Wall clock time and date at job start Fri Apr 10 2020 18:29:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.42902 * 114.00169 * 2 1 4 4 C 1.52993 * 109.46963 * 179.97438 * 3 2 1 5 5 N 1.46495 * 109.47470 * 65.00005 * 4 3 2 6 6 C 1.46507 * 119.99821 * 274.99657 * 5 4 3 7 7 C 1.50695 * 109.47338 * 279.39266 * 6 5 4 8 8 H 1.08000 * 119.99762 * 359.37172 * 7 6 5 9 9 C 1.37870 * 120.00078 * 179.35950 * 7 6 5 10 10 N 1.31520 * 120.00085 * 0.02562 * 9 7 6 11 11 Si 1.86798 * 119.99998 * 180.02562 * 9 7 6 12 12 H 1.48493 * 109.47282 * 0.02562 * 11 9 7 13 13 H 1.48500 * 109.46962 * 120.00570 * 11 9 7 14 14 H 1.48500 * 109.47280 * 240.00260 * 11 9 7 15 15 S 1.65603 * 120.00289 * 94.99434 * 5 4 3 16 16 O 1.42100 * 106.40193 * 330.28387 * 15 5 4 17 17 O 1.42100 * 106.40269 * 197.36310 * 15 5 4 18 18 N 1.65597 * 107.21637 * 83.82354 * 15 5 4 19 19 C 1.46510 * 120.00184 * 66.28203 * 18 15 5 20 20 C 1.52997 * 109.47141 * 163.34118 * 19 18 15 21 21 H 1.08998 * 109.82359 * 305.56923 * 20 19 18 22 22 C 1.54382 * 109.83015 * 184.58974 * 20 19 18 23 23 C 1.55311 * 102.25526 * 219.13253 * 22 20 19 24 24 C 1.54950 * 100.93889 * 34.13022 * 23 22 20 25 25 O 1.43243 * 109.83162 * 66.45738 * 20 19 18 26 26 H 1.09002 * 109.47463 * 300.00342 * 1 2 3 27 27 H 1.08995 * 109.47167 * 60.00289 * 1 2 3 28 28 H 1.09002 * 109.47477 * 180.02562 * 1 2 3 29 29 H 1.08997 * 109.47319 * 59.99558 * 3 2 1 30 30 H 1.09006 * 109.46651 * 299.99540 * 3 2 1 31 31 H 1.09000 * 109.47438 * 304.99483 * 4 3 2 32 32 H 1.09006 * 109.46965 * 184.99575 * 4 3 2 33 33 H 1.09000 * 109.46560 * 39.40033 * 6 5 4 34 34 H 1.09001 * 109.46994 * 159.39336 * 6 5 4 35 35 H 0.96996 * 120.00121 * 179.97438 * 10 9 7 36 36 H 0.96994 * 120.00423 * 246.28636 * 18 15 5 37 37 H 1.09002 * 109.46752 * 283.34232 * 19 18 15 38 38 H 1.08999 * 109.46670 * 43.34313 * 19 18 15 39 39 H 1.09001 * 110.84348 * 337.32008 * 22 20 19 40 40 H 1.08992 * 110.85040 * 100.93669 * 22 20 19 41 41 H 1.09000 * 111.11967 * 276.21643 * 23 22 20 42 42 H 1.08994 * 111.12393 * 152.04868 * 23 22 20 43 43 H 1.09005 * 110.30594 * 204.64758 * 24 23 22 44 44 H 1.08998 * 110.31131 * 82.47611 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 6 3.5354 1.1846 0.0006 5 7 3.9767 0.5639 -1.2508 6 6 4.0015 -0.8957 -1.3756 7 6 5.2506 -1.4342 -0.7271 8 1 5.9605 -0.7562 -0.2767 9 6 5.4871 -2.7923 -0.7083 10 7 4.6227 -3.6179 -1.2570 11 14 7.0351 -3.4598 0.0962 12 1 7.8376 -2.3331 0.6362 13 1 6.6617 -4.3763 1.2034 14 1 7.8363 -4.2009 -0.9108 15 16 4.4474 1.5119 -2.5244 16 8 3.7081 2.7209 -2.4194 17 8 4.4176 0.6803 -3.6762 18 7 6.0352 1.9118 -2.2772 19 6 7.0672 0.8726 -2.3175 20 6 8.4419 1.5249 -2.4773 21 1 8.4419 2.1779 -3.3501 22 6 9.5235 0.4349 -2.6363 23 6 10.7013 1.0158 -1.8072 24 6 9.9333 1.7430 -0.6749 25 8 8.7598 2.2822 -1.3038 26 1 -0.3634 0.5139 0.8899 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3634 -1.0277 0.0005 29 1 1.6886 1.8464 0.8899 30 1 1.6887 1.8463 -0.8901 31 1 3.8508 0.5685 0.8427 32 1 3.9785 2.1765 0.0901 33 1 3.1254 -1.3173 -0.8829 34 1 3.9925 -1.1703 -2.4304 35 1 4.7892 -4.5734 -1.2441 36 1 6.2821 2.8340 -2.1057 37 1 7.0423 0.2999 -1.3904 38 1 6.8803 0.2075 -3.1606 39 1 9.1841 -0.5124 -2.2171 40 1 9.8059 0.3183 -3.6825 41 1 11.2884 1.7188 -2.3981 42 1 11.3301 0.2203 -1.4074 43 1 10.5426 2.5458 -0.2595 44 1 9.6530 1.0366 0.1065 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000336883230.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:29:21 Heat of formation + Delta-G solvation = -169.959936 kcal Electronic energy + Delta-G solvation = -27482.918660 eV Core-core repulsion = 23562.357819 eV Total energy + Delta-G solvation = -3920.560842 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 322.144 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -39.43405 -37.65540 -36.57004 -35.29054 -35.12550 -34.60759 -32.52144 -32.10798 -29.54868 -29.41319 -26.71138 -25.60694 -24.90136 -22.78231 -21.75928 -21.69318 -21.02074 -18.68793 -17.22184 -16.95040 -16.91532 -16.37406 -15.87762 -15.82840 -15.57247 -15.48192 -14.76883 -14.48131 -14.39537 -14.07162 -13.57960 -13.39797 -12.74871 -12.61643 -12.47674 -12.26898 -12.02659 -11.92616 -11.82625 -11.72094 -11.59343 -11.38307 -11.21245 -11.15594 -11.04784 -10.89796 -10.83481 -10.76025 -10.55477 -10.34715 -9.97805 -9.72318 -9.44990 -9.21345 -8.88145 -8.41158 -7.93520 -6.02865 -4.07944 1.37244 3.24602 3.32886 3.34317 3.56793 3.89936 4.24581 4.25271 4.40037 4.50038 4.78510 4.85799 5.13697 5.21779 5.27279 5.30654 5.41106 5.46021 5.50676 5.62153 5.64745 5.71234 5.73105 5.76809 5.80163 5.83449 5.87310 5.99630 6.01365 6.09287 6.23003 6.42189 6.50319 6.67770 7.09386 7.42249 7.56995 7.62643 7.66822 7.84513 7.97637 8.27882 8.96729 9.55732 11.05231 Molecular weight = 322.14amu Principal moments of inertia in cm(-1) A = 0.010608 B = 0.006085 C = 0.004449 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2638.774962 B = 4600.387124 C = 6291.673681 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.368 6.368 3 C 0.043 3.957 4 C 0.138 3.862 5 N -0.985 5.985 6 C 0.243 3.757 7 C -0.534 4.534 8 H 0.063 0.937 9 C 0.065 3.935 10 N -0.887 5.887 11 Si 0.886 3.114 12 H -0.273 1.273 13 H -0.284 1.284 14 H -0.284 1.284 15 S 2.783 3.217 16 O -1.004 7.004 17 O -0.979 6.979 18 N -1.126 6.126 19 C 0.109 3.891 20 C 0.075 3.925 21 H 0.083 0.917 22 C -0.152 4.152 23 C -0.156 4.156 24 C 0.049 3.951 25 O -0.376 6.376 26 H 0.033 0.967 27 H 0.035 0.965 28 H 0.082 0.918 29 H 0.049 0.951 30 H 0.051 0.949 31 H 0.090 0.910 32 H 0.077 0.923 33 H 0.056 0.944 34 H 0.048 0.952 35 H 0.262 0.738 36 H 0.409 0.591 37 H 0.090 0.910 38 H 0.088 0.912 39 H 0.088 0.912 40 H 0.084 0.916 41 H 0.075 0.925 42 H 0.082 0.918 43 H 0.081 0.919 44 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.614 9.932 1.454 11.501 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.287 6.287 3 C -0.036 4.036 4 C 0.011 3.989 5 N -0.826 5.826 6 C 0.121 3.879 7 C -0.574 4.574 8 H 0.081 0.919 9 C -0.138 4.138 10 N -0.525 5.525 11 Si 0.714 3.286 12 H -0.197 1.197 13 H -0.210 1.210 14 H -0.210 1.210 15 S 2.791 3.209 16 O -0.989 6.989 17 O -0.963 6.963 18 N -0.885 5.885 19 C -0.017 4.017 20 C 0.016 3.984 21 H 0.101 0.899 22 C -0.191 4.191 23 C -0.193 4.193 24 C -0.027 4.027 25 O -0.295 6.295 26 H 0.051 0.949 27 H 0.054 0.946 28 H 0.101 0.899 29 H 0.067 0.933 30 H 0.069 0.931 31 H 0.109 0.891 32 H 0.095 0.905 33 H 0.074 0.926 34 H 0.066 0.934 35 H 0.072 0.928 36 H 0.242 0.758 37 H 0.108 0.892 38 H 0.106 0.894 39 H 0.106 0.894 40 H 0.103 0.897 41 H 0.094 0.906 42 H 0.100 0.900 43 H 0.099 0.901 44 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 4.972 9.780 0.694 10.993 hybrid contribution 1.108 -0.240 0.874 1.431 sum 6.079 9.540 1.568 11.420 Atomic orbital electron populations 1.22694 0.82483 1.02375 0.99061 1.88109 1.18334 1.27079 1.95144 1.23122 0.95466 0.85145 0.99871 1.21028 0.91214 0.97550 0.89109 1.57613 1.78594 1.19334 1.27037 1.19314 0.98336 0.71527 0.98762 1.21612 1.06328 0.91891 1.37532 0.91934 1.24918 0.96498 0.96948 0.95449 1.69956 1.35268 1.03119 1.44170 0.86643 0.83548 0.79136 0.79267 1.19730 1.21049 1.21006 1.01779 0.72690 0.72315 0.74108 1.93536 1.70057 1.47489 1.87775 1.93570 1.86411 1.68761 1.47548 1.55870 1.25693 1.16660 1.90254 1.21829 0.85771 0.89534 1.04611 1.23000 0.94134 0.92727 0.88538 0.89877 1.23164 0.94470 0.99668 1.01778 1.23252 0.98099 1.00490 0.97505 1.23370 0.86219 0.97744 0.95379 1.88415 1.45779 1.54725 1.40630 0.94857 0.94649 0.89901 0.93312 0.93097 0.89141 0.90524 0.92580 0.93415 0.92840 0.75845 0.89235 0.89351 0.89380 0.89705 0.90600 0.89968 0.90071 0.92003 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.45 11.01 101.05 1.11 1.56 16 2 O -0.37 -6.97 8.99 -35.23 -0.32 -7.29 16 3 C 0.04 0.72 6.28 37.15 0.23 0.95 16 4 C 0.14 2.47 5.75 -4.05 -0.02 2.44 16 5 N -0.98 -20.57 2.83 -115.66 -0.33 -20.90 16 6 C 0.24 6.09 5.32 -5.19 -0.03 6.06 16 7 C -0.53 -13.72 8.74 -34.45 -0.30 -14.02 16 8 H 0.06 1.54 6.16 -52.49 -0.32 1.21 16 9 C 0.06 1.73 5.46 -17.82 -0.10 1.63 16 10 N -0.89 -25.34 13.29 55.43 0.74 -24.61 16 11 Si 0.89 20.25 29.54 -169.99 -5.02 15.23 16 12 H -0.27 -5.97 7.11 56.52 0.40 -5.57 16 13 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 14 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 15 S 2.78 55.93 6.08 -107.50 -0.65 55.28 16 16 O -1.00 -20.62 17.17 -57.17 -0.98 -21.60 16 17 O -0.98 -23.05 15.96 -57.17 -0.91 -23.96 16 18 N -1.13 -18.95 6.03 -10.61 -0.06 -19.01 16 19 C 0.11 1.84 5.73 -4.04 -0.02 1.82 16 20 C 0.08 1.03 3.62 -26.01 -0.09 0.94 16 21 H 0.08 1.05 8.14 -51.93 -0.42 0.62 16 22 C -0.15 -1.81 6.54 -24.78 -0.16 -1.97 16 23 C -0.16 -1.56 7.16 -24.48 -0.18 -1.73 16 24 C 0.05 0.57 7.78 38.19 0.30 0.87 16 25 O -0.38 -5.35 10.88 -35.23 -0.38 -5.74 16 26 H 0.03 0.40 8.14 -51.93 -0.42 -0.02 16 27 H 0.03 0.48 8.14 -51.93 -0.42 0.06 16 28 H 0.08 1.13 8.14 -51.93 -0.42 0.71 16 29 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 30 H 0.05 0.88 7.97 -51.93 -0.41 0.47 16 31 H 0.09 1.65 8.11 -51.93 -0.42 1.23 16 32 H 0.08 1.16 7.78 -51.93 -0.40 0.76 16 33 H 0.06 1.52 6.57 -51.93 -0.34 1.18 16 34 H 0.05 1.33 6.79 -51.93 -0.35 0.98 16 35 H 0.26 7.09 8.31 -40.82 -0.34 6.75 16 36 H 0.41 6.01 8.57 -34.47 -0.30 5.72 16 37 H 0.09 1.68 5.81 -51.93 -0.30 1.37 16 38 H 0.09 1.58 7.69 -51.93 -0.40 1.18 16 39 H 0.09 1.16 7.85 -51.93 -0.41 0.75 16 40 H 0.08 0.86 8.14 -51.93 -0.42 0.44 16 41 H 0.08 0.66 8.14 -51.93 -0.42 0.24 16 42 H 0.08 0.73 8.14 -51.93 -0.42 0.31 16 43 H 0.08 0.78 8.14 -51.93 -0.42 0.36 16 44 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 LS Contribution 368.48 15.07 5.55 5.55 Total: -1.00 -32.77 368.48 -8.65 -41.42 By element: Atomic # 1 Polarization: 14.11 SS G_CDS: -7.02 Total: 7.09 kcal Atomic # 6 Polarization: -2.20 SS G_CDS: 0.74 Total: -1.46 kcal Atomic # 7 Polarization: -64.86 SS G_CDS: 0.35 Total: -64.52 kcal Atomic # 8 Polarization: -55.99 SS G_CDS: -2.59 Total: -58.58 kcal Atomic # 14 Polarization: 20.25 SS G_CDS: -5.02 Total: 15.23 kcal Atomic # 16 Polarization: 55.93 SS G_CDS: -0.65 Total: 55.28 kcal Total LS contribution 5.55 Total: 5.55 kcal Total: -32.77 -8.65 -41.42 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000336883230.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -128.541 kcal (2) G-P(sol) polarization free energy of solvation -32.765 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -161.307 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.653 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.419 kcal (6) G-S(sol) free energy of system = (1) + (5) -169.960 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds