Wall clock time and date at job start Fri Apr 10 2020 18:29:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.42898 * 114.00186 * 2 1 4 4 C 1.52997 * 109.47319 * 180.02562 * 3 2 1 5 5 N 1.46497 * 109.47195 * 64.99855 * 4 3 2 6 6 C 1.46504 * 120.00489 * 275.00228 * 5 4 3 7 7 C 1.50699 * 109.46735 * 84.99745 * 6 5 4 8 8 H 1.07993 * 120.00519 * 0.02562 * 7 6 5 9 9 C 1.37880 * 119.99503 * 180.02562 * 7 6 5 10 10 N 1.31510 * 120.00344 * 0.02562 * 9 7 6 11 11 Si 1.86802 * 119.99850 * 180.02562 * 9 7 6 12 12 H 1.48497 * 109.47392 * 59.99804 * 11 9 7 13 13 H 1.48493 * 109.47270 * 180.02562 * 11 9 7 14 14 H 1.48502 * 109.47378 * 300.00156 * 11 9 7 15 15 S 1.65606 * 119.99697 * 95.00182 * 5 4 3 16 16 O 1.42101 * 106.40064 * 203.54110 * 15 5 4 17 17 O 1.42092 * 106.40182 * 336.45974 * 15 5 4 18 18 N 1.65596 * 107.21781 * 90.00201 * 15 5 4 19 19 C 1.46500 * 120.00061 * 64.99939 * 18 15 5 20 20 C 1.53003 * 109.47209 * 164.99569 * 19 18 15 21 21 H 1.08999 * 110.43837 * 303.91416 * 20 19 18 22 22 C 1.54814 * 110.48944 * 181.21877 * 20 19 18 23 23 C 1.54993 * 102.09107 * 220.44887 * 22 20 19 24 24 O 1.44370 * 103.49544 * 37.02304 * 23 22 20 25 25 C 1.43743 * 106.97602 * 319.94370 * 24 23 22 26 26 H 1.09001 * 109.46918 * 299.99649 * 1 2 3 27 27 H 1.08999 * 109.46857 * 59.99535 * 1 2 3 28 28 H 1.08998 * 109.46946 * 179.97438 * 1 2 3 29 29 H 1.09002 * 109.47259 * 300.00293 * 3 2 1 30 30 H 1.09001 * 109.47074 * 60.00315 * 3 2 1 31 31 H 1.09001 * 109.47630 * 185.00204 * 4 3 2 32 32 H 1.09004 * 109.47346 * 305.00335 * 4 3 2 33 33 H 1.08998 * 109.46958 * 204.99692 * 6 5 4 34 34 H 1.08993 * 109.46893 * 325.00027 * 6 5 4 35 35 H 0.97002 * 120.00435 * 179.97438 * 10 9 7 36 36 H 0.97002 * 119.99903 * 244.99624 * 18 15 5 37 37 H 1.08996 * 109.47058 * 285.00075 * 19 18 15 38 38 H 1.09005 * 109.46914 * 45.00013 * 19 18 15 39 39 H 1.09002 * 110.90468 * 338.64883 * 22 20 19 40 40 H 1.09001 * 110.89998 * 102.25110 * 22 20 19 41 41 H 1.09004 * 110.61860 * 278.52110 * 23 22 20 42 42 H 1.08995 * 110.61697 * 155.53017 * 23 22 20 43 43 H 1.09007 * 109.87670 * 267.08688 * 25 24 23 44 44 H 1.09001 * 109.88330 * 145.93767 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5355 1.1846 -0.0006 5 7 3.9757 0.5644 -1.2527 6 6 4.0004 -0.8951 -1.3782 7 6 2.6348 -1.3876 -1.7827 8 1 1.8292 -0.6839 -1.9318 9 6 2.4139 -2.7366 -1.9625 10 7 3.3947 -3.5936 -1.7804 11 14 0.7214 -3.3471 -2.4645 12 1 0.3447 -2.7451 -3.7687 13 1 0.7460 -4.8265 -2.5905 14 1 -0.2724 -2.9552 -1.4330 15 16 4.4454 1.5130 -2.5263 16 8 4.2757 0.7257 -3.6970 17 8 3.8178 2.7742 -2.3401 18 7 6.0733 1.7731 -2.3695 19 6 7.0082 0.6503 -2.4770 20 6 8.4282 1.1858 -2.6713 21 1 8.4722 1.8412 -3.5411 22 6 9.4327 0.0170 -2.8184 23 6 10.6419 0.5220 -1.9908 24 8 10.0267 1.2117 -0.8818 25 6 8.9003 1.9327 -1.4087 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 0.5139 -0.8899 28 1 -0.3633 -1.0277 -0.0005 29 1 1.6886 1.8464 -0.8900 30 1 1.6887 1.8463 0.8900 31 1 3.9786 2.1764 0.0890 32 1 3.8515 0.5681 0.8409 33 1 4.7294 -1.1822 -2.1360 34 1 4.2774 -1.3374 -0.4214 35 1 3.2392 -4.5427 -1.9065 36 1 6.4079 2.6689 -2.2066 37 1 6.9662 0.0540 -1.5656 38 1 6.7341 0.0297 -3.3302 39 1 9.0264 -0.9009 -2.3934 40 1 9.7096 -0.1287 -3.8626 41 1 11.2504 1.2083 -2.5797 42 1 11.2415 -0.3165 -1.6364 43 1 9.1990 2.9482 -1.6689 44 1 8.0981 1.9576 -0.6711 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000336909769.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:29:28 Heat of formation + Delta-G solvation = -160.026851 kcal Electronic energy + Delta-G solvation = -27332.165996 eV Core-core repulsion = 23412.035885 eV Total energy + Delta-G solvation = -3920.130111 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 322.144 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -39.63437 -37.48071 -36.63969 -35.51786 -35.17113 -35.10124 -32.37683 -31.89124 -29.33286 -29.24333 -26.57736 -25.37909 -25.36475 -22.66469 -22.55864 -21.74813 -20.70722 -18.92634 -17.35117 -16.93463 -16.84013 -16.44081 -16.03204 -15.76795 -15.45409 -15.11868 -14.97290 -14.72403 -14.27662 -14.16073 -13.86336 -13.38509 -12.96493 -12.74849 -12.53684 -12.40924 -12.19129 -12.03786 -11.68075 -11.60256 -11.45181 -11.42943 -11.23184 -11.09235 -11.03028 -10.84626 -10.81665 -10.74947 -10.53889 -10.22898 -9.89813 -9.80353 -9.54932 -9.30948 -8.68833 -8.23213 -8.02682 -5.86158 -3.80570 1.20364 3.41287 3.45980 3.48064 3.51346 3.79593 4.09446 4.40017 4.50743 4.52937 4.60884 4.72621 5.00490 5.01404 5.12880 5.22545 5.36606 5.50590 5.52485 5.54155 5.55933 5.65029 5.68646 5.70673 5.77382 5.87049 5.89038 5.92530 6.00808 6.01413 6.11627 6.32376 6.38691 6.52683 6.71422 7.10058 7.33418 7.51023 7.69748 7.97499 8.14828 8.42715 9.19053 9.78275 11.24407 Molecular weight = 322.14amu Principal moments of inertia in cm(-1) A = 0.014917 B = 0.004489 C = 0.003937 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1876.567619 B = 6235.872524 C = 7111.202128 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.333 6.333 3 C 0.041 3.959 4 C 0.140 3.860 5 N -0.988 5.988 6 C 0.260 3.740 7 C -0.483 4.483 8 H 0.070 0.930 9 C 0.055 3.945 10 N -0.908 5.908 11 Si 0.890 3.110 12 H -0.279 1.279 13 H -0.291 1.291 14 H -0.278 1.278 15 S 2.779 3.221 16 O -0.962 6.962 17 O -1.000 7.000 18 N -1.138 6.138 19 C 0.129 3.871 20 C -0.129 4.129 21 H 0.090 0.910 22 C -0.151 4.151 23 C 0.046 3.954 24 O -0.378 6.378 25 C 0.048 3.952 26 H 0.025 0.975 27 H 0.031 0.969 28 H 0.080 0.920 29 H 0.046 0.954 30 H 0.042 0.958 31 H 0.076 0.924 32 H 0.081 0.919 33 H 0.033 0.967 34 H 0.034 0.966 35 H 0.258 0.742 36 H 0.407 0.593 37 H 0.073 0.927 38 H 0.085 0.915 39 H 0.087 0.913 40 H 0.084 0.916 41 H 0.058 0.942 42 H 0.093 0.907 43 H 0.057 0.943 44 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.714 10.525 2.093 14.475 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.250 6.250 3 C -0.039 4.039 4 C 0.013 3.987 5 N -0.830 5.830 6 C 0.139 3.861 7 C -0.522 4.522 8 H 0.088 0.912 9 C -0.144 4.144 10 N -0.550 5.550 11 Si 0.719 3.281 12 H -0.205 1.205 13 H -0.217 1.217 14 H -0.204 1.204 15 S 2.787 3.213 16 O -0.945 6.945 17 O -0.984 6.984 18 N -0.896 5.896 19 C 0.002 3.998 20 C -0.149 4.149 21 H 0.108 0.892 22 C -0.189 4.189 23 C -0.030 4.030 24 O -0.297 6.297 25 C -0.029 4.029 26 H 0.044 0.956 27 H 0.049 0.951 28 H 0.099 0.901 29 H 0.064 0.936 30 H 0.060 0.940 31 H 0.095 0.905 32 H 0.100 0.900 33 H 0.051 0.949 34 H 0.052 0.948 35 H 0.068 0.932 36 H 0.239 0.761 37 H 0.091 0.909 38 H 0.103 0.897 39 H 0.106 0.894 40 H 0.102 0.898 41 H 0.076 0.924 42 H 0.111 0.889 43 H 0.076 0.924 44 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges 9.309 10.274 1.562 13.952 hybrid contribution -0.941 0.044 -0.132 0.952 sum 8.367 10.318 1.430 13.361 Atomic orbital electron populations 1.22647 0.83689 1.02187 0.98237 1.88544 1.17156 1.24647 1.94647 1.22918 0.95073 0.86636 0.99225 1.21035 0.92596 0.97104 0.87974 1.57714 1.78333 1.19417 1.27510 1.19075 0.98068 0.71342 0.97657 1.21464 0.95887 0.91929 1.42947 0.91187 1.24826 0.96530 0.96797 0.96249 1.69902 1.31394 1.02201 1.51463 0.86717 0.85228 0.77228 0.78967 1.20533 1.21721 1.20383 1.02045 0.72529 0.72552 0.74216 1.93628 1.84525 1.70462 1.45886 1.93539 1.74101 1.43631 1.87126 1.56292 1.26756 1.15767 1.90825 1.21301 0.87392 0.88114 1.02952 1.22783 0.95184 0.97889 0.99068 0.89175 1.23195 0.95168 0.98919 1.01634 1.23553 0.95310 0.96131 0.88018 1.88880 1.43482 1.65828 1.31530 1.23306 0.89210 0.94855 0.95535 0.95626 0.95082 0.90112 0.93617 0.94045 0.90545 0.90025 0.94915 0.94810 0.93197 0.76122 0.90921 0.89687 0.89413 0.89753 0.92353 0.88872 0.92427 0.89202 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.52 10.90 101.05 1.10 1.62 16 2 O -0.33 -6.92 6.62 -35.23 -0.23 -7.15 16 3 C 0.04 0.72 6.22 37.16 0.23 0.95 16 4 C 0.14 2.36 5.81 -4.04 -0.02 2.34 16 5 N -0.99 -19.61 2.86 -115.67 -0.33 -19.94 16 6 C 0.26 6.31 5.04 -5.19 -0.03 6.28 16 7 C -0.48 -13.20 7.22 -34.44 -0.25 -13.44 16 8 H 0.07 1.93 6.09 -52.49 -0.32 1.61 16 9 C 0.06 1.57 5.46 -17.82 -0.10 1.47 16 10 N -0.91 -26.57 13.29 55.43 0.74 -25.83 16 11 Si 0.89 22.11 29.54 -169.99 -5.02 17.09 16 12 H -0.28 -7.00 7.11 56.52 0.40 -6.60 16 13 H -0.29 -7.19 7.11 56.52 0.40 -6.79 16 14 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 15 S 2.78 52.57 6.05 -107.50 -0.65 51.92 16 16 O -0.96 -22.39 16.58 -57.17 -0.95 -23.34 16 17 O -1.00 -19.72 17.11 -57.17 -0.98 -20.70 16 18 N -1.14 -15.65 5.85 -10.61 -0.06 -15.71 16 19 C 0.13 1.70 5.36 -4.04 -0.02 1.68 16 20 C -0.13 -1.33 3.19 -89.09 -0.28 -1.61 16 21 H 0.09 0.83 8.14 -51.93 -0.42 0.40 16 22 C -0.15 -1.42 6.71 -24.72 -0.17 -1.58 16 23 C 0.05 0.42 7.72 38.21 0.29 0.72 16 24 O -0.38 -4.52 11.52 -35.23 -0.41 -4.93 16 25 C 0.05 0.49 6.88 37.73 0.26 0.75 16 26 H 0.03 0.37 8.14 -51.93 -0.42 -0.05 16 27 H 0.03 0.53 8.14 -51.93 -0.42 0.10 16 28 H 0.08 1.48 8.14 -51.93 -0.42 1.05 16 29 H 0.05 0.85 8.14 -51.93 -0.42 0.43 16 30 H 0.04 0.60 8.14 -51.93 -0.42 0.18 16 31 H 0.08 1.05 7.61 -51.93 -0.40 0.66 16 32 H 0.08 1.32 8.00 -51.93 -0.42 0.90 16 33 H 0.03 0.84 7.61 -51.93 -0.40 0.44 16 34 H 0.03 0.85 8.00 -51.93 -0.42 0.44 16 35 H 0.26 7.28 8.31 -40.82 -0.34 6.94 16 36 H 0.41 4.45 8.26 -34.47 -0.28 4.16 16 37 H 0.07 0.99 8.14 -51.93 -0.42 0.57 16 38 H 0.08 1.26 7.75 -51.93 -0.40 0.86 16 39 H 0.09 0.89 7.87 -51.93 -0.41 0.49 16 40 H 0.08 0.67 8.14 -51.93 -0.42 0.24 16 41 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 42 H 0.09 0.74 8.14 -51.93 -0.42 0.31 16 43 H 0.06 0.50 8.14 -51.92 -0.42 0.08 16 44 H 0.09 0.93 7.56 -51.93 -0.39 0.54 16 LS Contribution 367.84 15.07 5.54 5.54 Total: -1.00 -34.54 367.84 -8.54 -43.08 By element: Atomic # 1 Polarization: 8.01 SS G_CDS: -7.21 Total: 0.80 kcal Atomic # 6 Polarization: -1.84 SS G_CDS: 1.02 Total: -0.82 kcal Atomic # 7 Polarization: -61.83 SS G_CDS: 0.34 Total: -61.49 kcal Atomic # 8 Polarization: -53.55 SS G_CDS: -2.57 Total: -56.12 kcal Atomic # 14 Polarization: 22.11 SS G_CDS: -5.02 Total: 17.09 kcal Atomic # 16 Polarization: 52.57 SS G_CDS: -0.65 Total: 51.92 kcal Total LS contribution 5.54 Total: 5.54 kcal Total: -34.54 -8.54 -43.08 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000336909769.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -116.948 kcal (2) G-P(sol) polarization free energy of solvation -34.535 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -151.483 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.544 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.079 kcal (6) G-S(sol) free energy of system = (1) + (5) -160.027 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds