Wall clock time and date at job start Fri Apr 10 2020 18:29:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.42902 * 114.00169 * 2 1 4 4 C 1.52993 * 109.46963 * 179.97438 * 3 2 1 5 5 N 1.46495 * 109.47470 * 65.00005 * 4 3 2 6 6 C 1.46507 * 119.99821 * 274.99657 * 5 4 3 7 7 C 1.50695 * 109.47338 * 279.39266 * 6 5 4 8 8 H 1.08000 * 119.99762 * 359.37172 * 7 6 5 9 9 C 1.37870 * 120.00078 * 179.35950 * 7 6 5 10 10 N 1.31520 * 120.00085 * 0.02562 * 9 7 6 11 11 Si 1.86798 * 119.99998 * 180.02562 * 9 7 6 12 12 H 1.48493 * 109.47282 * 0.02562 * 11 9 7 13 13 H 1.48500 * 109.46962 * 120.00570 * 11 9 7 14 14 H 1.48500 * 109.47280 * 240.00260 * 11 9 7 15 15 S 1.65603 * 120.00289 * 94.99434 * 5 4 3 16 16 O 1.42100 * 106.40193 * 330.28387 * 15 5 4 17 17 O 1.42100 * 106.40269 * 197.36310 * 15 5 4 18 18 N 1.65597 * 107.21637 * 83.82354 * 15 5 4 19 19 C 1.46510 * 120.00184 * 66.28203 * 18 15 5 20 20 C 1.52997 * 109.47141 * 163.34118 * 19 18 15 21 21 H 1.08998 * 109.82359 * 305.56923 * 20 19 18 22 22 C 1.54382 * 109.83015 * 184.58974 * 20 19 18 23 23 C 1.55311 * 102.25526 * 219.13253 * 22 20 19 24 24 C 1.54950 * 100.93889 * 34.13022 * 23 22 20 25 25 O 1.43243 * 109.83162 * 66.45738 * 20 19 18 26 26 H 1.09002 * 109.47463 * 300.00342 * 1 2 3 27 27 H 1.08995 * 109.47167 * 60.00289 * 1 2 3 28 28 H 1.09002 * 109.47477 * 180.02562 * 1 2 3 29 29 H 1.08997 * 109.47319 * 59.99558 * 3 2 1 30 30 H 1.09006 * 109.46651 * 299.99540 * 3 2 1 31 31 H 1.09000 * 109.47438 * 304.99483 * 4 3 2 32 32 H 1.09006 * 109.46965 * 184.99575 * 4 3 2 33 33 H 1.09000 * 109.46560 * 39.40033 * 6 5 4 34 34 H 1.09001 * 109.46994 * 159.39336 * 6 5 4 35 35 H 0.96996 * 120.00121 * 179.97438 * 10 9 7 36 36 H 0.96994 * 120.00423 * 246.28636 * 18 15 5 37 37 H 1.09002 * 109.46752 * 283.34232 * 19 18 15 38 38 H 1.08999 * 109.46670 * 43.34313 * 19 18 15 39 39 H 1.09001 * 110.84348 * 337.32008 * 22 20 19 40 40 H 1.08992 * 110.85040 * 100.93669 * 22 20 19 41 41 H 1.09000 * 111.11967 * 276.21643 * 23 22 20 42 42 H 1.08994 * 111.12393 * 152.04868 * 23 22 20 43 43 H 1.09005 * 110.30594 * 204.64758 * 24 23 22 44 44 H 1.08998 * 110.31131 * 82.47611 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 6 3.5354 1.1846 0.0006 5 7 3.9767 0.5639 -1.2508 6 6 4.0015 -0.8957 -1.3756 7 6 5.2506 -1.4342 -0.7271 8 1 5.9605 -0.7562 -0.2767 9 6 5.4871 -2.7923 -0.7083 10 7 4.6227 -3.6179 -1.2570 11 14 7.0351 -3.4598 0.0962 12 1 7.8376 -2.3331 0.6362 13 1 6.6617 -4.3763 1.2034 14 1 7.8363 -4.2009 -0.9108 15 16 4.4474 1.5119 -2.5244 16 8 3.7081 2.7209 -2.4194 17 8 4.4176 0.6803 -3.6762 18 7 6.0352 1.9118 -2.2772 19 6 7.0672 0.8726 -2.3175 20 6 8.4419 1.5249 -2.4773 21 1 8.4419 2.1779 -3.3501 22 6 9.5235 0.4349 -2.6363 23 6 10.7013 1.0158 -1.8072 24 6 9.9333 1.7430 -0.6749 25 8 8.7598 2.2822 -1.3038 26 1 -0.3634 0.5139 0.8899 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3634 -1.0277 0.0005 29 1 1.6886 1.8464 0.8899 30 1 1.6887 1.8463 -0.8901 31 1 3.8508 0.5685 0.8427 32 1 3.9785 2.1765 0.0901 33 1 3.1254 -1.3173 -0.8829 34 1 3.9925 -1.1703 -2.4304 35 1 4.7892 -4.5734 -1.2441 36 1 6.2821 2.8340 -2.1057 37 1 7.0423 0.2999 -1.3904 38 1 6.8803 0.2075 -3.1606 39 1 9.1841 -0.5124 -2.2171 40 1 9.8059 0.3183 -3.6825 41 1 11.2884 1.7188 -2.3981 42 1 11.3301 0.2203 -1.4074 43 1 10.5426 2.5458 -0.2595 44 1 9.6530 1.0366 0.1065 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000336883230.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:29:20 Heat of formation + Delta-G solvation = -196.047534 kcal Electronic energy + Delta-G solvation = -27484.049903 eV Core-core repulsion = 23562.357819 eV Total energy + Delta-G solvation = -3921.692085 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 322.144 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -40.44377 -39.05211 -38.28398 -36.95697 -36.85554 -35.98196 -34.49915 -33.04539 -31.01582 -30.64039 -28.45497 -26.98832 -26.08728 -24.59034 -23.28762 -22.61425 -22.14885 -20.28071 -18.79573 -18.61117 -18.34726 -17.85962 -17.41018 -17.05588 -16.97551 -16.70549 -16.42853 -15.96470 -15.78613 -15.31080 -14.96420 -14.61555 -14.43674 -13.97001 -13.86002 -13.59282 -13.49889 -13.47949 -13.34764 -13.22187 -13.13122 -12.93538 -12.67750 -12.63637 -12.52823 -12.24295 -12.08050 -11.99646 -11.95615 -11.77706 -11.68056 -11.58517 -10.57594 -10.56309 -10.45520 -10.29682 -9.69671 -8.08251 -6.20563 -0.26846 1.43437 1.45359 1.56253 2.01589 2.46684 2.61578 2.92423 2.99986 3.23822 3.44039 3.59797 3.84298 3.97719 4.00844 4.19222 4.23294 4.25924 4.40267 4.41096 4.50103 4.56050 4.59430 4.66683 4.70806 4.82604 4.85390 4.88038 4.93954 4.96350 5.06081 5.10854 5.15904 5.31673 5.51783 5.66342 5.83578 5.94892 6.08559 6.21687 6.26199 6.41026 6.91795 7.47598 9.00440 Molecular weight = 322.14amu Principal moments of inertia in cm(-1) A = 0.010608 B = 0.006085 C = 0.004449 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2638.774962 B = 4600.387124 C = 6291.673681 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.408 6.408 3 C 0.041 3.959 4 C 0.129 3.871 5 N -0.989 5.989 6 C 0.262 3.738 7 C -0.531 4.531 8 H 0.074 0.926 9 C 0.010 3.990 10 N -0.929 5.929 11 Si 0.953 3.047 12 H -0.254 1.254 13 H -0.286 1.286 14 H -0.280 1.280 15 S 2.797 3.203 16 O -1.006 7.006 17 O -1.017 7.017 18 N -1.110 6.110 19 C 0.108 3.892 20 C 0.079 3.921 21 H 0.099 0.901 22 C -0.157 4.157 23 C -0.145 4.145 24 C 0.039 3.961 25 O -0.392 6.392 26 H 0.060 0.940 27 H 0.040 0.960 28 H 0.084 0.916 29 H 0.086 0.914 30 H 0.043 0.957 31 H 0.084 0.916 32 H 0.107 0.893 33 H 0.031 0.969 34 H 0.012 0.988 35 H 0.262 0.738 36 H 0.422 0.578 37 H 0.070 0.930 38 H 0.072 0.928 39 H 0.070 0.930 40 H 0.103 0.897 41 H 0.094 0.906 42 H 0.096 0.904 43 H 0.103 0.897 44 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.642 11.483 2.545 14.026 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.327 6.327 3 C -0.037 4.037 4 C 0.003 3.997 5 N -0.830 5.830 6 C 0.139 3.861 7 C -0.570 4.570 8 H 0.092 0.908 9 C -0.189 4.189 10 N -0.569 5.569 11 Si 0.778 3.222 12 H -0.178 1.178 13 H -0.213 1.213 14 H -0.206 1.206 15 S 2.805 3.195 16 O -0.990 6.990 17 O -1.001 7.001 18 N -0.872 5.872 19 C -0.019 4.019 20 C 0.020 3.980 21 H 0.116 0.884 22 C -0.195 4.195 23 C -0.182 4.182 24 C -0.037 4.037 25 O -0.312 6.312 26 H 0.079 0.921 27 H 0.059 0.941 28 H 0.103 0.897 29 H 0.104 0.896 30 H 0.061 0.939 31 H 0.103 0.897 32 H 0.125 0.875 33 H 0.049 0.951 34 H 0.030 0.970 35 H 0.071 0.929 36 H 0.257 0.743 37 H 0.088 0.912 38 H 0.090 0.910 39 H 0.089 0.911 40 H 0.121 0.879 41 H 0.113 0.887 42 H 0.114 0.886 43 H 0.121 0.879 44 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 6.993 11.380 1.805 13.478 hybrid contribution 0.419 -0.653 0.547 0.950 sum 7.412 10.726 2.353 13.249 Atomic orbital electron populations 1.22878 0.80505 1.03117 1.00636 1.88056 1.20730 1.28457 1.95451 1.23189 0.94567 0.84755 1.01222 1.21337 0.92469 0.98577 0.87362 1.57490 1.79364 1.17621 1.28482 1.18771 0.97358 0.73916 0.96080 1.21863 1.06352 0.92158 1.36668 0.90845 1.25779 0.99653 0.97384 0.96073 1.70105 1.37516 1.03382 1.45940 0.85588 0.79806 0.78736 0.78093 1.17779 1.21263 1.20614 1.01210 0.73236 0.71708 0.73341 1.93522 1.70722 1.47110 1.87686 1.93523 1.87168 1.69867 1.49501 1.55509 1.24420 1.17478 1.89807 1.21837 0.87715 0.89513 1.02840 1.22981 0.92487 0.93483 0.89088 0.88361 1.23216 0.94679 0.98286 1.03309 1.23251 0.97393 1.00985 0.96618 1.23587 0.85863 0.98576 0.95631 1.88393 1.47090 1.54879 1.40823 0.92131 0.94104 0.89731 0.89629 0.93858 0.89740 0.87539 0.95072 0.97033 0.92897 0.74259 0.91191 0.91008 0.91080 0.87860 0.88709 0.88567 0.87861 0.93056 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.71 11.01 113.37 1.25 1.96 16 2 O -0.41 -15.52 8.99 -148.98 -1.34 -16.86 16 3 C 0.04 1.34 6.28 71.98 0.45 1.79 16 4 C 0.13 4.50 5.75 86.38 0.50 4.99 16 5 N -0.99 -41.93 2.83 -519.85 -1.47 -43.40 16 6 C 0.26 13.69 5.32 85.63 0.46 14.14 16 7 C -0.53 -27.76 8.74 25.60 0.22 -27.54 16 8 H 0.07 3.61 6.16 -2.91 -0.02 3.59 16 9 C 0.01 0.54 5.46 84.65 0.46 1.00 16 10 N -0.93 -54.72 13.29 21.45 0.28 -54.44 16 11 Si 0.95 41.66 29.54 68.60 2.03 43.69 16 12 H -0.25 -10.25 7.11 99.48 0.71 -9.54 16 13 H -0.29 -12.58 7.11 99.48 0.71 -11.87 16 14 H -0.28 -12.03 7.11 99.48 0.71 -11.33 16 15 S 2.80 113.10 6.08 -56.49 -0.34 112.76 16 16 O -1.01 -40.50 17.17 -128.00 -2.20 -42.70 16 17 O -1.02 -49.39 15.96 -128.00 -2.04 -51.43 16 18 N -1.11 -36.63 6.03 -187.47 -1.13 -37.76 16 19 C 0.11 3.60 5.73 86.38 0.49 4.10 16 20 C 0.08 2.03 3.62 31.06 0.11 2.14 16 21 H 0.10 2.25 8.14 -2.39 -0.02 2.23 16 22 C -0.16 -3.39 6.54 31.86 0.21 -3.19 16 23 C -0.15 -2.43 7.16 32.05 0.23 -2.20 16 24 C 0.04 0.81 7.78 72.65 0.56 1.37 16 25 O -0.39 -10.30 10.88 -148.98 -1.62 -11.92 16 26 H 0.06 1.37 8.14 -2.39 -0.02 1.35 16 27 H 0.04 1.09 8.14 -2.39 -0.02 1.07 16 28 H 0.08 2.31 8.14 -2.39 -0.02 2.29 16 29 H 0.09 2.15 8.14 -2.39 -0.02 2.13 16 30 H 0.04 1.47 7.97 -2.38 -0.02 1.45 16 31 H 0.08 3.05 8.11 -2.39 -0.02 3.03 16 32 H 0.11 3.03 7.78 -2.38 -0.02 3.01 16 33 H 0.03 1.78 6.57 -2.39 -0.02 1.76 16 34 H 0.01 0.69 6.79 -2.39 -0.02 0.67 16 35 H 0.26 14.59 8.31 -92.71 -0.77 13.82 16 36 H 0.42 11.74 8.57 -96.75 -0.83 10.92 16 37 H 0.07 2.62 5.81 -2.39 -0.01 2.60 16 38 H 0.07 2.64 7.69 -2.39 -0.02 2.62 16 39 H 0.07 1.78 7.85 -2.39 -0.02 1.76 16 40 H 0.10 1.84 8.14 -2.39 -0.02 1.82 16 41 H 0.09 1.27 8.14 -2.39 -0.02 1.25 16 42 H 0.10 1.37 8.14 -2.39 -0.02 1.35 16 43 H 0.10 1.64 8.14 -2.38 -0.02 1.63 16 44 H 0.05 1.15 8.14 -2.39 -0.02 1.13 16 Total: -1.00 -72.06 368.48 -2.72 -74.78 By element: Atomic # 1 Polarization: 28.56 SS G_CDS: 0.17 Total: 28.73 kcal Atomic # 6 Polarization: -6.38 SS G_CDS: 4.95 Total: -1.44 kcal Atomic # 7 Polarization: -133.28 SS G_CDS: -2.31 Total: -135.60 kcal Atomic # 8 Polarization: -115.71 SS G_CDS: -7.20 Total: -122.92 kcal Atomic # 14 Polarization: 41.66 SS G_CDS: 2.03 Total: 43.69 kcal Atomic # 16 Polarization: 113.10 SS G_CDS: -0.34 Total: 112.76 kcal Total: -72.06 -2.72 -74.78 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000336883230.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -121.269 kcal (2) G-P(sol) polarization free energy of solvation -72.063 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -193.332 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.716 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.779 kcal (6) G-S(sol) free energy of system = (1) + (5) -196.048 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds