Wall clock time and date at job start Fri Apr 10 2020 18:29:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.42900 * 113.99602 * 2 1 4 4 C 1.52998 * 109.47029 * 180.02562 * 3 2 1 5 5 N 1.46497 * 109.47338 * 64.99959 * 4 3 2 6 6 C 1.46499 * 120.00471 * 84.99755 * 5 4 3 7 7 C 1.50701 * 109.47260 * 275.00665 * 6 5 4 8 8 H 1.08002 * 119.99761 * 359.97438 * 7 6 5 9 9 C 1.37871 * 119.99694 * 180.27562 * 7 6 5 10 10 N 1.31514 * 120.00482 * 359.71466 * 9 7 6 11 11 Si 1.86801 * 119.99746 * 179.72062 * 9 7 6 12 12 H 1.48494 * 109.47230 * 359.97438 * 11 9 7 13 13 H 1.48505 * 109.47301 * 119.99669 * 11 9 7 14 14 H 1.48498 * 109.47430 * 239.99516 * 11 9 7 15 15 S 1.65603 * 119.99916 * 265.00339 * 5 4 3 16 16 O 1.42100 * 106.40487 * 23.53428 * 15 5 4 17 17 O 1.42102 * 106.40550 * 156.46009 * 15 5 4 18 18 N 1.65605 * 107.21743 * 269.99767 * 15 5 4 19 19 C 1.46503 * 119.99894 * 65.00090 * 18 15 5 20 20 C 1.52995 * 109.47022 * 165.00094 * 19 18 15 21 21 H 1.09005 * 110.27425 * 60.63912 * 20 19 18 22 22 C 1.54956 * 110.30722 * 182.83088 * 20 19 18 23 23 C 1.55303 * 100.93981 * 155.36182 * 22 20 19 24 24 C 1.54391 * 102.25348 * 325.86749 * 23 22 20 25 25 O 1.43233 * 107.58726 * 21.35485 * 24 23 22 26 26 H 1.09000 * 109.47372 * 60.00371 * 1 2 3 27 27 H 1.09000 * 109.46695 * 180.02562 * 1 2 3 28 28 H 1.08993 * 109.47213 * 299.99595 * 1 2 3 29 29 H 1.08995 * 109.47108 * 59.99421 * 3 2 1 30 30 H 1.09005 * 109.47287 * 299.99898 * 3 2 1 31 31 H 1.09005 * 109.46668 * 304.99673 * 4 3 2 32 32 H 1.08999 * 109.46953 * 185.00297 * 4 3 2 33 33 H 1.09000 * 109.47197 * 154.99670 * 6 5 4 34 34 H 1.09007 * 109.46342 * 35.00243 * 6 5 4 35 35 H 0.96995 * 120.00207 * 179.97438 * 10 9 7 36 36 H 0.96997 * 119.99953 * 244.99938 * 18 15 5 37 37 H 1.09007 * 109.46979 * 285.00166 * 19 18 15 38 38 H 1.08997 * 109.47431 * 44.99911 * 19 18 15 39 39 H 1.09000 * 111.12090 * 273.27545 * 22 20 19 40 40 H 1.08990 * 111.12223 * 37.44059 * 22 20 19 41 41 H 1.08996 * 110.84736 * 207.67846 * 23 22 20 42 42 H 1.09002 * 111.02442 * 84.13303 * 23 22 20 43 43 H 1.09002 * 109.82434 * 261.84494 * 24 23 22 44 44 H 1.08993 * 109.90792 * 140.91463 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1848 -0.0006 5 7 3.9757 0.5646 -1.2527 6 6 4.1808 1.3891 -2.4462 7 6 2.8683 1.5681 -3.1647 8 1 1.9711 1.1129 -2.7719 9 6 2.8140 2.3079 -4.3269 10 7 3.9065 2.8620 -4.8054 11 14 1.1885 2.5233 -5.2218 12 1 0.1183 1.8058 -4.4838 13 1 0.8538 3.9681 -5.2993 14 1 1.3014 1.9671 -6.5940 15 16 4.2414 -1.0687 -1.3190 16 8 3.4688 -1.6437 -0.2743 17 8 4.1045 -1.4425 -2.6832 18 7 5.8287 -1.3236 -0.9214 19 6 6.3074 -1.0009 0.4250 20 6 7.6694 -1.6593 0.6534 21 1 8.3946 -1.2880 -0.0708 22 6 8.1619 -1.3894 2.0976 23 6 9.1187 -2.5937 2.3127 24 6 8.4211 -3.7136 1.5109 25 8 7.5551 -3.0880 0.5570 26 1 -0.3634 0.5138 -0.8900 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3633 0.5137 0.8900 29 1 1.6885 1.8464 0.8899 30 1 1.6885 1.8464 -0.8900 31 1 3.8514 0.5683 0.8410 32 1 3.9784 2.1766 0.0890 33 1 4.8938 0.8983 -3.1086 34 1 4.5698 2.3638 -2.1517 35 1 3.8684 3.3821 -5.6232 36 1 6.4413 -1.6866 -1.5800 37 1 6.4047 0.0800 0.5267 38 1 5.5960 -1.3726 1.1625 39 1 8.7007 -0.4439 2.1586 40 1 7.3339 -1.4142 2.8060 41 1 9.1823 -2.8547 3.3690 42 1 10.1082 -2.3844 1.9062 43 1 7.8375 -4.3416 2.1841 44 1 9.1656 -4.3186 0.9935 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000336883229.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:29:18 Heat of formation + Delta-G solvation = -165.236095 kcal Electronic energy + Delta-G solvation = -27158.786941 eV Core-core repulsion = 23238.430940 eV Total energy + Delta-G solvation = -3920.356001 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 322.144 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -39.62780 -37.52601 -36.29244 -35.30200 -34.87625 -34.81259 -32.46702 -32.33651 -29.77767 -29.27426 -26.71109 -25.60838 -25.12938 -22.65187 -21.89655 -21.62462 -21.43617 -18.70751 -17.23524 -17.03098 -16.76449 -16.54978 -15.94798 -15.80519 -15.63755 -14.94062 -14.88071 -14.65636 -14.36997 -14.16573 -13.75117 -13.25540 -13.06549 -12.78428 -12.57599 -12.37610 -12.07093 -11.93692 -11.90006 -11.56523 -11.52445 -11.37919 -11.12299 -11.08882 -11.05287 -10.96771 -10.76996 -10.71452 -10.54165 -10.36950 -9.94084 -9.64883 -9.60729 -9.15262 -8.97060 -8.40190 -8.01151 -6.02620 -4.04833 1.44964 3.31772 3.40323 3.44749 3.53299 3.77756 4.22069 4.39087 4.41460 4.49386 4.50116 4.63923 4.91469 4.98392 5.13641 5.22960 5.33595 5.38769 5.42408 5.49911 5.52448 5.56993 5.62647 5.67602 5.70236 5.76143 5.83443 5.91273 5.92386 6.05568 6.12000 6.19188 6.38907 6.69100 6.89594 7.20821 7.36142 7.50983 7.68747 7.82519 7.96718 8.27059 8.98522 9.59664 11.06195 Molecular weight = 322.14amu Principal moments of inertia in cm(-1) A = 0.017018 B = 0.004078 C = 0.003668 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1644.890196 B = 6864.854243 C = 7632.342868 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 O -0.368 6.368 3 C 0.033 3.967 4 C 0.141 3.859 5 N -0.990 5.990 6 C 0.257 3.743 7 C -0.521 4.521 8 H 0.064 0.936 9 C 0.061 3.939 10 N -0.897 5.897 11 Si 0.893 3.107 12 H -0.273 1.273 13 H -0.285 1.285 14 H -0.283 1.283 15 S 2.781 3.219 16 O -0.972 6.972 17 O -0.970 6.970 18 N -1.132 6.132 19 C 0.124 3.876 20 C 0.074 3.926 21 H 0.079 0.921 22 C -0.151 4.151 23 C -0.155 4.155 24 C 0.048 3.952 25 O -0.371 6.371 26 H 0.038 0.962 27 H 0.078 0.922 28 H 0.031 0.969 29 H 0.041 0.959 30 H 0.076 0.924 31 H 0.069 0.931 32 H 0.086 0.914 33 H 0.037 0.963 34 H 0.033 0.967 35 H 0.262 0.738 36 H 0.412 0.588 37 H 0.074 0.926 38 H 0.081 0.919 39 H 0.087 0.913 40 H 0.084 0.916 41 H 0.081 0.919 42 H 0.076 0.924 43 H 0.068 0.932 44 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.344 -5.231 16.019 18.804 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.286 6.286 3 C -0.045 4.045 4 C 0.014 3.986 5 N -0.831 5.831 6 C 0.135 3.865 7 C -0.560 4.560 8 H 0.082 0.918 9 C -0.141 4.141 10 N -0.536 5.536 11 Si 0.721 3.279 12 H -0.197 1.197 13 H -0.211 1.211 14 H -0.209 1.209 15 S 2.788 3.212 16 O -0.955 6.955 17 O -0.953 6.953 18 N -0.890 5.890 19 C -0.003 4.003 20 C 0.015 3.985 21 H 0.097 0.903 22 C -0.189 4.189 23 C -0.193 4.193 24 C -0.028 4.028 25 O -0.291 6.291 26 H 0.056 0.944 27 H 0.097 0.903 28 H 0.050 0.950 29 H 0.059 0.941 30 H 0.094 0.906 31 H 0.087 0.913 32 H 0.104 0.896 33 H 0.055 0.945 34 H 0.051 0.949 35 H 0.071 0.929 36 H 0.245 0.755 37 H 0.092 0.908 38 H 0.099 0.901 39 H 0.105 0.895 40 H 0.103 0.897 41 H 0.100 0.900 42 H 0.095 0.905 43 H 0.087 0.913 44 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 7.624 -5.991 15.641 18.403 hybrid contribution -0.341 0.742 -0.674 1.059 sum 7.283 -5.249 14.967 17.453 Atomic orbital electron populations 1.22649 0.82609 1.01975 0.99192 1.88100 1.18237 1.27031 1.95224 1.23181 0.95007 0.85591 1.00767 1.21037 0.92627 0.99171 0.85752 1.57752 1.80630 1.27096 1.17660 1.19045 0.97212 0.90353 0.79931 1.21591 0.94988 1.31378 1.08093 0.91816 1.24925 0.96561 0.95660 0.96938 1.69924 1.27181 1.34531 1.22008 0.86524 0.83977 0.77464 0.79960 1.19733 1.21108 1.20854 1.02070 0.72547 0.73283 0.73264 1.93582 1.67314 1.75931 1.58713 1.93621 1.84930 1.82227 1.34569 1.56217 1.32203 1.81150 1.19470 1.21340 0.95337 0.98871 0.84738 1.23229 0.96674 0.81983 0.96585 0.90338 1.23293 0.99823 0.99238 0.96595 1.23112 0.99471 0.95237 1.01488 1.23130 0.93060 0.95444 0.91206 1.88513 1.64517 1.17860 1.58198 0.94354 0.90342 0.95030 0.94082 0.90581 0.91310 0.89630 0.94485 0.94879 0.92874 0.75496 0.90816 0.90093 0.89457 0.89749 0.90007 0.90514 0.91347 0.91540 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.54 11.01 101.05 1.11 1.65 16 2 O -0.37 -7.38 8.76 -54.45 -0.48 -7.86 16 3 C 0.03 0.59 6.03 37.16 0.22 0.82 16 4 C 0.14 2.41 5.84 -4.04 -0.02 2.39 16 5 N -0.99 -20.48 2.80 -115.66 -0.32 -20.81 16 6 C 0.26 6.33 5.12 -5.19 -0.03 6.30 16 7 C -0.52 -14.42 8.38 -34.44 -0.29 -14.71 16 8 H 0.06 1.79 6.77 -52.49 -0.36 1.44 16 9 C 0.06 1.72 5.46 -17.82 -0.10 1.62 16 10 N -0.90 -26.04 13.29 55.43 0.74 -25.31 16 11 Si 0.89 21.89 29.54 -169.99 -5.02 16.87 16 12 H -0.27 -6.62 7.11 56.52 0.40 -6.22 16 13 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 14 H -0.28 -6.96 7.11 56.52 0.40 -6.56 16 15 S 2.78 58.39 6.01 -107.50 -0.65 57.74 16 16 O -0.97 -21.57 14.76 -65.29 -0.96 -22.53 16 17 O -0.97 -24.68 17.11 -57.17 -0.98 -25.66 16 18 N -1.13 -18.27 5.97 -10.61 -0.06 -18.33 16 19 C 0.12 1.59 5.98 -4.04 -0.02 1.56 16 20 C 0.07 0.80 3.53 -25.70 -0.09 0.71 16 21 H 0.08 0.79 8.14 -51.93 -0.42 0.37 16 22 C -0.15 -1.17 6.57 -24.48 -0.16 -1.33 16 23 C -0.16 -1.07 7.02 -24.78 -0.17 -1.25 16 24 C 0.05 0.44 7.79 37.89 0.30 0.74 16 25 O -0.37 -4.78 10.95 -35.23 -0.39 -5.17 16 26 H 0.04 0.63 8.14 -51.93 -0.42 0.21 16 27 H 0.08 1.18 8.14 -51.93 -0.42 0.76 16 28 H 0.03 0.43 8.14 -51.93 -0.42 0.00 16 29 H 0.04 0.60 8.14 -51.93 -0.42 0.18 16 30 H 0.08 1.53 6.24 -51.93 -0.32 1.21 16 31 H 0.07 1.03 7.61 -51.93 -0.40 0.63 16 32 H 0.09 1.26 8.00 -51.93 -0.42 0.84 16 33 H 0.04 0.99 7.61 -51.93 -0.40 0.59 16 34 H 0.03 0.81 8.00 -51.93 -0.42 0.40 16 35 H 0.26 7.20 8.31 -40.82 -0.34 6.86 16 36 H 0.41 6.25 8.65 -34.47 -0.30 5.96 16 37 H 0.07 0.80 8.14 -51.92 -0.42 0.37 16 38 H 0.08 1.08 7.75 -51.93 -0.40 0.67 16 39 H 0.09 0.54 8.14 -51.93 -0.42 0.11 16 40 H 0.08 0.64 8.06 -51.93 -0.42 0.22 16 41 H 0.08 0.45 8.14 -51.93 -0.42 0.03 16 42 H 0.08 0.47 8.14 -51.93 -0.42 0.04 16 43 H 0.07 0.59 8.14 -51.93 -0.42 0.16 16 44 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 LS Contribution 369.80 15.07 5.57 5.57 Total: -1.00 -35.96 369.80 -9.01 -44.97 By element: Atomic # 1 Polarization: 9.22 SS G_CDS: -7.21 Total: 2.01 kcal Atomic # 6 Polarization: -2.26 SS G_CDS: 0.75 Total: -1.51 kcal Atomic # 7 Polarization: -64.79 SS G_CDS: 0.35 Total: -64.44 kcal Atomic # 8 Polarization: -58.41 SS G_CDS: -2.80 Total: -61.22 kcal Atomic # 14 Polarization: 21.89 SS G_CDS: -5.02 Total: 16.87 kcal Atomic # 16 Polarization: 58.39 SS G_CDS: -0.65 Total: 57.74 kcal Total LS contribution 5.57 Total: 5.57 kcal Total: -35.96 -9.01 -44.97 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000336883229.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -120.265 kcal (2) G-P(sol) polarization free energy of solvation -35.961 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -156.227 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.009 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.971 kcal (6) G-S(sol) free energy of system = (1) + (5) -165.236 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds