Wall clock time and date at job start Fri Apr 10 2020 18:29:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.42898 * 114.00186 * 2 1 4 4 C 1.52997 * 109.47319 * 180.02562 * 3 2 1 5 5 N 1.46497 * 109.47195 * 64.99855 * 4 3 2 6 6 C 1.46504 * 120.00489 * 275.00228 * 5 4 3 7 7 C 1.50699 * 109.46735 * 84.99745 * 6 5 4 8 8 H 1.07993 * 120.00519 * 0.02562 * 7 6 5 9 9 C 1.37880 * 119.99503 * 180.02562 * 7 6 5 10 10 N 1.31510 * 120.00344 * 0.02562 * 9 7 6 11 11 Si 1.86802 * 119.99850 * 180.02562 * 9 7 6 12 12 H 1.48497 * 109.47392 * 59.99804 * 11 9 7 13 13 H 1.48493 * 109.47270 * 180.02562 * 11 9 7 14 14 H 1.48502 * 109.47378 * 300.00156 * 11 9 7 15 15 S 1.65606 * 119.99697 * 95.00182 * 5 4 3 16 16 O 1.42101 * 106.40064 * 203.54110 * 15 5 4 17 17 O 1.42092 * 106.40182 * 336.45974 * 15 5 4 18 18 N 1.65596 * 107.21781 * 90.00201 * 15 5 4 19 19 C 1.46500 * 120.00061 * 64.99939 * 18 15 5 20 20 C 1.53003 * 109.47209 * 164.99569 * 19 18 15 21 21 H 1.08999 * 110.43837 * 303.91416 * 20 19 18 22 22 C 1.54814 * 110.48944 * 181.21877 * 20 19 18 23 23 C 1.54993 * 102.09107 * 220.44887 * 22 20 19 24 24 O 1.44370 * 103.49544 * 37.02304 * 23 22 20 25 25 C 1.43743 * 106.97602 * 319.94370 * 24 23 22 26 26 H 1.09001 * 109.46918 * 299.99649 * 1 2 3 27 27 H 1.08999 * 109.46857 * 59.99535 * 1 2 3 28 28 H 1.08998 * 109.46946 * 179.97438 * 1 2 3 29 29 H 1.09002 * 109.47259 * 300.00293 * 3 2 1 30 30 H 1.09001 * 109.47074 * 60.00315 * 3 2 1 31 31 H 1.09001 * 109.47630 * 185.00204 * 4 3 2 32 32 H 1.09004 * 109.47346 * 305.00335 * 4 3 2 33 33 H 1.08998 * 109.46958 * 204.99692 * 6 5 4 34 34 H 1.08993 * 109.46893 * 325.00027 * 6 5 4 35 35 H 0.97002 * 120.00435 * 179.97438 * 10 9 7 36 36 H 0.97002 * 119.99903 * 244.99624 * 18 15 5 37 37 H 1.08996 * 109.47058 * 285.00075 * 19 18 15 38 38 H 1.09005 * 109.46914 * 45.00013 * 19 18 15 39 39 H 1.09002 * 110.90468 * 338.64883 * 22 20 19 40 40 H 1.09001 * 110.89998 * 102.25110 * 22 20 19 41 41 H 1.09004 * 110.61860 * 278.52110 * 23 22 20 42 42 H 1.08995 * 110.61697 * 155.53017 * 23 22 20 43 43 H 1.09007 * 109.87670 * 267.08688 * 25 24 23 44 44 H 1.09001 * 109.88330 * 145.93767 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5355 1.1846 -0.0006 5 7 3.9757 0.5644 -1.2527 6 6 4.0004 -0.8951 -1.3782 7 6 2.6348 -1.3876 -1.7827 8 1 1.8292 -0.6839 -1.9318 9 6 2.4139 -2.7366 -1.9625 10 7 3.3947 -3.5936 -1.7804 11 14 0.7214 -3.3471 -2.4645 12 1 0.3447 -2.7451 -3.7687 13 1 0.7460 -4.8265 -2.5905 14 1 -0.2724 -2.9552 -1.4330 15 16 4.4454 1.5130 -2.5263 16 8 4.2757 0.7257 -3.6970 17 8 3.8178 2.7742 -2.3401 18 7 6.0733 1.7731 -2.3695 19 6 7.0082 0.6503 -2.4770 20 6 8.4282 1.1858 -2.6713 21 1 8.4722 1.8412 -3.5411 22 6 9.4327 0.0170 -2.8184 23 6 10.6419 0.5220 -1.9908 24 8 10.0267 1.2117 -0.8818 25 6 8.9003 1.9327 -1.4087 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 0.5139 -0.8899 28 1 -0.3633 -1.0277 -0.0005 29 1 1.6886 1.8464 -0.8900 30 1 1.6887 1.8463 0.8900 31 1 3.9786 2.1764 0.0890 32 1 3.8515 0.5681 0.8409 33 1 4.7294 -1.1822 -2.1360 34 1 4.2774 -1.3374 -0.4214 35 1 3.2392 -4.5427 -1.9065 36 1 6.4079 2.6689 -2.2066 37 1 6.9662 0.0540 -1.5656 38 1 6.7341 0.0297 -3.3302 39 1 9.0264 -0.9009 -2.3934 40 1 9.7096 -0.1287 -3.8626 41 1 11.2504 1.2083 -2.5797 42 1 11.2415 -0.3165 -1.6364 43 1 9.1990 2.9482 -1.6689 44 1 8.0981 1.9576 -0.6711 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000336909769.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:29:27 Heat of formation + Delta-G solvation = -187.573517 kcal Electronic energy + Delta-G solvation = -27333.360509 eV Core-core repulsion = 23412.035885 eV Total energy + Delta-G solvation = -3921.324624 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 322.144 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -40.45264 -38.96380 -38.25541 -36.86338 -36.75431 -36.55901 -34.41943 -32.82333 -30.94043 -30.05234 -28.37568 -26.87786 -26.40879 -24.48072 -23.36920 -23.26425 -21.59597 -20.35045 -18.91813 -18.49953 -18.23816 -17.74481 -17.26389 -16.93349 -16.87711 -16.53084 -16.33108 -15.91131 -15.79162 -15.65713 -15.08624 -14.86483 -14.35208 -13.95976 -13.87183 -13.74904 -13.61155 -13.46009 -13.28944 -13.08722 -12.94865 -12.89782 -12.64402 -12.53678 -12.42840 -12.26422 -12.12066 -11.96527 -11.89548 -11.76588 -11.65811 -11.37956 -10.59515 -10.52853 -10.38510 -10.18097 -9.74553 -8.00443 -5.99641 -0.31360 1.41731 1.45138 1.50508 2.05889 2.52298 2.65978 3.05229 3.11149 3.38797 3.44257 3.54082 3.75385 3.94169 3.98309 4.21354 4.29659 4.34943 4.37331 4.43741 4.50952 4.56801 4.60395 4.65136 4.69656 4.77866 4.84753 4.90111 4.91943 4.95076 5.00908 5.08024 5.11775 5.23233 5.33557 5.60215 5.86171 5.96063 6.00747 6.19529 6.35144 6.59600 7.04277 7.61644 9.08954 Molecular weight = 322.14amu Principal moments of inertia in cm(-1) A = 0.014917 B = 0.004489 C = 0.003937 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1876.567619 B = 6235.872524 C = 7111.202128 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.370 6.370 3 C 0.035 3.965 4 C 0.130 3.870 5 N -0.992 5.992 6 C 0.277 3.723 7 C -0.484 4.484 8 H 0.064 0.936 9 C 0.004 3.996 10 N -0.939 5.939 11 Si 0.937 3.063 12 H -0.283 1.283 13 H -0.289 1.289 14 H -0.261 1.261 15 S 2.795 3.205 16 O -1.010 7.010 17 O -1.006 7.006 18 N -1.115 6.115 19 C 0.127 3.873 20 C -0.123 4.123 21 H 0.108 0.892 22 C -0.152 4.152 23 C 0.045 3.955 24 O -0.404 6.404 25 C 0.046 3.954 26 H 0.059 0.941 27 H 0.031 0.969 28 H 0.068 0.932 29 H 0.031 0.969 30 H 0.079 0.921 31 H 0.113 0.887 32 H 0.088 0.912 33 H 0.015 0.985 34 H 0.021 0.979 35 H 0.257 0.743 36 H 0.424 0.576 37 H 0.065 0.935 38 H 0.065 0.935 39 H 0.073 0.927 40 H 0.101 0.899 41 H 0.078 0.922 42 H 0.102 0.898 43 H 0.079 0.921 44 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.203 12.238 2.641 16.151 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.289 6.289 3 C -0.044 4.044 4 C 0.004 3.996 5 N -0.833 5.833 6 C 0.154 3.846 7 C -0.523 4.523 8 H 0.082 0.918 9 C -0.192 4.192 10 N -0.582 5.582 11 Si 0.764 3.236 12 H -0.209 1.209 13 H -0.215 1.215 14 H -0.186 1.186 15 S 2.803 3.197 16 O -0.993 6.993 17 O -0.990 6.990 18 N -0.879 5.879 19 C 0.000 4.000 20 C -0.143 4.143 21 H 0.126 0.874 22 C -0.191 4.191 23 C -0.031 4.031 24 O -0.324 6.324 25 C -0.031 4.031 26 H 0.077 0.923 27 H 0.050 0.950 28 H 0.086 0.914 29 H 0.050 0.950 30 H 0.097 0.903 31 H 0.131 0.869 32 H 0.107 0.893 33 H 0.033 0.967 34 H 0.039 0.961 35 H 0.066 0.934 36 H 0.260 0.740 37 H 0.083 0.917 38 H 0.083 0.917 39 H 0.091 0.909 40 H 0.120 0.880 41 H 0.096 0.904 42 H 0.120 0.880 43 H 0.097 0.903 44 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges 9.778 12.030 2.131 15.648 hybrid contribution -1.045 -0.401 -0.276 1.153 sum 8.732 11.629 1.854 14.661 Atomic orbital electron populations 1.22728 0.82460 1.01946 0.99900 1.88449 1.18781 1.26682 1.94946 1.23095 0.95289 0.85682 1.00302 1.21394 0.92622 0.98833 0.86746 1.57565 1.79226 1.17595 1.28887 1.18583 0.96100 0.73845 0.96071 1.21762 0.96948 0.91888 1.41742 0.91759 1.25516 0.99563 0.97297 0.96827 1.70006 1.32950 1.02248 1.52987 0.85950 0.82190 0.76738 0.78743 1.20946 1.21460 1.18579 1.01334 0.73365 0.71750 0.73264 1.93571 1.85744 1.71693 1.48278 1.93520 1.75072 1.43384 1.87033 1.55734 1.24880 1.17007 1.90275 1.21360 0.89066 0.87740 1.01806 1.22765 0.92940 0.98529 1.00033 0.87413 1.23226 0.95115 0.97961 1.02762 1.23714 0.95148 0.96732 0.87484 1.88851 1.44055 1.66365 1.33083 1.23385 0.88930 0.95655 0.95099 0.92260 0.95045 0.91353 0.95037 0.90266 0.86939 0.89332 0.96727 0.96118 0.93377 0.73976 0.91665 0.91655 0.90850 0.88025 0.90425 0.88021 0.90327 0.89655 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.90 10.90 113.37 1.24 2.13 16 2 O -0.37 -15.08 6.62 -148.98 -0.99 -16.07 16 3 C 0.03 1.17 6.22 71.98 0.45 1.62 16 4 C 0.13 4.16 5.81 86.38 0.50 4.67 16 5 N -0.99 -39.14 2.86 -519.86 -1.48 -40.63 16 6 C 0.28 13.74 5.04 85.63 0.43 14.17 16 7 C -0.48 -26.85 7.22 25.60 0.18 -26.66 16 8 H 0.06 3.60 6.09 -2.91 -0.02 3.58 16 9 C 0.00 0.24 5.46 84.66 0.46 0.70 16 10 N -0.94 -56.08 13.29 21.45 0.28 -55.80 16 11 Si 0.94 45.66 29.54 68.60 2.03 47.68 16 12 H -0.28 -13.88 7.11 99.48 0.71 -13.18 16 13 H -0.29 -13.85 7.11 99.48 0.71 -13.14 16 14 H -0.26 -11.88 7.11 99.48 0.71 -11.17 16 15 S 2.79 104.52 6.05 -56.49 -0.34 104.18 16 16 O -1.01 -47.81 16.58 -128.00 -2.12 -49.93 16 17 O -1.01 -38.24 17.11 -128.00 -2.19 -40.43 16 18 N -1.12 -29.37 5.85 -187.48 -1.10 -30.47 16 19 C 0.13 3.30 5.36 86.38 0.46 3.77 16 20 C -0.12 -2.31 3.19 -9.80 -0.03 -2.34 16 21 H 0.11 1.68 8.14 -2.39 -0.02 1.66 16 22 C -0.15 -2.65 6.71 31.90 0.21 -2.44 16 23 C 0.05 0.73 7.72 72.66 0.56 1.29 16 24 O -0.40 -8.98 11.52 -148.98 -1.72 -10.69 16 25 C 0.05 0.84 6.88 72.35 0.50 1.34 16 26 H 0.06 1.58 8.14 -2.39 -0.02 1.56 16 27 H 0.03 1.03 8.14 -2.39 -0.02 1.01 16 28 H 0.07 2.44 8.14 -2.39 -0.02 2.42 16 29 H 0.03 1.14 8.14 -2.39 -0.02 1.12 16 30 H 0.08 2.04 8.14 -2.39 -0.02 2.03 16 31 H 0.11 2.76 7.61 -2.39 -0.02 2.75 16 32 H 0.09 2.72 8.00 -2.39 -0.02 2.70 16 33 H 0.01 0.78 7.61 -2.39 -0.02 0.77 16 34 H 0.02 1.08 8.00 -2.39 -0.02 1.06 16 35 H 0.26 14.78 8.31 -92.71 -0.77 14.00 16 36 H 0.42 8.29 8.26 -96.75 -0.80 7.49 16 37 H 0.07 1.81 8.14 -2.39 -0.02 1.79 16 38 H 0.07 1.99 7.75 -2.38 -0.02 1.97 16 39 H 0.07 1.49 7.87 -2.39 -0.02 1.47 16 40 H 0.10 1.41 8.14 -2.39 -0.02 1.39 16 41 H 0.08 0.97 8.14 -2.38 -0.02 0.95 16 42 H 0.10 1.44 8.14 -2.39 -0.02 1.42 16 43 H 0.08 1.12 8.14 -2.38 -0.02 1.10 16 44 H 0.09 1.61 7.56 -2.39 -0.02 1.60 16 Total: -1.00 -75.10 367.84 -2.47 -77.56 By element: Atomic # 1 Polarization: 16.15 SS G_CDS: 0.19 Total: 16.34 kcal Atomic # 6 Polarization: -6.72 SS G_CDS: 4.97 Total: -1.75 kcal Atomic # 7 Polarization: -124.60 SS G_CDS: -2.30 Total: -126.89 kcal Atomic # 8 Polarization: -110.11 SS G_CDS: -7.01 Total: -117.12 kcal Atomic # 14 Polarization: 45.66 SS G_CDS: 2.03 Total: 47.68 kcal Atomic # 16 Polarization: 104.52 SS G_CDS: -0.34 Total: 104.18 kcal Total: -75.10 -2.47 -77.56 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000336909769.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -110.009 kcal (2) G-P(sol) polarization free energy of solvation -75.096 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -185.105 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.468 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.564 kcal (6) G-S(sol) free energy of system = (1) + (5) -187.574 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds