 1.207 21 C -0.013 4.013 22 H 0.079 0.921 23 C -0.186 4.186 24 C -0.179 4.179 25 C -0.046 4.046 26 O -0.274 6.274 27 H 0.060 0.940 28 H 0.102 0.898 29 H 0.070 0.930 30 H 0.104 0.896 31 H 0.078 0.922 32 H 0.256 0.744 33 H 0.090 0.910 34 H 0.090 0.910 35 H 0.098 0.902 36 H 0.044 0.956 37 H 0.027 0.973 38 H 0.076 0.924 39 H 0.111 0.889 40 H 0.110 0.890 41 H 0.103 0.897 42 H 0.103 0.897 43 H 0.060 0.940 44 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -16.089 9.428 11.833 22.085 hybrid contribution 0.653 -0.762 -0.440 1.096 sum -15.435 8.665 11.393 21.051 Atomic orbital electron populations 1.22823 0.80897 1.02943 1.00311 1.88164 1.19737 1.26469 1.95310 1.22734 0.90829 0.86165 1.01986 1.21293 0.96059 0.96291 0.81949 0.85728 1.55807 1.39763 1.55033 1.36384 1.01266 0.72876 0.72595 0.72844 1.93570 1.86040 1.71383 1.48782 1.93501 1.87380 1.30779 1.87103 1.57456 1.50856 1.25684 1.50238 1.21670 1.02011 0.92049 0.90385 1.18508 0.91621 0.78097 0.96292 1.21880 1.09863 0.94847 1.32119 0.92838 1.25762 1.01209 0.94798 0.97057 1.70031 1.40496 0.99820 1.46164 0.85519 0.79267 0.78359 0.78624 1.19286 1.19402 1.20666 1.23727 0.95834 0.86225 0.95559 0.92079 1.23056 1.03442 0.98791 0.93263 1.22841 1.03138 0.93460 0.98418 1.23494 1.00942 0.97465 0.82715 1.89409 1.72332 1.37398 1.28217 0.94011 0.89804 0.93043 0.89578 0.92248 0.74386 0.90979 0.90970 0.90208 0.95557 0.97268 0.92437 0.88866 0.88954 0.89697 0.89664 0.93987 0.88868 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.44 11.01 113.37 1.25 1.68 16 2 O -0.38 -8.77 7.85 -126.39 -0.99 -9.76 16 3 C 0.06 1.21 5.46 71.98 0.39 1.60 16 4 C 0.15 3.69 2.72 44.99 0.12 3.81 16 5 H 0.13 2.63 7.50 -2.38 -0.02 2.61 16 6 N -1.11 -35.16 5.52 -169.39 -0.94 -36.10 16 7 S 2.80 113.08 6.08 -56.49 -0.34 112.73 16 8 O -1.01 -51.45 17.11 -128.00 -2.19 -53.64 16 9 O -1.00 -40.24 16.08 -128.00 -2.06 -42.30 16 10 N -1.00 -41.51 2.80 -543.22 -1.52 -43.03 16 11 C 0.08 2.69 10.46 127.77 1.34 4.03 16 12 C 0.28 14.49 5.08 85.63 0.43 14.93 16 13 C -0.55 -31.63 9.38 25.60 0.24 -31.39 16 14 H 0.05 3.08 7.81 -2.91 -0.02 3.06 16 15 C 0.01 0.64 5.46 84.65 0.46 1.10 16 16 N -0.93 -55.56 13.29 21.45 0.28 -55.28 16 17 Si 0.96 45.45 29.54 68.60 2.03 47.47 16 18 H -0.27 -12.47 7.11 99.48 0.71 -11.76 16 19 H -0.27 -12.03 7.11 99.48 0.71 -11.32 16 20 H -0.28 -13.20 7.11 99.48 0.71 -12.49 16 21 C 0.05 1.14 3.15 31.10 0.10 1.24 16 22 H 0.06 1.75 5.82 -2.39 -0.01 1.74 16 23 C -0.15 -2.39 6.47 31.61 0.20 -2.18 16 24 C -0.14 -2.19 7.09 31.61 0.22 -1.97 16 25 C 0.03 0.69 7.62 72.49 0.55 1.24 16 26 O -0.36 -10.07 8.77 -126.39 -1.11 -11.18 16 27 H 0.04 0.61 8.14 -2.39 -0.02 0.59 16 28 H 0.08 1.32 8.14 -2.39 -0.02 1.30 16 29 H 0.05 0.65 8.14 -2.39 -0.02 0.63 16 30 H 0.09 1.19 6.54 -2.39 -0.02 1.17 16 31 H 0.06 1.11 8.14 -2.39 -0.02 1.09 16 32 H 0.42 13.45 8.58 -96.75 -0.83 12.62 16 33 H 0.07 1.79 6.45 -2.39 -0.02 1.78 16 34 H 0.07 2.41 8.07 -2.39 -0.02 2.39 16 35 H 0.08 2.34 7.02 -2.39 -0.02 2.33 16 36 H 0.03 1.39 8.11 -2.39 -0.02 1.37 16 37 H 0.01 0.53 7.61 -2.39 -0.02 0.52 16 38 H 0.27 15.01 8.31 -92.71 -0.77 14.24 16 39 H 0.09 1.16 6.18 -2.39 -0.01 1.15 16 40 H 0.09 1.24 8.14 -2.39 -0.02 1.22 16 41 H 0.08 1.09 8.14 -2.38 -0.02 1.07 16 42 H 0.08 1.12 8.14 -2.39 -0.02 1.10 16 43 H 0.04 1.02 8.14 -2.39 -0.02 1.00 16 44 H 0.09 1.84 8.14 -2.39 -0.02 1.82 16 Total: -1.00 -76.41 363.54 -1.35 -77.77 By element: Atomic # 1 Polarization: 19.05 SS G_CDS: 0.17 Total: 19.22 kcal Atomic # 6 Polarization: -11.23 SS G_CDS: 5.32 Total: -5.91 kcal Atomic # 7 Polarization: -132.23 SS G_CDS: -2.17 Total: -134.40 kcal Atomic # 8 Polarization: -110.53 SS G_CDS: -6.35 Total: -116.88 kcal Atomic # 14 Polarization: 45.45 SS G_CDS: 2.03 Total: 47.47 kcal Atomic # 16 Polarization: 113.08 SS G_CDS: -0.34 Total: 112.73 kcal Total: -76.41 -1.35 -77.77 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000331219470.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -107.925 kcal (2) G-P(sol) polarization free energy of solvation -76.415 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -184.339 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.352 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.766 kcal (6) G-S(sol) free energy of system = (1) + (5) -185.691 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds